Experiment set3IT026 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -7.3 -5.0 5,10-methylenetetrahydrofolate reductase compare
RR42_RS05860 -7.0 -4.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16265 -6.6 -5.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS14390 -6.1 -4.2 3-isopropylmalate dehydratase compare
RR42_RS06485 -5.9 -5.7 chorismate synthase compare
RR42_RS16255 -5.7 -7.8 sulfate adenylyltransferase compare
RR42_RS14400 -5.6 -3.9 isopropylmalate isomerase compare
RR42_RS30655 -5.6 -6.6 LysR family transcriptional regulator compare
RR42_RS16250 -5.6 -6.6 sulfate adenylyltransferase compare
RR42_RS16275 -5.1 -3.5 membrane protein compare
RR42_RS14365 -5.0 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18305 -5.0 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS18300 -4.9 -6.4 anthranilate synthase subunit II compare
RR42_RS18295 -4.8 -14.1 anthranilate synthase component I compare
RR42_RS15890 -4.8 -9.1 heme biosynthesis protein HemY compare
RR42_RS12040 -4.6 -12.3 MFS transporter compare
RR42_RS19005 -4.6 -8.3 3-dehydroquinate synthase compare
RR42_RS33250 -4.6 -8.3 tyrosine protein kinase compare
RR42_RS11885 -4.5 -12.0 (protein-PII) uridylyltransferase compare
RR42_RS15905 -4.5 -13.0 phosphoenolpyruvate carboxylase compare
RR42_RS12985 -4.4 -9.4 histidine kinase compare
RR42_RS33255 -4.4 -5.2 protein-tyrosine phosphatase compare
RR42_RS04475 -4.4 -8.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS33260 -4.4 -9.3 multidrug MFS transporter compare
RR42_RS15415 -4.4 -2.9 membrane protein compare
RR42_RS15410 -4.3 -5.7 membrane protein compare
RR42_RS33240 -4.3 -16.3 GDP-L-fucose synthase compare
RR42_RS14320 -4.2 -6.4 O-succinylhomoserine sulfhydrylase compare
RR42_RS30660 -4.1 -9.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS14385 -4.0 -6.0 3-isopropylmalate dehydrogenase compare
RR42_RS12980 -3.9 -4.5 chemotaxis protein CheY compare
RR42_RS14170 -3.9 -10.3 molybdopterin-guanine dinucleotide biosynthesis protein A conserved
RR42_RS01160 -3.9 -7.4 homoserine O-acetyltransferase compare
RR42_RS17105 -3.8 -11.8 Clp protease ClpX compare
RR42_RS01845 -3.8 -2.2 glycerol-3-phosphate dehydrogenase compare
RR42_RS01290 -3.8 -7.7 thiamine biosynthesis protein ThiC compare
RR42_RS18990 -3.7 -16.2 glutamate synthase compare
RR42_RS12520 -3.7 -6.6 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS04535 -3.7 -7.1 cysteine synthase compare
RR42_RS16270 -3.7 -8.4 sulfite reductase compare
RR42_RS02085 -3.7 -7.6 RNA polymerase subunit sigma-54 compare
RR42_RS16245 -3.6 -6.8 uroporphyrin-III methyltransferase compare
RR42_RS19010 -3.6 -7.7 shikimate kinase compare
RR42_RS07605 -3.6 -7.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS12530 -3.6 -10.3 molybdenum cofactor biosynthesis protein MoaA conserved
RR42_RS31785 -3.5 -12.1 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
RR42_RS33210 -3.5 -6.4 teichoic acid biosynthesis protein compare
RR42_RS33245 -3.5 -8.5 mannose-1-phosphate guanyltransferase compare
RR42_RS11795 -3.5 -4.6 PEP synthetase regulatory protein compare
RR42_RS11790 -3.4 -7.4 phosphoenolpyruvate synthase compare
RR42_RS31800 -3.4 -12.5 Nitrate reductase (EC 1.7.99.4) (from data) conserved
RR42_RS33235 -3.4 -7.4 GDP-mannose 4,6-dehydratase compare
RR42_RS07365 -3.3 -3.1 pyruvate dehydrogenase compare
RR42_RS01775 -3.3 -5.9 glutamate--cysteine ligase compare
RR42_RS17645 -3.3 -4.5 shikimate dehydrogenase compare
RR42_RS01960 -3.2 -8.7 transcriptional regulator conserved
RR42_RS16280 -3.2 -5.8 transcriptional regulator compare
RR42_RS14360 -3.2 -1.6 tryptophan synthase subunit alpha compare
RR42_RS03140 -3.2 -7.9 molybdenum cofactor biosynthesis protein MoaC compare
RR42_RS14790 -3.2 -9.1 cobalamin biosynthesis protein CobD compare
RR42_RS18985 -3.1 -6.3 glutamate synthase compare
RR42_RS14175 -3.1 -8.7 molybdenum cofactor biosynthesis protein MoaA conserved
RR42_RS14760 -3.1 -4.2 molybdenum cofactor biosynthesis protein MogA compare
RR42_RS04460 -3.0 -5.3 chorismate mutase compare
RR42_RS05990 -3.0 -7.8 aromatic amino acid aminotransferase compare
RR42_RS21220 -2.9 -3.5 iron transporter FeoB compare
RR42_RS04895 -2.8 -10.9 serine/threonine protein phosphatase compare
RR42_RS34520 -2.8 -1.6 transposase compare
RR42_RS15895 -2.8 -6.6 uroporphyrinogen III methyltransferase compare
RR42_RS31780 -2.7 -14.0 MFS transporter conserved
RR42_RS18855 -2.6 -4.9 preprotein translocase compare
RR42_RS02705 -2.6 -3.1 Holliday junction DNA helicase RuvA compare
RR42_RS35875 -2.5 -11.1 UDP-galactose-4-epimerase compare
RR42_RS17060 -2.5 -15.0 histidine kinase compare
RR42_RS01380 -2.5 -2.8 membrane protein compare
RR42_RS01795 -2.5 -13.0 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS09015 -2.5 -3.9 trigger factor compare
RR42_RS01780 -2.4 -7.5 glutathione synthetase compare
RR42_RS16240 -2.4 -1.3 cobalamin biosynthesis protein CbiX compare
RR42_RS17055 -2.4 -9.8 LuxR family transcriptional regulator compare
RR42_RS06020 -2.4 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS31790 -2.3 -1.9 nitrite reductase compare
RR42_RS24605 -2.3 -7.6 TetR family transcriptional regulator compare
RR42_RS14080 -2.3 -9.1 RNA polymerase sigma factor RpoE compare
RR42_RS21300 -2.3 -8.2 GntR family transcriptional regulator compare
RR42_RS33215 -2.2 -11.0 transferase compare
RR42_RS33355 -2.2 -4.5 membrane protein compare
RR42_RS17565 -2.2 -11.9 LysR family transcriptional regulator compare
RR42_RS02045 -2.1 -11.2 GTPase compare
RR42_RS02810 -2.1 -3.1 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS13800 -2.0 -8.5 formyltetrahydrofolate deformylase compare
RR42_RS24510 -2.0 -1.8 hypothetical protein compare
RR42_RS06095 -1.9 -5.1 hypothetical protein compare
RR42_RS17690 -1.9 -6.4 3-dehydroquinate dehydratase compare
RR42_RS12925 -1.8 -3.5 ATPase compare
RR42_RS21280 -1.8 -6.2 L-lactate permease compare
RR42_RS21295 -1.8 -3.7 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS33195 -1.8 -8.1 UDP-sugar lipid carrier transferase compare
RR42_RS20195 -1.8 -1.4 ATPase F0F1 compare
RR42_RS03080 -1.8 -3.3 recombinase RecA compare
RR42_RS16945 -1.8 -5.2 NAD-dependent dehydratase compare
RR42_RS15015 -1.7 -1.5 exodeoxyribonuclease VII small subunit compare
RR42_RS22230 -1.7 -1.8 hypothetical protein compare
RR42_RS20205 -1.7 -3.3 chromosome partitioning protein compare
RR42_RS14055 -1.7 -3.2 elongation factor 4 compare
RR42_RS03095 -1.6 -1.7 succinyl-CoA synthetase subunit beta compare
RR42_RS26935 -1.6 -4.2 farnesyl-diphosphate farnesyltransferase compare
RR42_RS16260 -1.6 -0.9 phosphoadenosine phosphosulfate reductase compare
RR42_RS04470 -1.6 -3.3 prephenate dehydrogenase compare
RR42_RS18995 -1.6 -6.1 transposase compare
RR42_RS13910 -1.6 -5.2 glutamate racemase compare
RR42_RS18310 -1.5 -1.3 indole-3-glycerol-phosphate synthase compare
RR42_RS02500 -1.5 -2.7 TetR family transcriptional regulator compare
RR42_RS17720 -1.5 -1.9 sugar kinase compare
RR42_RS24490 -1.4 -2.7 hypothetical protein compare
RR42_RS21285 -1.4 -7.0 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS06880 -1.4 -2.5 hypothetical protein compare
RR42_RS16460 -1.4 -2.2 cupin compare
RR42_RS04770 -1.4 -1.5 methylglyoxal synthase compare
RR42_RS25785 -1.4 -2.7 TetR family transcriptional regulator compare
RR42_RS07140 -1.4 -1.5 hypothetical protein compare
RR42_RS18485 -1.4 -1.1 glutaredoxin compare
RR42_RS08365 -1.4 -8.0 hypothetical protein compare
RR42_RS07555 -1.4 -2.5 potassium transporter Kup compare
RR42_RS04280 -1.4 -3.6 aldehyde dehydrogenase compare
RR42_RS34215 -1.3 -1.1 ferredoxin compare
RR42_RS30640 -1.3 -4.4 DNA mismatch repair protein MutT compare
RR42_RS18670 -1.3 -4.8 metal-dependent hydrolase compare
RR42_RS05945 -1.3 -2.6 thioredoxin compare
RR42_RS19695 -1.3 -2.7 cytochrome C protein compare
RR42_RS34535 -1.3 -1.9 membrane protein compare
RR42_RS00115 -1.3 -1.8 hypothetical protein compare
RR42_RS05420 -1.3 -4.2 membrane protein compare
RR42_RS21290 -1.3 -3.5 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS15640 -1.3 -1.4 hypothetical protein compare
RR42_RS18840 -1.3 -3.4 2-alkenal reductase compare
RR42_RS01260 -1.3 -4.9 lauroyl acyltransferase compare
RR42_RS15465 -1.2 -2.6 TonB-dependent receptor compare
RR42_RS15720 -1.2 -4.3 hypothetical protein compare
RR42_RS04735 -1.2 -1.3 hypothetical protein compare
RR42_RS07360 -1.2 -2.2 ATPase compare
RR42_RS13620 -1.2 -1.3 ferredoxin compare
RR42_RS37455 -1.2 -1.7 hypothetical protein compare
RR42_RS12050 -1.2 -6.0 DNA polymerase compare
RR42_RS07380 -1.2 -3.3 dihydrolipoamide dehydrogenase compare
RR42_RS06255 -1.2 -2.6 lipoprotein compare
RR42_RS12550 -1.2 -2.3 hypothetical protein compare
RR42_RS31505 -1.2 -2.2 hypothetical protein compare
RR42_RS19065 -1.1 -7.5 transcriptional regulator compare
RR42_RS07565 -1.1 -5.4 transcription accessory protein compare
RR42_RS02150 -1.1 -2.0 membrane protein compare
RR42_RS04145 -1.1 -0.8 peptidase A24 compare
RR42_RS15710 -1.1 -4.5 LPS biosynthesis protein compare
RR42_RS06015 -1.1 -7.1 recombinase compare
RR42_RS14965 -1.1 -3.2 hypothetical protein compare
RR42_RS12345 -1.1 -2.7 hypothetical protein compare
RR42_RS08880 -1.1 -2.1 hypothetical protein compare
RR42_RS15740 -1.1 -2.3 hypothetical protein compare
RR42_RS34815 -1.1 -2.0 diguanylate cyclase compare
RR42_RS08505 -1.1 -3.2 DNA-binding protein compare
RR42_RS17050 -1.1 -4.3 phosphoribosylglycinamide formyltransferase compare
RR42_RS01880 -1.1 -4.7 cytochrome oxidase subunit I compare
RR42_RS17930 -1.1 -4.4 RNA pyrophosphohydrolase compare
RR42_RS27090 -1.1 -2.3 chemotaxis protein CheV compare
RR42_RS14355 -1.1 -3.6 DNA methylase N-4 compare
RR42_RS37135 -1.1 -2.0 cold-shock protein compare
RR42_RS19410 -1.1 -3.7 GntR family transcriptional regulator compare
RR42_RS15420 -1.1 -1.2 hypothetical protein compare
RR42_RS18850 -1.1 -1.1 preprotein translocase subunit TatC compare
RR42_RS17355 -1.0 -1.1 hypothetical protein compare
RR42_RS04700 -1.0 -1.2 ribonuclease G compare
RR42_RS33695 -1.0 -1.7 membrane protein compare
RR42_RS18815 -1.0 -4.0 cytochrome C compare
RR42_RS12015 -1.0 -2.0 dihydrolipoamide acyltransferase compare
RR42_RS28850 -1.0 -3.0 transcriptional regulator compare
RR42_RS01045 -1.0 -2.1 Fur family transcriptional regulator compare
RR42_RS14885 -1.0 -2.2 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS00830 -1.0 -4.3 cell division protein FtsN compare
RR42_RS17390 -1.0 -5.0 ATP-dependent DNA helicase RecG compare
RR42_RS22360 -1.0 -1.7 hypothetical protein compare
RR42_RS00420 -1.0 -2.9 hypothetical protein compare
RR42_RS37330 -1.0 -4.5 1,4-D-glucanase compare
RR42_RS00725 -1.0 -2.8 hypothetical protein compare
RR42_RS33575 -1.0 -1.6 hypothetical protein compare
RR42_RS09085 -1.0 -1.5 C4-dicarboxylate ABC transporter permease compare
RR42_RS17180 -1.0 -4.4 hypothetical protein compare
RR42_RS00440 -1.0 -1.1 hypothetical protein compare
RR42_RS19090 -1.0 -1.2 cytochrome C compare
RR42_RS18380 -1.0 -2.3 hypothetical protein compare
RR42_RS06630 -1.0 -1.6 integration host factor subunit alpha compare
RR42_RS18365 -1.0 -1.8 GTP-binding protein compare
RR42_RS10310 -1.0 -1.9 NADPH:quinone reductase compare
RR42_RS13025 -1.0 -3.4 hypothetical protein compare
RR42_RS21720 -1.0 -2.1 acetoin catabolism protein X compare
RR42_RS08025 -1.0 -1.3 phage Gp37Gp68 compare
RR42_RS07620 -1.0 -3.6 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS21435 -1.0 -2.5 hypothetical protein compare
RR42_RS07310 -1.0 -2.0 hypothetical protein compare
RR42_RS25510 -0.9 -1.2 short-chain dehydrogenase compare
RR42_RS00380 -0.9 -4.9 GntR family transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source Sodium nitrate in Cupriavidus basilensis FW507-4G11

For nitrogen source Sodium nitrate across organisms