Experiment set3IT026 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium nitrate nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS08210 +1.4 1.6 hypothetical protein compare
RR42_RS08000 +1.3 1.8 hypothetical protein compare
RR42_RS14520 +1.2 1.9 mobilization protein compare
RR42_RS19045 +1.2 1.7 frataxin compare
RR42_RS35250 +1.1 2.0 alpha/beta hydrolase compare
RR42_RS15245 +1.1 3.0 alpha/beta hydrolase compare
RR42_RS02470 +1.1 2.5 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS25455 +1.0 1.7 acetyl-CoA acetyltransferase compare
RR42_RS24820 +1.0 2.3 hypothetical protein compare
RR42_RS32960 +1.0 1.6 2-dehydropantoate 2-reductase compare
RR42_RS32090 +1.0 2.6 hypothetical protein compare
RR42_RS31330 +1.0 1.2 LysR family transcriptional regulator compare
RR42_RS10920 +1.0 2.3 hypothetical protein compare
RR42_RS36835 +1.0 2.5 cytochrome P450 compare
RR42_RS08330 +1.0 1.4 hypothetical protein compare
RR42_RS21955 +1.0 1.6 hypothetical protein compare
RR42_RS29610 +0.9 1.5 cytochrome C2 compare
RR42_RS19635 +0.9 1.9 hypothetical protein compare
RR42_RS03620 +0.9 2.3 lipid A biosynthesis lauroyl acyltransferase compare
RR42_RS31910 +0.9 1.6 acyl-CoA dehydrogenase compare
RR42_RS34935 +0.9 1.5 cytochrome C oxidase subunit IV compare
RR42_RS10515 +0.9 2.9 fumarylacetoacetate hydrolase compare
RR42_RS12130 +0.9 2.3 hypothetical protein compare
RR42_RS23870 +0.9 2.2 hypothetical protein compare
RR42_RS30340 +0.9 1.7 ABC transporter permease compare
RR42_RS28400 +0.9 1.5 CoA-transferase compare
RR42_RS27480 +0.8 2.1 AraC family transcriptional regulator compare
RR42_RS23220 +0.8 2.0 MarR family transcriptional regulator compare
RR42_RS07240 +0.8 1.0 hypothetical protein compare
RR42_RS27290 +0.8 1.7 hypothetical protein compare
RR42_RS02030 +0.8 2.0 membrane protein compare
RR42_RS14930 +0.8 3.0 biopolymer transporter ExbD compare
RR42_RS09565 +0.8 1.8 hypothetical protein compare
RR42_RS02420 +0.8 0.9 SAM-dependent methyltransferase compare
RR42_RS25600 +0.8 1.5 AraC family transcriptional regulator compare
RR42_RS07825 +0.8 1.7 D-amino acid oxidase compare
RR42_RS31435 +0.8 1.1 hypothetical protein compare
RR42_RS29280 +0.7 1.0 hypothetical protein compare
RR42_RS27855 +0.7 1.8 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase compare
RR42_RS09835 +0.7 1.3 chemotaxis protein compare
RR42_RS27180 +0.7 2.6 alkylhydroperoxidase compare
RR42_RS04850 +0.7 1.9 hypothetical protein compare
RR42_RS11280 +0.7 1.2 phenylacetic acid degradation protein compare
RR42_RS08945 +0.7 0.9 hypothetical protein compare
RR42_RS20695 +0.7 4.0 TetR family transcriptional regulator compare
RR42_RS27885 +0.7 3.1 2-keto-4-pentenoate hydratase compare
RR42_RS23995 +0.7 1.7 hypothetical protein compare
RR42_RS34150 +0.7 2.9 cupin compare
RR42_RS01705 +0.7 1.8 Fis family transcriptional regulator compare
RR42_RS05755 +0.7 1.7 enoyl-CoA hydratase compare
RR42_RS05810 +0.7 1.3 RNA polymerase sigma factor compare
RR42_RS31565 +0.7 3.3 50S ribosomal protein L21 compare
RR42_RS02590 +0.7 1.9 amino acid ABC transporter ATP-binding protein compare
RR42_RS03530 +0.7 0.9 hypothetical protein compare
RR42_RS35220 +0.7 1.5 peptide ABC transporter ATP-binding protein compare
RR42_RS31715 +0.7 1.9 hypothetical protein compare
RR42_RS10400 +0.7 1.8 hypothetical protein compare
RR42_RS21850 +0.7 2.0 3-oxoadipate enol-lactonase compare
RR42_RS21755 +0.7 1.6 shikimate dehydrogenase compare
RR42_RS24520 +0.7 1.5 hypothetical protein compare
RR42_RS19860 +0.7 0.8 tartronate semialdehyde reductase compare
RR42_RS14335 +0.7 2.0 sporulation protein compare
RR42_RS22680 +0.7 1.6 enoyl-CoA hydratase compare
RR42_RS21690 +0.7 0.8 acetyltransferase compare
RR42_RS35995 +0.7 2.2 membrane protein compare
RR42_RS01400 +0.6 3.2 5-formyltetrahydrofolate cyclo-ligase compare
RR42_RS32735 +0.6 2.2 3-methylcrotonyl-CoA carboxylase compare
RR42_RS23595 +0.6 1.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS29490 +0.6 1.7 toxin HipA compare
RR42_RS04110 +0.6 1.0 pilus assembly protein TadG compare
RR42_RS09255 +0.6 2.1 copper resistance protein CopQ compare
RR42_RS22030 +0.6 1.6 hypothetical protein compare
RR42_RS33815 +0.6 0.7 isochorismatase compare
RR42_RS05500 +0.6 0.7 preprotein translocase subunit SecG compare
RR42_RS13260 +0.6 2.5 CoA-transferase compare
RR42_RS26220 +0.6 1.3 citrate lyase subunit beta compare
RR42_RS20360 +0.6 1.5 AsnC family transcriptional regulator compare
RR42_RS06235 +0.6 1.5 peptidase M50 compare
RR42_RS11410 +0.6 1.4 hypothetical protein compare
RR42_RS05935 +0.6 2.2 membrane protein compare
RR42_RS09245 +0.6 2.2 hypothetical protein compare
RR42_RS01450 +0.6 2.1 hypothetical protein compare
RR42_RS23650 +0.6 1.8 flagellar protein compare
RR42_RS32700 +0.6 2.3 alpha/beta hydrolase compare
RR42_RS34680 +0.6 0.8 short-chain dehydrogenase compare
RR42_RS26660 +0.6 1.8 LysR family transcriptional regulator compare
RR42_RS23690 +0.6 1.9 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
RR42_RS35110 +0.6 1.5 hypothetical protein compare
RR42_RS01130 +0.6 2.8 haloacid dehalogenase compare
RR42_RS10445 +0.6 2.7 heat-shock protein Hsp20 compare
RR42_RS34060 +0.6 1.4 alpha/beta hydrolase compare
RR42_RS36400 +0.6 0.7 hypothetical protein compare
RR42_RS12095 +0.6 2.4 monooxygenase compare
RR42_RS32670 +0.6 0.7 phenol hydroxylase compare
RR42_RS06230 +0.6 2.3 hypothetical protein compare
RR42_RS16510 +0.6 1.0 hypothetical protein compare
RR42_RS18705 +0.6 2.7 phage/plasmid-like protein TIGR03299 compare
RR42_RS02840 +0.6 2.1 cation transporter compare
RR42_RS07925 +0.5 2.3 amidase compare
RR42_RS35450 +0.5 0.8 hypothetical protein compare
RR42_RS22580 +0.5 2.9 hypothetical protein compare
RR42_RS19715 +0.5 2.8 flavocytochrome C compare
RR42_RS30435 +0.5 1.7 twin-arginine translocation pathway signal protein compare
RR42_RS03670 +0.5 1.0 isochorismatase compare
RR42_RS16575 +0.5 2.3 acyl-CoA dehydrogenase compare
RR42_RS32085 +0.5 0.8 hypothetical protein compare
RR42_RS36355 +0.5 1.7 (2Fe-2S)-binding protein compare
RR42_RS21510 +0.5 1.8 lysine transporter LysE compare
RR42_RS22535 +0.5 0.8 ArsR family transcriptional regulator compare
RR42_RS09310 +0.5 1.2 IclR family transcriptional regulator compare
RR42_RS20320 +0.5 1.6 ornithine cyclodeaminase compare
RR42_RS10010 +0.5 1.7 3-oxoadipate CoA-transferase compare
RR42_RS03465 +0.5 1.8 biopolymer transporter ExbD compare
RR42_RS07115 +0.5 0.6 hypothetical protein compare
RR42_RS14395 +0.5 0.6 entericidin compare
RR42_RS26555 +0.5 0.9 tRNA-Met compare
RR42_RS23125 +0.5 1.0 hypothetical protein compare
RR42_RS14880 +0.5 1.7 hypothetical protein compare
RR42_RS07040 +0.5 1.8 hypothetical protein compare
RR42_RS02225 +0.5 1.8 ABC transporter substrate-binding protein compare
RR42_RS34570 +0.5 1.0 hypothetical protein compare
RR42_RS32520 +0.5 1.2 cytochrome C compare
RR42_RS07940 +0.5 1.0 ABC transporter permease compare
RR42_RS10510 +0.5 1.6 dihydrofolate reductase compare
RR42_RS03130 +0.5 2.2 hypothetical protein compare
RR42_RS28550 +0.5 1.6 enoyl-CoA hydratase compare
RR42_RS18335 +0.5 1.9 nitrate ABC transporter ATP-binding protein compare
RR42_RS33910 +0.5 1.8 LysR family transcriptional regulator compare
RR42_RS23295 +0.5 0.8 hypothetical protein compare
RR42_RS21175 +0.5 1.9 transporter compare
RR42_RS19625 +0.5 1.6 hypothetical protein compare
RR42_RS23270 +0.5 2.1 pyridoxamine 5'-phosphate oxidase compare
RR42_RS07900 +0.5 1.8 allantoate amidohydrolase compare
RR42_RS15030 +0.5 2.4 3-mercaptopyruvate sulfurtransferase compare
RR42_RS16790 +0.5 1.7 enoyl-CoA hydratase compare
RR42_RS19070 +0.5 1.8 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS22765 +0.5 2.6 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
RR42_RS20350 +0.5 1.2 hypothetical protein compare
RR42_RS05700 +0.5 1.7 hypothetical protein compare
RR42_RS23970 +0.5 1.5 hypothetical protein compare
RR42_RS06195 +0.5 1.2 anhydrase compare
RR42_RS32180 +0.5 1.2 tripartite tricarboxylate transporter TctB compare
RR42_RS28610 +0.5 2.1 acyl-CoA dehydrogenase compare
RR42_RS30625 +0.5 1.9 cob(II)yrinic acid a,c-diamide reductase compare
RR42_RS15205 +0.5 1.4 pyridoxamine 5'-phosphate oxidase compare
RR42_RS34775 +0.5 1.4 short-chain dehydrogenase compare
RR42_RS00960 +0.5 1.7 prolyl-tRNA synthetase compare
RR42_RS15365 +0.5 2.8 flavin reductase compare
RR42_RS10005 +0.5 2.7 3-oxoadipate CoA-transferase compare
RR42_RS35320 +0.5 2.4 membrane protein compare
RR42_RS33810 +0.5 2.1 NIPSNAP family containing protein compare
RR42_RS34330 +0.5 1.4 hypothetical protein compare
RR42_RS33285 +0.5 2.1 membrane protein compare
RR42_RS35290 +0.5 1.3 Fe-S oxidoreductase compare
RR42_RS04060 +0.5 0.8 hypothetical protein compare
RR42_RS05385 +0.5 1.2 LOG family protein compare
RR42_RS27500 +0.5 1.7 hypothetical protein compare
RR42_RS32445 +0.5 1.4 shikimate dehydrogenase compare
RR42_RS36470 +0.5 2.5 hypothetical protein compare
RR42_RS19260 +0.5 2.1 nitrilotriacetate monooxygenase compare
RR42_RS26180 +0.5 1.5 hypothetical protein compare
RR42_RS33660 +0.5 0.8 dihydrofolate reductase compare
RR42_RS13970 +0.5 2.1 hypothetical protein compare
RR42_RS10465 +0.5 0.8 hypothetical protein compare
RR42_RS12430 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS07715 +0.5 2.0 hydrolase compare
RR42_RS34710 +0.5 2.0 chemotaxis protein CheY compare
RR42_RS17875 +0.5 1.9 histidine kinase compare
RR42_RS04255 +0.5 0.8 chemotaxis protein CheW compare
RR42_RS24790 +0.5 0.8 LysR family transcriptional regulator compare
RR42_RS15290 +0.5 1.0 cupin compare
RR42_RS31240 +0.5 1.7 AMP-dependent synthetase compare
RR42_RS06680 +0.5 2.2 hypothetical protein compare
RR42_RS08175 +0.5 0.6 hypothetical protein compare
RR42_RS04980 +0.5 0.9 hypothetical protein compare
RR42_RS00390 +0.5 2.1 amidohydrolase compare
RR42_RS26735 +0.5 2.2 hypothetical protein compare
RR42_RS09420 +0.4 2.2 TetR family transcriptional regulator compare
RR42_RS12280 +0.4 1.4 aliphatic sulfonate ABC transporter ATP-binding protein compare
RR42_RS15505 +0.4 2.2 hypothetical protein compare
RR42_RS11605 +0.4 1.6 OsmY domain-containing protein compare
RR42_RS00370 +0.4 1.8 Asp/Glu/hydantoin racemase compare
RR42_RS15340 +0.4 2.0 hypothetical protein compare
RR42_RS05620 +0.4 0.8 esterase compare
RR42_RS33400 +0.4 2.6 hypothetical protein compare
RR42_RS06395 +0.4 2.7 TetR family transcriptional regulator compare
RR42_RS23565 +0.4 0.5 flagellar motor switch protein G compare
RR42_RS10540 +0.4 1.3 acetyl-CoA acetyltransferase compare
RR42_RS08750 +0.4 1.8 hemerythrin compare
RR42_RS02210 +0.4 0.6 succinate dehydrogenase compare
RR42_RS15060 +0.4 1.2 membrane protein compare
RR42_RS30485 +0.4 2.0 hypothetical protein compare
RR42_RS07630 +0.4 0.9 methyltransferase type 12 compare
RR42_RS36560 +0.4 1.3 ABC transporter substrate-binding protein compare
RR42_RS29520 +0.4 2.4 acyl-CoA hydrolase compare
RR42_RS00990 +0.4 1.8 GntR family transcriptional regulator compare
RR42_RS37425 +0.4 2.0 hypothetical protein compare
RR42_RS17015 +0.4 1.3 nicotinate-nucleotide pyrophosphorylase compare
RR42_RS35240 +0.4 0.8 acyl-CoA dehydrogenase compare
RR42_RS00215 +0.4 1.5 branched-chain amino acid ABC transporter ATP-binding protein compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Sodium nitrate in Cupriavidus basilensis FW507-4G11

For nitrogen source Sodium nitrate across organisms