Experiment set3IT025 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 7; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.5 -5.2 NUDIX domain-containing protein compare
ABZR87_RS08630 -5.7 -8.7 dihydroorotase compare
ABZR87_RS05100 -5.2 -5.1 RNA polymerase-binding protein DksA compare
ABZR87_RS00435 -4.5 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS07050 -4.1 -2.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS04975 -4.0 -3.9 peptide deformylase compare
ABZR87_RS05305 -3.7 -12.7 TetR family transcriptional regulator compare
ABZR87_RS08695 -3.7 -18.2 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS12785 -3.6 -6.0 endopeptidase La compare
ABZR87_RS16170 -3.6 -3.5 argininosuccinate lyase compare
ABZR87_RS11330 -3.4 -4.0 transcriptional repressor LexA compare
ABZR87_RS08795 -3.3 -5.6 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS01255 -3.3 -11.7 LysR substrate-binding domain-containing protein compare
ABZR87_RS10980 -3.3 -1.9 tRNA-Leu compare
ABZR87_RS07035 -3.3 -9.2 RNase adapter RapZ compare
ABZR87_RS13705 -3.3 -2.7 integration host factor subunit alpha compare
ABZR87_RS02850 -3.1 -3.6 elongation factor Tu compare
ABZR87_RS06400 -3.0 -11.0 response regulator transcription factor compare
ABZR87_RS08700 -3.0 -10.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS07730 -3.0 -2.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS16960 -2.9 -5.2 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS09615 -2.9 -1.9 50S ribosomal protein L19 compare
ABZR87_RS12790 -2.9 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06385 -2.9 -12.5 CHASE3 domain-containing protein compare
ABZR87_RS16270 -2.9 -2.1 cold-shock protein compare
ABZR87_RS04865 -2.9 -5.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02445 -2.9 -5.1 Sec-independent protein translocase protein TatB compare
ABZR87_RS05645 -2.9 -5.8 SDR family oxidoreductase compare
ABZR87_RS08625 -2.8 -1.9 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS15715 -2.7 -8.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS01245 -2.7 -3.2 Dps family protein compare
ABZR87_RS00340 -2.7 -3.4 50S ribosomal protein L33 compare
ABZR87_RS01615 -2.7 -1.4 RNB domain-containing ribonuclease compare
ABZR87_RS07510 -2.7 -5.9 LysR family transcriptional regulator compare
ABZR87_RS02545 -2.6 -8.5 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS10195 -2.6 -2.9 signal peptidase I compare
ABZR87_RS07355 -2.6 -8.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS14115 -2.6 -1.8 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS13300 -2.6 -8.5 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07635 -2.5 -1.7 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS04995 -2.5 -3.4 DNA topoisomerase III compare
ABZR87_RS09935 -2.4 -4.0 amino acid aminotransferase compare
ABZR87_RS00875 -2.4 -4.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS00970 -2.4 -1.6 molecular chaperone DnaJ compare
ABZR87_RS02075 -2.3 -2.9 23S ribosomal RNA compare
ABZR87_RS05590 -2.3 -1.6 orotate phosphoribosyltransferase compare
ABZR87_RS01225 -2.3 -3.6 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS11245 -2.3 -6.0 translational GTPase TypA compare
ABZR87_RS14605 -2.3 -13.7 aconitate hydratase AcnA compare
ABZR87_RS17145 -2.3 -13.9 AMP nucleosidase compare
ABZR87_RS08970 -2.2 -8.1 protein TolQ compare
ABZR87_RS22920 -2.2 -6.8 phosphogluconate dehydratase compare
ABZR87_RS12795 -2.2 -5.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS14965 -2.2 -4.2 DUF3619 family protein compare
ABZR87_RS11940 -2.2 -2.9 SsrA-binding protein SmpB compare
ABZR87_RS12965 -2.2 -3.7 tail protein X compare
ABZR87_RS10175 -2.2 -6.5 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS04940 -2.2 -7.9 PAS domain-containing sensor histidine kinase compare
ABZR87_RS08990 -2.2 -6.2 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS10785 -2.1 -3.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS00835 -2.1 -2.0 argininosuccinate synthase compare
ABZR87_RS02550 -2.1 -5.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS04270 -2.0 -4.9 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS05350 -2.0 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS02440 -2.0 -8.7 twin-arginine translocase subunit TatC compare
ABZR87_RS14510 -2.0 -5.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS08985 -2.0 -9.7 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS07625 -2.0 -2.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS20690 -2.0 -2.9 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS14190 -1.9 -9.2 DUF2589 domain-containing protein compare
ABZR87_RS10170 -1.9 -4.7 RseA family anti-sigma factor compare
ABZR87_RS13290 -1.9 -5.2 3-ketoacyl-ACP reductase compare
ABZR87_RS17650 -1.9 -7.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS00360 -1.9 -2.0 acyl-CoA desaturase compare
ABZR87_RS10610 -1.9 -1.2 inositol monophosphatase family protein compare
ABZR87_RS08980 -1.8 -3.1 cell envelope integrity protein TolA compare
ABZR87_RS07620 -1.8 -3.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS14375 -1.8 -3.7 fumarate hydratase compare
ABZR87_RS01675 -1.8 -2.4 carbohydrate kinase family protein compare
ABZR87_RS01685 -1.8 -8.1 histone H1-like DNA-binding protein compare
ABZR87_RS02540 -1.8 -6.9 VacJ family lipoprotein compare
ABZR87_RS15705 -1.7 -4.5 UvrD-helicase domain-containing protein compare
ABZR87_RS06745 -1.7 -5.7 S41 family peptidase compare
ABZR87_RS10190 -1.7 -7.5 translation elongation factor 4 compare
ABZR87_RS11435 -1.7 -2.9 Mth938-like domain-containing protein compare
ABZR87_RS14950 -1.6 -1.9 acetolactate synthase small subunit compare
ABZR87_RS10565 -1.6 -1.6 cupin domain-containing protein compare
ABZR87_RS08660 -1.6 -4.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS12150 -1.6 -2.3 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS04880 -1.6 -8.5 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS16185 -1.6 -2.3 dCTP deaminase compare
ABZR87_RS02590 -1.6 -6.7 3-dehydroquinate synthase compare
ABZR87_RS14890 -1.6 -1.4 preprotein translocase subunit SecG compare
ABZR87_RS23095 -1.6 -1.6 MarR family transcriptional regulator compare
ABZR87_RS01035 -1.6 -3.9 histidine utilization repressor compare
ABZR87_RS02640 -1.6 -9.5 diaminopimelate decarboxylase compare
ABZR87_RS20555 -1.5 -4.5 helix-turn-helix transcriptional regulator compare
ABZR87_RS12970 -1.5 -2.7 putative holin compare
ABZR87_RS08720 -1.5 -7.9 HAD family hydrolase compare
ABZR87_RS18695 -1.5 -6.3 sugar-binding transcriptional regulator compare
ABZR87_RS05170 -1.5 -1.0 acetylglutamate kinase compare
ABZR87_RS10780 -1.5 -3.1 PD-(D/E)XK nuclease family protein compare
ABZR87_RS07965 -1.5 -4.7 recombinase RecA compare
ABZR87_RS07055 -1.5 -8.3 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS08710 -1.5 -11.2 sugar transferase compare
ABZR87_RS21950 -1.5 -7.9 hypothetical protein compare
ABZR87_RS04125 -1.4 -3.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS09465 -1.4 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS06645 -1.4 -2.3 TlpA disulfide reductase family protein compare
ABZR87_RS01745 -1.4 -4.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS02555 -1.4 -5.2 ABC transporter ATP-binding protein compare
ABZR87_RS08715 -1.4 -11.2 ATP-grasp domain-containing protein compare
ABZR87_RS04105 -1.4 -2.8 ATP synthase subunit I compare
ABZR87_RS10240 -1.4 -0.9 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS12955 -1.3 -3.7 terminase endonuclease subunit compare
ABZR87_RS15505 -1.3 -1.3 DNA polymerase III subunit alpha compare
ABZR87_RS09625 -1.3 -7.8 CobD/CbiB family protein compare
ABZR87_RS04265 -1.3 -6.9 phenylalanine 4-monooxygenase compare
ABZR87_RS01275 -1.3 -4.7 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS01640 -1.3 -4.4 TlpA disulfide reductase family protein compare
ABZR87_RS00440 -1.3 -6.4 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS17235 -1.3 -4.0 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS02535 -1.3 -4.6 phospholipid-binding protein MlaC compare
ABZR87_RS15500 -1.3 -6.5 glycosyltransferase compare
ABZR87_RS13475 -1.3 -5.1 PAS domain S-box protein compare
ABZR87_RS11015 -1.3 -3.4 amino-acid N-acetyltransferase compare
ABZR87_RS15440 -1.3 -1.2 ribonuclease G compare
ABZR87_RS12950 -1.3 -4.0 phage major capsid protein, P2 family compare
ABZR87_RS13790 -1.3 -5.3 chorismate synthase compare
ABZR87_RS01270 -1.3 -5.6 ATP-dependent DNA helicase RecG compare
ABZR87_RS03410 -1.3 -5.2 type II secretion system major pseudopilin GspG compare
ABZR87_RS10900 -1.2 -3.8 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS01085 -1.2 -5.5 rhombosortase compare
ABZR87_RS06455 -1.2 -2.3 IclR family transcriptional regulator compare
ABZR87_RS00285 -1.2 -0.8 acetylornithine transaminase compare
ABZR87_RS10930 -1.2 -1.8 outer membrane protein assembly factor BamB compare
ABZR87_RS09000 -1.2 -6.0 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS10120 -1.2 -1.5 YceD family protein compare
ABZR87_RS13645 -1.2 -1.2 hypothetical protein compare
ABZR87_RS08670 -1.2 -7.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS21285 -1.2 -2.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06705 -1.2 -7.6 glutamate--cysteine ligase compare
ABZR87_RS01980 -1.2 -1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS01885 -1.2 -2.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS16055 -1.2 -4.2 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS06350 -1.2 -7.2 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS07705 -1.2 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS00060 -1.1 -4.8 cobalamin-binding protein compare
ABZR87_RS02385 -1.1 -3.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS14970 -1.1 -1.9 DUF3106 domain-containing protein compare
ABZR87_RS16125 -1.1 -5.0 heme biosynthesis protein HemY compare
ABZR87_RS02380 -1.1 -6.7 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS06845 -1.1 -6.2 heme o synthase compare
ABZR87_RS17310 -1.1 -4.1 PadR family transcriptional regulator compare
ABZR87_RS02220 -1.1 -5.4 redox-regulated ATPase YchF compare
ABZR87_RS20495 -1.1 -1.6 hypothetical protein compare
ABZR87_RS06855 -1.1 -2.3 RNA polymerase sigma factor RpoH compare
ABZR87_RS02655 -1.1 -6.1 anti-sigma factor compare
ABZR87_RS08650 -1.1 -5.6 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS20680 -1.1 -3.4 SDR family oxidoreductase compare
ABZR87_RS01760 -1.1 -1.1 PP0621 family protein compare
ABZR87_RS06030 -1.1 -1.1 AraC family transcriptional regulator compare
ABZR87_RS09820 -1.1 -2.5 RidA family protein compare
ABZR87_RS08640 -1.1 -3.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS12345 -1.0 -1.1 dethiobiotin synthase compare
ABZR87_RS15775 -1.0 -3.9 4-carboxymuconolactone decarboxylase compare
ABZR87_RS12960 -1.0 -1.3 head completion/stabilization protein compare
ABZR87_RS04780 -1.0 -2.6 nitronate monooxygenase family protein compare
ABZR87_RS14500 -1.0 -7.1 tryptophan synthase subunit beta compare
ABZR87_RS14505 -1.0 -3.3 phosphoribosylanthranilate isomerase compare
ABZR87_RS13285 -1.0 -7.0 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS02160 -1.0 -4.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS12975 -1.0 -2.6 phage holin family protein compare
ABZR87_RS02595 -1.0 -6.4 shikimate kinase compare
ABZR87_RS16720 -1.0 -1.8 collagen-like triple helix repeat-containing protein compare
ABZR87_RS02375 -1.0 -5.7 cytochrome c1 compare
ABZR87_RS00325 -1.0 -1.6 peptidylprolyl isomerase compare
ABZR87_RS08725 -1.0 -8.6 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS03440 -1.0 -5.9 type II secretion system protein GspM compare
ABZR87_RS03435 -1.0 -4.6 type II secretion system protein GspL compare
ABZR87_RS19205 -1.0 -3.2 hypothetical protein compare
ABZR87_RS08665 -1.0 -4.6 GNAT family N-acetyltransferase compare
ABZR87_RS07470 -0.9 -4.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS22690 -0.9 -1.9 XRE family transcriptional regulator compare
ABZR87_RS13315 -0.9 -5.6 RluA family pseudouridine synthase compare
ABZR87_RS03915 -0.9 -6.0 UvrD-helicase domain-containing protein compare
ABZR87_RS04235 -0.9 -5.8 heavy metal translocating P-type ATPase compare
ABZR87_RS10400 -0.9 -1.6 hypothetical protein compare
ABZR87_RS08705 -0.9 -8.2 glycosyltransferase family 4 protein compare
ABZR87_RS17910 -0.9 -5.0 IclR family transcriptional regulator compare
ABZR87_RS17240 -0.9 -4.2 alkyl hydroperoxide reductase subunit F compare
ABZR87_RS13250 -0.9 -2.3 phosphoserine phosphatase SerB compare
ABZR87_RS02035 -0.9 -3.7 substrate-binding domain-containing protein compare
ABZR87_RS16735 -0.9 -6.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS12945 -0.9 -2.4 GPO family capsid scaffolding protein compare
ABZR87_RS07710 -0.9 -4.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS20440 -0.9 -1.0 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS01280 -0.9 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS06760 -0.9 -3.8 glutaredoxin 3 compare
ABZR87_RS01240 -0.9 -5.7 catalase/peroxidase HPI compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in soil experiments