Experiment set3IT026 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 8; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.6 -5.3 NUDIX domain-containing protein compare
ABZR87_RS08630 -6.7 -4.7 dihydroorotase compare
ABZR87_RS01255 -6.4 -19.2 LysR substrate-binding domain-containing protein compare
ABZR87_RS08695 -4.9 -20.2 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS04975 -4.7 -3.3 peptide deformylase compare
ABZR87_RS00435 -4.7 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS05305 -4.4 -13.1 TetR family transcriptional regulator compare
ABZR87_RS22920 -4.3 -8.3 phosphogluconate dehydratase compare
ABZR87_RS10170 -4.2 -6.3 RseA family anti-sigma factor compare
ABZR87_RS05100 -4.2 -6.9 RNA polymerase-binding protein DksA compare
ABZR87_RS08795 -4.2 -5.0 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS12785 -4.2 -2.9 endopeptidase La compare
ABZR87_RS07050 -4.2 -2.7 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS06400 -4.0 -8.3 response regulator transcription factor compare
ABZR87_RS14965 -3.9 -5.9 DUF3619 family protein compare
ABZR87_RS02440 -3.8 -10.7 twin-arginine translocase subunit TatC compare
ABZR87_RS08980 -3.8 -5.7 cell envelope integrity protein TolA compare
ABZR87_RS14115 -3.7 -2.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS08990 -3.6 -6.9 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS14605 -3.5 -15.5 aconitate hydratase AcnA compare
ABZR87_RS16960 -3.5 -4.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS02545 -3.5 -9.2 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS02850 -3.4 -3.3 elongation factor Tu compare
ABZR87_RS08970 -3.4 -10.6 protein TolQ compare
ABZR87_RS10980 -3.3 -1.8 tRNA-Leu compare
ABZR87_RS02445 -3.3 -5.5 Sec-independent protein translocase protein TatB compare
ABZR87_RS06385 -3.2 -9.6 CHASE3 domain-containing protein compare
ABZR87_RS10550 -3.2 -2.6 outer membrane protein assembly factor BamC compare
ABZR87_RS08700 -3.1 -11.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS09935 -3.1 -3.0 amino acid aminotransferase compare
ABZR87_RS07510 -3.1 -5.6 LysR family transcriptional regulator compare
ABZR87_RS07035 -3.0 -9.9 RNase adapter RapZ compare
ABZR87_RS15715 -3.0 -10.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS09615 -3.0 -1.8 50S ribosomal protein L19 compare
ABZR87_RS08985 -3.0 -13.5 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS11940 -2.9 -2.8 SsrA-binding protein SmpB compare
ABZR87_RS08625 -2.9 -2.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS10195 -2.8 -3.6 signal peptidase I compare
ABZR87_RS04940 -2.8 -8.1 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02075 -2.8 -2.9 23S ribosomal RNA compare
ABZR87_RS14950 -2.8 -1.9 acetolactate synthase small subunit compare
ABZR87_RS01615 -2.7 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS02590 -2.7 -7.8 3-dehydroquinate synthase compare
ABZR87_RS01980 -2.7 -3.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS04865 -2.6 -5.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02640 -2.6 -13.1 diaminopimelate decarboxylase compare
ABZR87_RS11330 -2.6 -4.5 transcriptional repressor LexA compare
ABZR87_RS01275 -2.5 -6.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS12790 -2.5 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS13300 -2.5 -8.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS16170 -2.5 -4.4 argininosuccinate lyase compare
ABZR87_RS01810 -2.5 -3.3 glutamate 5-kinase compare
ABZR87_RS01245 -2.4 -4.7 Dps family protein compare
ABZR87_RS00970 -2.4 -1.7 molecular chaperone DnaJ compare
ABZR87_RS13645 -2.4 -1.6 hypothetical protein compare
ABZR87_RS13790 -2.4 -7.7 chorismate synthase compare
ABZR87_RS21950 -2.3 -7.7 hypothetical protein compare
ABZR87_RS05590 -2.3 -1.6 orotate phosphoribosyltransferase compare
ABZR87_RS07355 -2.3 -7.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS02535 -2.3 -5.7 phospholipid-binding protein MlaC compare
ABZR87_RS10785 -2.3 -3.8 exodeoxyribonuclease V subunit beta compare
ABZR87_RS14375 -2.3 -3.9 fumarate hydratase compare
ABZR87_RS10120 -2.3 -2.2 YceD family protein compare
ABZR87_RS07730 -2.3 -3.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS17145 -2.3 -12.5 AMP nucleosidase compare
ABZR87_RS02555 -2.2 -6.7 ABC transporter ATP-binding protein compare
ABZR87_RS10175 -2.2 -4.4 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS05645 -2.1 -5.0 SDR family oxidoreductase compare
ABZR87_RS06645 -2.1 -1.5 TlpA disulfide reductase family protein compare
ABZR87_RS01675 -2.1 -2.5 carbohydrate kinase family protein compare
ABZR87_RS11245 -2.1 -5.1 translational GTPase TypA compare
ABZR87_RS02385 -2.1 -4.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS00360 -2.1 -2.5 acyl-CoA desaturase compare
ABZR87_RS15705 -2.1 -4.6 UvrD-helicase domain-containing protein compare
ABZR87_RS07965 -2.1 -5.9 recombinase RecA compare
ABZR87_RS13705 -2.1 -1.5 integration host factor subunit alpha compare
ABZR87_RS00835 -2.1 -2.0 argininosuccinate synthase compare
ABZR87_RS02375 -2.0 -7.5 cytochrome c1 compare
ABZR87_RS14190 -2.0 -8.8 DUF2589 domain-containing protein compare
ABZR87_RS10780 -2.0 -3.0 PD-(D/E)XK nuclease family protein compare
ABZR87_RS02540 -2.0 -6.9 VacJ family lipoprotein compare
ABZR87_RS13175 -2.0 -1.9 tRNA-Leu compare
ABZR87_RS12795 -2.0 -5.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS14505 -2.0 -3.9 phosphoribosylanthranilate isomerase compare
ABZR87_RS02160 -2.0 -5.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS10610 -1.9 -1.3 inositol monophosphatase family protein compare
ABZR87_RS06350 -1.9 -9.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS06845 -1.9 -7.9 heme o synthase compare
ABZR87_RS09625 -1.9 -10.0 CobD/CbiB family protein compare
ABZR87_RS01085 -1.8 -6.4 rhombosortase compare
ABZR87_RS00875 -1.8 -4.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS12965 -1.8 -5.4 tail protein X compare
ABZR87_RS01035 -1.8 -6.2 histidine utilization repressor compare
ABZR87_RS08640 -1.8 -5.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS01240 -1.8 -7.5 catalase/peroxidase HPI compare
ABZR87_RS06745 -1.8 -5.6 S41 family peptidase compare
ABZR87_RS08720 -1.8 -9.4 HAD family hydrolase compare
ABZR87_RS14500 -1.7 -10.0 tryptophan synthase subunit beta compare
ABZR87_RS02380 -1.7 -8.1 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS13475 -1.7 -6.3 PAS domain S-box protein compare
ABZR87_RS16055 -1.7 -5.9 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS04125 -1.7 -3.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS07620 -1.7 -3.4 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS07055 -1.7 -8.3 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS17650 -1.7 -8.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07705 -1.7 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS21815 -1.6 -1.4 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS02550 -1.6 -4.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS01885 -1.6 -3.2 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS16080 -1.6 -2.8 P-II family nitrogen regulator compare
ABZR87_RS06455 -1.6 -2.5 IclR family transcriptional regulator compare
ABZR87_RS04105 -1.6 -2.9 ATP synthase subunit I compare
ABZR87_RS12145 -1.6 -5.8 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS08710 -1.6 -11.0 sugar transferase compare
ABZR87_RS05350 -1.6 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS16125 -1.6 -6.4 heme biosynthesis protein HemY compare
ABZR87_RS07635 -1.6 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS20555 -1.6 -3.4 helix-turn-helix transcriptional regulator compare
ABZR87_RS16185 -1.6 -1.7 dCTP deaminase compare
ABZR87_RS04995 -1.6 -2.7 DNA topoisomerase III compare
ABZR87_RS11195 -1.6 -5.9 pseudouridine synthase compare
ABZR87_RS14535 -1.5 -4.2 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02145 -1.5 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS01225 -1.5 -3.7 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS10565 -1.5 -1.8 cupin domain-containing protein compare
ABZR87_RS06705 -1.5 -8.6 glutamate--cysteine ligase compare
ABZR87_RS04265 -1.5 -6.6 phenylalanine 4-monooxygenase compare
ABZR87_RS07435 -1.5 -3.0 DUF502 domain-containing protein compare
ABZR87_RS12955 -1.5 -3.2 terminase endonuclease subunit compare
ABZR87_RS02595 -1.5 -7.4 shikimate kinase compare
ABZR87_RS03410 -1.5 -6.9 type II secretion system major pseudopilin GspG compare
ABZR87_RS01420 -1.5 -3.0 outer membrane protein assembly factor BamE compare
ABZR87_RS02155 -1.5 -5.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS20495 -1.5 -1.9 hypothetical protein compare
ABZR87_RS00440 -1.5 -6.5 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS16735 -1.5 -8.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS17270 -1.4 -1.7 hypothetical protein compare
ABZR87_RS09465 -1.4 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS17910 -1.4 -8.4 IclR family transcriptional regulator compare
ABZR87_RS13285 -1.4 -8.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS10240 -1.4 -1.0 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS14330 -1.4 -1.2 hypothetical protein compare
ABZR87_RS13290 -1.4 -2.7 3-ketoacyl-ACP reductase compare
ABZR87_RS10400 -1.4 -2.3 hypothetical protein compare
ABZR87_RS15440 -1.4 -1.3 ribonuclease G compare
ABZR87_RS15500 -1.4 -7.8 glycosyltransferase compare
ABZR87_RS14490 -1.4 -6.3 tryptophan synthase subunit alpha compare
ABZR87_RS11435 -1.4 -2.7 Mth938-like domain-containing protein compare
ABZR87_RS02655 -1.3 -6.9 anti-sigma factor compare
ABZR87_RS04270 -1.3 -3.5 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS05170 -1.3 -1.3 acetylglutamate kinase compare
ABZR87_RS08715 -1.3 -11.1 ATP-grasp domain-containing protein compare
ABZR87_RS08070 -1.3 -2.0 pyruvate kinase compare
ABZR87_RS08585 -1.3 -1.4 chemotaxis protein CheW compare
ABZR87_RS21285 -1.3 -2.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02220 -1.3 -5.8 redox-regulated ATPase YchF compare
ABZR87_RS05065 -1.3 -3.2 tyrosine recombinase XerC compare
ABZR87_RS00795 -1.3 -3.1 site-specific tyrosine recombinase XerD compare
ABZR87_RS12970 -1.3 -1.6 putative holin compare
ABZR87_RS11010 -1.3 -1.7 oxidative damage protection protein compare
ABZR87_RS04605 -1.3 -3.0 DUF2795 domain-containing protein compare
ABZR87_RS00285 -1.3 -0.9 acetylornithine transaminase compare
ABZR87_RS05570 -1.3 -4.5 lysophospholipid acyltransferase family protein compare
ABZR87_RS09940 -1.3 -7.4 excinuclease ABC subunit UvrB compare
ABZR87_RS07625 -1.2 -2.3 Holliday junction branch migration protein RuvA compare
ABZR87_RS21955 -1.2 -4.0 hypothetical protein compare
ABZR87_RS14970 -1.2 -1.9 DUF3106 domain-containing protein compare
ABZR87_RS09000 -1.2 -5.1 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS01685 -1.2 -3.6 histone H1-like DNA-binding protein compare
ABZR87_RS22325 -1.2 -3.3 H-NS histone family protein compare
ABZR87_RS03440 -1.2 -7.0 type II secretion system protein GspM compare
ABZR87_RS07380 -1.2 -8.0 FAD/FMN-binding oxidoreductase compare
ABZR87_RS22415 -1.2 -2.2 universal stress protein compare
ABZR87_RS05060 -1.2 -4.3 DUF484 family protein compare
ABZR87_RS01645 -1.2 -4.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS13350 -1.2 -3.6 potassium transporter Kup compare
ABZR87_RS12150 -1.2 -3.1 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS01855 -1.2 -6.0 A24 family peptidase compare
ABZR87_RS12345 -1.2 -1.2 dethiobiotin synthase compare
ABZR87_RS10190 -1.2 -4.8 translation elongation factor 4 compare
ABZR87_RS03460 -1.2 -6.5 type II secretion system inner membrane protein GspF compare
ABZR87_RS04235 -1.2 -5.7 heavy metal translocating P-type ATPase compare
ABZR87_RS08665 -1.2 -5.3 GNAT family N-acetyltransferase compare
ABZR87_RS09515 -1.2 -1.3 cysteine synthase CysM compare
ABZR87_RS08660 -1.1 -3.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS14890 -1.1 -1.1 preprotein translocase subunit SecG compare
ABZR87_RS04880 -1.1 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS18695 -1.1 -4.8 sugar-binding transcriptional regulator compare
ABZR87_RS12950 -1.1 -3.9 phage major capsid protein, P2 family compare
ABZR87_RS11125 -1.1 -4.1 cell division protein ZapE compare
ABZR87_RS11760 -1.1 -1.1 membrane protein compare
ABZR87_RS16250 -1.1 -3.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS02630 -1.1 -3.3 iron donor protein CyaY compare
ABZR87_RS05145 -1.1 -1.5 copper chaperone PCu(A)C compare
ABZR87_RS02035 -1.1 -4.6 substrate-binding domain-containing protein compare
ABZR87_RS16730 -1.1 -3.4 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS16130 -1.1 -3.0 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS14080 -1.1 -2.5 phosphate signaling complex protein PhoU compare
ABZR87_RS04860 -1.1 -2.9 phage holin family protein compare
ABZR87_RS17730 -1.1 -4.8 GntR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in soil experiments