Experiment set3IT025 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_866 -3.3 -3.1 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3143 -2.3 -3.9 RecA protein compare
Pf1N1B4_1307 -2.1 -3.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_4035 -2.1 -3.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2209 -1.9 -10.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2105 -1.9 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3906 -1.8 -5.0 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_769 -1.8 -7.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1191 -1.6 -3.1 hypothetical protein compare
Pf1N1B4_2005 -1.6 -2.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2004 -1.6 -2.3 putative membrane protein compare
Pf1N1B4_1472 -1.5 -2.2 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_1906 -1.4 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3833 -1.4 -7.3 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5095 -1.3 -2.8 hypothetical protein compare
Pf1N1B4_1975 -1.3 -1.7 Transcriptional regulator, AsnC family compare
Pf1N1B4_644 -1.3 -2.4 Cold shock protein CspC compare
Pf1N1B4_2401 -1.3 -2.7 Lipoprotein, putative compare
Pf1N1B4_3325 -1.3 -1.2 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_2856 -1.3 -3.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2106 -1.3 -2.7 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_5995 -1.3 -2.6 Transporter, MFS superfamily compare
Pf1N1B4_4335 -1.3 -2.5 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_1565 -1.2 -3.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_4039 -1.2 -5.6 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_3775 -1.2 -1.7 FIG00956876: hypothetical protein compare
Pf1N1B4_1568 -1.2 -2.8 Twin-arginine translocation protein TatB compare
Pf1N1B4_224 -1.2 -2.1 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_2912 -1.1 -2.2 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1234 -1.1 -3.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2171 -1.1 -2.4 Tyrosine recombinase XerC compare
Pf1N1B4_4518 -1.1 -2.4 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_4765 -1.1 -2.7 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_1008 -1.1 -1.6 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_2884 -1.1 -4.1 Paraquat-inducible protein A compare
Pf1N1B4_4038 -1.1 -2.3 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_4855 -1.1 -2.2 Response regulator compare
Pf1N1B4_5266 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_1115 -1.0 -6.3 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_1619 -1.0 -6.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_3985 -1.0 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_4166 -1.0 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_3408 -1.0 -2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_3869 -1.0 -7.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_3093 -1.0 -2.2 Outer membrane protein H precursor compare
Pf1N1B4_4509 -1.0 -1.6 Aldose 1-epimerase compare
Pf1N1B4_419 -1.0 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_412 -1.0 -1.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_126 -1.0 -1.5 Pirin compare
Pf1N1B4_1581 -1.0 -3.0 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_5659 -1.0 -7.3 NfuA Fe-S protein maturation compare
Pf1N1B4_574 -1.0 -2.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_1236 -1.0 -4.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_122 -1.0 -2.7 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_2711 -1.0 -2.6 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_3413 -1.0 -1.9 Transcriptional regulator, LysR family compare
Pf1N1B4_3036 -1.0 -1.6 Chemotaxis signal transduction protein compare
Pf1N1B4_5884 -1.0 -2.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_4250 -1.0 -1.2 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_3802 -1.0 -1.7 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_2114 -1.0 -4.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2943 -0.9 -2.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2433 -0.9 -2.6 FIG00953108: hypothetical protein compare
Pf1N1B4_4028 -0.9 -2.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2791 -0.9 -2.0 Putative inner membrane protein (Fragment) compare
Pf1N1B4_4119 -0.9 -2.0 dioxygenase compare
Pf1N1B4_4043 -0.9 -1.9 Type II and III secretion system family protein compare
Pf1N1B4_1403 -0.9 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_617 -0.9 -1.5 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_5294 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_3364 -0.9 -2.4 Cyn operon transcriptional activator compare
Pf1N1B4_3870 -0.9 -7.8 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_1159 -0.9 -2.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_554 -0.9 -2.3 Putative threonine efflux protein compare
Pf1N1B4_1617 -0.9 -4.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5864 -0.9 -1.6 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_5720 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_1869 -0.9 -4.8 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_4007 -0.9 -2.4 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_3871 -0.9 -7.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_483 -0.9 -1.6 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_1569 -0.9 -6.8 Twin-arginine translocation protein TatC compare
Pf1N1B4_4777 -0.9 -2.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_2003 -0.9 -3.3 FIG00956226: hypothetical protein compare
Pf1N1B4_1 -0.9 -1.5 Colicin V production protein compare
Pf1N1B4_1511 -0.9 -1.7 FIG027190: Putative transmembrane protein compare
Pf1N1B4_652 -0.9 -5.9 Sensory box histidine kinase compare
Pf1N1B4_327 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_981 -0.9 -2.6 UPF0246 protein YaaA compare
Pf1N1B4_5797 -0.9 -1.6 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_1691 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_2006 -0.9 -2.7 hypothetical protein compare
Pf1N1B4_4857 -0.9 -3.0 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_4156 -0.9 -1.7 putative secreted protein compare
Pf1N1B4_3983 -0.9 -2.7 cI compare
Pf1N1B4_2885 -0.9 -3.9 Paraquat-inducible protein A compare
Pf1N1B4_4004 -0.8 -1.9 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_4238 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_2853 -0.8 -1.2 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_3547 -0.8 -1.1 DNA-binding response regulator compare
Pf1N1B4_4040 -0.8 -2.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1116 -0.8 -6.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_3011 -0.8 -1.9 Tyrosine recombinase XerD compare
Pf1N1B4_3153 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2886 -0.8 -6.0 Paraquat-inducible protein B compare
Pf1N1B4_3559 -0.8 -6.4 Aromatic amino acid transport protein AroP compare
Pf1N1B4_1570 -0.8 -2.6 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_3872 -0.8 -5.3 Putative analog of CcoH, COG3198 compare
Pf1N1B4_2272 -0.8 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3613 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_1845 -0.8 -2.2 FIG00954395: hypothetical protein compare
Pf1N1B4_5509 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_34 -0.8 -1.6 Xanthine permease compare
Pf1N1B4_722 -0.8 -1.6 SAM-dependent methyltransferases compare
Pf1N1B4_1107 -0.8 -2.6 D-galactarate dehydratase (EC 4.2.1.42) compare
Pf1N1B4_2827 -0.8 -2.4 FIG00953980: hypothetical protein compare
Pf1N1B4_2807 -0.8 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_2196 -0.8 -3.0 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5383 -0.8 -5.3 hypothetical protein compare
Pf1N1B4_2224 -0.8 -1.4 FIG00953390: hypothetical protein compare
Pf1N1B4_2823 -0.8 -2.0 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_2322 -0.8 -1.6 FIG015547: peptidase, M16 family compare
Pf1N1B4_1878 -0.8 -5.2 Cytochrome c4 compare
Pf1N1B4_2453 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_2144 -0.8 -4.3 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_1042 -0.8 -1.3 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_960 -0.8 -5.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_4030 -0.8 -1.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_237 -0.7 -2.2 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_358 -0.7 -4.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_1094 -0.7 -1.8 FIG005080: Possible exported protein compare
Pf1N1B4_1870 -0.7 -2.0 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_3836 -0.7 -1.6 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_952 -0.7 -1.6 Cell division protein MraZ compare
Pf1N1B4_1871 -0.7 -3.0 Zinc uptake regulation protein ZUR compare
Pf1N1B4_4041 -0.7 -2.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_3595 -0.7 -1.5 Flagellin protein FlaG compare
Pf1N1B4_3795 -0.7 -1.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4632 -0.7 -2.2 Exonuclease SbcC compare
Pf1N1B4_4017 -0.7 -1.6 DNA-binding heavy metal response regulator compare
Pf1N1B4_962 -0.7 -4.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_4699 -0.7 -1.7 Multidrug translocase MdfA compare
Pf1N1B4_1366 -0.7 -1.5 FMN-dependent NADH-azoreductase compare
Pf1N1B4_1492 -0.7 -1.1 FIG00959437: hypothetical protein compare
Pf1N1B4_5090 -0.7 -1.7 glycosyl transferase, family 2 compare
Pf1N1B4_4957 -0.7 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_32 -0.7 -2.1 Transcriptional regulator, TetR family compare
Pf1N1B4_4972 -0.7 -1.7 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_2314 -0.7 -1.5 FIG028932: hypothetical protein compare
Pf1N1B4_656 -0.7 -4.3 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_4960 -0.7 -1.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_2048 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_4568 -0.7 -1.6 FIG00793915: hypothetical protein compare
Pf1N1B4_3451 -0.7 -2.4 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_3812 -0.7 -4.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_5107 -0.7 -1.8 Putative collagenase compare
Pf1N1B4_2456 -0.7 -1.6 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_2959 -0.7 -3.0 FIG067310: hypothetical protein compare
Pf1N1B4_2888 -0.7 -2.8 FIG00961017: hypothetical protein compare
Pf1N1B4_3149 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_2917 -0.7 -4.1 FIG140336: TPR domain protein compare
Pf1N1B4_1872 -0.7 -4.0 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_501 -0.7 -1.3 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_4757 -0.7 -3.0 FIG00958264: hypothetical protein compare
Pf1N1B4_3864 -0.7 -2.4 Recombination protein RecR compare
Pf1N1B4_5331 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_5602 -0.7 -2.5 6-aminohexanoate-dimer hydrolase (EC 3.5.1.46) compare
Pf1N1B4_1315 -0.7 -4.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_974 -0.7 -2.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_2612 -0.7 -2.3 Putative transport protein compare
Pf1N1B4_3168 -0.7 -2.1 AmpG permease compare
Pf1N1B4_3853 -0.7 -1.4 Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) compare
Pf1N1B4_5307 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_5330 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_230 -0.7 -1.5 FIG00953472: hypothetical protein compare
Pf1N1B4_4368 -0.7 -2.0 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_3918 -0.7 -1.5 Thiamin biosynthesis lipoprotein ApbE compare
Pf1N1B4_2421 -0.7 -1.7 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_403 -0.7 -1.0 FIG00965925: hypothetical protein compare
Pf1N1B4_4304 -0.6 -2.1 hypothetical protein compare
Pf1N1B4_5346 -0.6 -2.0 hypothetical protein compare
Pf1N1B4_2035 -0.6 -2.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_53 -0.6 -2.1 hypothetical protein compare
Pf1N1B4_2047 -0.6 -2.0 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_2352 -0.6 -3.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_201 -0.6 -1.1 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_4949 -0.6 -1.5 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_3685 -0.6 -2.4 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_1256 -0.6 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_4544 -0.6 -1.2 Uncharacterized protein ImpA compare
Pf1N1B4_379 -0.6 -2.2 Protein of unknown function UPF0060 compare
Pf1N1B4_2733 -0.6 -0.9 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_3647 -0.6 -4.6 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_1579 -0.6 -1.7 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_1235 -0.6 -2.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_4755 -0.6 -1.7 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_4946 -0.6 -2.0 putative aminotransferase compare
Pf1N1B4_2993 -0.6 -2.7 hypothetical protein compare
Pf1N1B4_164 -0.6 -1.3 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_4436 -0.6 -1.3 Glutaminase (EC 3.5.1.2) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments