Experiment set3IT024 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with 5-Hydroxymethylfurfural 2.5 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_769 -2.7 -8.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3467 -2.1 -3.5 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_3143 -1.8 -3.5 RecA protein compare
Pf1N1B4_2005 -1.7 -2.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2114 -1.6 -5.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2939 -1.6 -5.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_4824 -1.5 -3.0 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_2106 -1.5 -3.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_4603 -1.5 -2.0 hypothetical protein compare
Pf1N1B4_4531 -1.5 -2.8 FIG01221261: hypothetical protein compare
Pf1N1B4_683 -1.5 -3.9 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_4544 -1.5 -2.2 Uncharacterized protein ImpA compare
Pf1N1B4_2105 -1.4 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1492 -1.4 -1.9 FIG00959437: hypothetical protein compare
Pf1N1B4_1871 -1.4 -5.9 Zinc uptake regulation protein ZUR compare
Pf1N1B4_3833 -1.4 -6.7 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_327 -1.3 -1.8 hypothetical protein compare
Pf1N1B4_652 -1.3 -7.8 Sensory box histidine kinase compare
Pf1N1B4_1057 -1.3 -2.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2807 -1.3 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_1812 -1.2 -3.0 Iron siderophore sensor protein compare
Pf1N1B4_175 -1.2 -1.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2209 -1.2 -6.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1159 -1.2 -2.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_2949 -1.2 -1.8 FIG00956396: hypothetical protein compare
Pf1N1B4_1568 -1.1 -3.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_4587 -1.1 -2.1 probable dioxygenase compare
Pf1N1B4_644 -1.1 -2.0 Cold shock protein CspC compare
Pf1N1B4_3447 -1.1 -4.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_4181 -1.1 -2.4 FIG00957123: hypothetical protein compare
Pf1N1B4_1565 -1.1 -3.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_576 -1.1 -3.6 hypothetical protein compare
Pf1N1B4_4636 -1.1 -2.1 TPR domain protein in aerotolerance operon compare
Pf1N1B4_2071 -1.1 -1.8 Protein phosphatase ImpM compare
Pf1N1B4_2039 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_1307 -1.1 -2.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5884 -1.1 -2.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_2912 -1.0 -1.9 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_5330 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_68 -1.0 -2.4 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_3595 -1.0 -1.9 Flagellin protein FlaG compare
Pf1N1B4_2384 -1.0 -6.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1403 -0.9 -4.9 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2412 -0.9 -2.2 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_4166 -0.9 -2.1 Transcriptional regulator, LysR family compare
Pf1N1B4_5912 -0.9 -3.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4870 -0.9 -1.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_2791 -0.9 -1.9 Putative inner membrane protein (Fragment) compare
Pf1N1B4_4644 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_3525 -0.9 -1.8 hydrolase, alpha/beta fold family compare
Pf1N1B4_29 -0.9 -1.9 FIG00967200: hypothetical protein compare
Pf1N1B4_1462 -0.9 -6.7 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3109 -0.9 -3.7 S-formylglutathione hydrolase (EC 3.1.2.12) compare
Pf1N1B4_1282 -0.9 -2.5 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5860 -0.9 -1.7 Two-component response regulator compare
Pf1N1B4_3222 -0.9 -1.5 Ferredoxin compare
Pf1N1B4_1906 -0.9 -2.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3985 -0.9 -1.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_1234 -0.9 -2.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_5989 -0.9 -2.1 FIG067310: hypothetical protein compare
Pf1N1B4_544 -0.9 -2.2 Small-conductance mechanosensitive channel compare
Pf1N1B4_1235 -0.9 -3.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2823 -0.9 -1.4 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_3499 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4150 -0.9 -3.1 Transcriptional regulator, AraC family compare
Pf1N1B4_1626 -0.8 -4.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1008 -0.8 -1.2 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_4861 -0.8 -3.0 KaiC compare
Pf1N1B4_3364 -0.8 -1.8 Cyn operon transcriptional activator compare
Pf1N1B4_3869 -0.8 -6.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_2252 -0.8 -2.1 Organosulfonate utilization protein SsuF compare
Pf1N1B4_5699 -0.8 -1.3 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_3785 -0.8 -1.6 FOG: Ankyrin repeat compare
Pf1N1B4_5880 -0.8 -1.9 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_3549 -0.8 -1.7 YciL protein compare
Pf1N1B4_69 -0.8 -1.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4335 -0.8 -1.7 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_126 -0.8 -1.9 Pirin compare
Pf1N1B4_5051 -0.8 -2.0 Sensor protein DegS compare
Pf1N1B4_1874 -0.8 -1.7 FIG00953549: hypothetical protein compare
Pf1N1B4_5284 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_2283 -0.8 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_5402 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_4569 -0.8 -1.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_5583 -0.8 -2.1 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf1N1B4_606 -0.8 -1.9 Iron siderophore sensor protein compare
Pf1N1B4_2465 -0.8 -1.7 Two-component response regulator CreB compare
Pf1N1B4_3836 -0.8 -1.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_1472 -0.8 -1.5 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_1683 -0.8 -1.3 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_2035 -0.8 -3.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_4511 -0.8 -2.4 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) compare
Pf1N1B4_5112 -0.8 -1.4 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_4051 -0.8 -2.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_962 -0.8 -4.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_2224 -0.8 -1.5 FIG00953390: hypothetical protein compare
Pf1N1B4_2763 -0.8 -2.3 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) compare
Pf1N1B4_2885 -0.8 -3.3 Paraquat-inducible protein A compare
Pf1N1B4_345 -0.8 -1.4 Integration host factor beta subunit compare
Pf1N1B4_1619 -0.8 -4.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_3275 -0.8 -2.7 L-lysine permease compare
Pf1N1B4_1248 -0.8 -2.4 Probable short-chain dehydrogenase compare
Pf1N1B4_4761 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_479 -0.7 -1.9 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_5383 -0.7 -5.2 hypothetical protein compare
Pf1N1B4_1835 -0.7 -3.5 hypothetical protein compare
Pf1N1B4_1624 -0.7 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_4627 -0.7 -1.7 FIG00957600: hypothetical protein compare
Pf1N1B4_4533 -0.7 -1.7 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_4154 -0.7 -2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_4839 -0.7 -1.7 lipoprotein compare
Pf1N1B4_3972 -0.7 -2.2 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_2682 -0.7 -1.4 Antiholin-like protein LrgA compare
Pf1N1B4_4509 -0.7 -1.9 Aldose 1-epimerase compare
Pf1N1B4_4038 -0.7 -1.6 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_4225 -0.7 -2.2 transcriptional regulator, AraC family compare
Pf1N1B4_739 -0.7 -2.6 Endonuclease III (EC 4.2.99.18) compare
Pf1N1B4_5747 -0.7 -1.8 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_4317 -0.7 -1.3 DNA/RNA non-specific endonuclease compare
Pf1N1B4_3011 -0.7 -1.7 Tyrosine recombinase XerD compare
Pf1N1B4_2487 -0.7 -3.9 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_5146 -0.7 -1.6 Chromosome initiation inhibitor compare
Pf1N1B4_4029 -0.7 -1.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3864 -0.7 -2.6 Recombination protein RecR compare
Pf1N1B4_5991 -0.7 -1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_5282 -0.7 -2.0 Phage protein compare
Pf1N1B4_2917 -0.7 -3.9 FIG140336: TPR domain protein compare
Pf1N1B4_1116 -0.7 -5.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_5119 -0.7 -2.3 Putative hemagglutinin/hemolysin-related protein compare
Pf1N1B4_4952 -0.7 -1.6 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_239 -0.7 -2.1 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_5254 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_1892 -0.7 -2.1 ABC transporter ATP-binding protein USSDB6B compare
Pf1N1B4_2421 -0.7 -1.1 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_58 -0.7 -3.0 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4765 -0.7 -1.9 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_4857 -0.7 -2.5 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_259 -0.7 -1.8 Glutathione peroxidase family protein compare
Pf1N1B4_2037 -0.7 -1.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_2004 -0.7 -1.4 putative membrane protein compare
Pf1N1B4_3531 -0.7 -1.5 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_567 -0.7 -1.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_1317 -0.7 -1.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_3468 -0.7 -1.4 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_3870 -0.7 -5.6 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_3762 -0.7 -2.9 FIG137887: membrane protein related to purine degradation compare
Pf1N1B4_3802 -0.7 -1.4 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_4136 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_3871 -0.7 -5.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_5346 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_1544 -0.7 -3.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_4741 -0.7 -2.1 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf1N1B4_649 -0.7 -2.2 Small-conductance mechanosensitive channel compare
Pf1N1B4_4549 -0.7 -1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_4035 -0.6 -1.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3605 -0.6 -1.3 Flagellar motor switch protein FliG compare
Pf1N1B4_4362 -0.6 -2.5 hypothetical protein compare
Pf1N1B4_2886 -0.6 -4.6 Paraquat-inducible protein B compare
Pf1N1B4_2368 -0.6 -2.0 Malonate transporter, MadL subunit compare
Pf1N1B4_4299 -0.6 -1.7 sensor histidine kinase compare
Pf1N1B4_1837 -0.6 -1.0 Osmotically inducible protein C compare
Pf1N1B4_1511 -0.6 -1.3 FIG027190: Putative transmembrane protein compare
Pf1N1B4_4394 -0.6 -1.9 FIG00955080: hypothetical protein compare
Pf1N1B4_1153 -0.6 -1.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_3892 -0.6 -2.6 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
Pf1N1B4_302 -0.6 -2.1 Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD compare
Pf1N1B4_2228 -0.6 -2.2 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_5085 -0.6 -2.7 Capsular polysaccharide synthesis enzyme CpsA, sugar transferase compare
Pf1N1B4_4455 -0.6 -1.5 FIG00953528: hypothetical protein compare
Pf1N1B4_3446 -0.6 -1.2 Putative GTPases (G3E family) compare
Pf1N1B4_1507 -0.6 -2.2 FIG143263: Glycosyl transferase compare
Pf1N1B4_298 -0.6 -1.6 Transcription elongation factor GreB compare
Pf1N1B4_5435 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_3961 -0.6 -1.5 transcriptional regulator, MerR family compare
Pf1N1B4_3390 -0.6 -1.6 RNA polymerase sigma factor RpoE compare
Pf1N1B4_4135 -0.6 -2.6 hypothetical protein compare
Pf1N1B4_1566 -0.6 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_4979 -0.6 -1.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_1366 -0.6 -1.3 FMN-dependent NADH-azoreductase compare
Pf1N1B4_616 -0.6 -1.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2085 -0.6 -1.3 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_2568 -0.6 -1.5 Translation elongation factor Tu compare
Pf1N1B4_4733 -0.6 -1.5 Fap system putative outer membrane protein compare
Pf1N1B4_1481 -0.6 -2.4 Protein involved in catabolism of external DNA compare
Pf1N1B4_4960 -0.6 -1.5 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_4949 -0.6 -1.9 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_2609 -0.6 -4.6 Catalase (EC 1.11.1.6) compare
Pf1N1B4_2484 -0.6 -1.1 hypothetical protein compare
Pf1N1B4_5645 -0.6 -1.8 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_2940 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_491 -0.6 -2.1 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf1N1B4_5453 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_762 -0.6 -2.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2214 -0.6 -1.7 Transcriptional regulator, GntR family compare
Pf1N1B4_3631 -0.6 -2.1 Flagellar motor rotation protein MotA compare
Pf1N1B4_1389 -0.6 -1.5 Lysine decarboxylase family compare
Pf1N1B4_102 -0.6 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_3872 -0.6 -3.9 Putative analog of CcoH, COG3198 compare
Pf1N1B4_4245 -0.6 -2.6 glutamine synthetase family protein compare
Pf1N1B4_3647 -0.6 -4.2 Cytochrome c heme lyase subunit CcmH compare


Specific Phenotypes

For 2 genes in this experiment

For stress 5-Hydroxymethylfurfural in Pseudomonas fluorescens FW300-N1B4

For stress 5-Hydroxymethylfurfural across organisms