Experiment set3IT024 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with 5-Hydroxymethylfurfural 2.5 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_1461 +3.0 10.8 Protein fixF compare
Pf1N1B4_3264 +3.0 9.5 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1463 +2.8 18.6 hypothetical protein compare
Pf1N1B4_1464 +2.7 17.2 Glycosyl transferase compare
Pf1N1B4_3248 +1.8 6.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf1N1B4_5924 +1.7 13.4 hypothetical protein compare
Pf1N1B4_2381 +1.5 12.2 Protein yceI precursor compare
Pf1N1B4_2380 +1.5 12.8 Cytochrome B561 compare
Pf1N1B4_5745 +1.5 4.1 FIG139928: Putative protease compare
Pf1N1B4_5926 +1.4 11.4 hypothetical protein compare
Pf1N1B4_4473 +1.4 3.2 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_4103 +1.2 2.5 Flagellar synthesis regulator FleN compare
Pf1N1B4_5925 +1.2 9.2 hypothetical protein compare
Pf1N1B4_5949 +1.2 2.7 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_733 +1.2 2.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5115 +1.1 3.6 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_1246 +1.1 2.5 FIG00954047: hypothetical protein compare
Pf1N1B4_2352 +1.0 6.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1003 +1.0 2.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4403 +1.0 2.5 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_476 +1.0 3.8 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_3656 +1.0 2.3 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_799 +1.0 1.3 hypothetical protein compare
Pf1N1B4_5152 +0.9 3.0 hypothetical protein compare
Pf1N1B4_5927 +0.9 8.5 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_4422 +0.9 2.3 ABC transporter amino acid-binding protein compare
Pf1N1B4_2679 +0.9 3.8 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_4594 +0.9 2.2 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_5512 +0.9 1.6 hypothetical protein compare
Pf1N1B4_1194 +0.9 2.5 hypothetical protein compare
Pf1N1B4_3368 +0.9 1.9 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_3750 +0.9 2.8 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_3975 +0.9 2.7 Transcriptional regulator, IclR family compare
Pf1N1B4_5275 +0.9 1.9 hypothetical protein compare
Pf1N1B4_4801 +0.9 3.1 Polysaccharide deacetylase compare
Pf1N1B4_4648 +0.9 2.2 transcriptional regulator, MerR family compare
Pf1N1B4_92 +0.9 3.2 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_4220 +0.9 2.1 Maebl compare
Pf1N1B4_5151 +0.9 2.6 FIG002283: Isochorismatase family protein compare
Pf1N1B4_4372 +0.8 2.4 Galactitol utilization operon repressor compare
Pf1N1B4_3501 +0.8 4.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_740 +0.8 2.2 Leucyl-tRNA synthetase compare
Pf1N1B4_2270 +0.8 3.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_885 +0.8 3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3751 +0.8 1.2 FIG00953060: hypothetical protein compare
Pf1N1B4_2713 +0.8 2.2 FIG00955339: hypothetical protein compare
Pf1N1B4_475 +0.8 4.2 ABC-type multidrug transport system, permease component compare
Pf1N1B4_5948 +0.8 3.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf1N1B4_3481 +0.8 3.2 Dienelactone hydrolase family compare
Pf1N1B4_407 +0.8 1.6 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_5824 +0.8 2.8 Na(+) H(+) antiporter subunit D compare
Pf1N1B4_3169 +0.8 2.9 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf1N1B4_602 +0.8 2.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_623 +0.8 1.5 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_2193 +0.8 2.4 hypothetical protein compare
Pf1N1B4_899 +0.8 1.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_690 +0.8 4.9 Transcriptional regulator, AraC family compare
Pf1N1B4_4974 +0.7 2.0 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_81 +0.7 1.9 Putative sulfate permease compare
Pf1N1B4_3485 +0.7 1.5 hypothetical protein compare
Pf1N1B4_4863 +0.7 3.4 Outer membrane protein OprN compare
Pf1N1B4_1336 +0.7 1.8 Putative multicopper oxidases compare
Pf1N1B4_4650 +0.7 3.2 Aspartate racemase (EC 5.1.1.13) compare
Pf1N1B4_4880 +0.7 1.8 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Pf1N1B4_5014 +0.7 1.6 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_4336 +0.7 1.5 FMN-dependent NADH-azoreductase compare
Pf1N1B4_2983 +0.7 2.0 hypothetical protein compare
Pf1N1B4_74 +0.7 1.6 hypothetical protein compare
Pf1N1B4_1181 +0.7 1.9 UPF0125 protein yfjF compare
Pf1N1B4_2048 +0.7 1.6 hypothetical protein compare
Pf1N1B4_3006 +0.7 3.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_761 +0.7 2.0 FIG00954879: hypothetical protein compare
Pf1N1B4_3900 +0.7 2.1 Universal stress protein family COG0589 compare
Pf1N1B4_4301 +0.7 1.8 hypothetical protein compare
Pf1N1B4_3378 +0.7 2.8 Tricarboxylate transport protein TctB compare
Pf1N1B4_4893 +0.7 2.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf1N1B4_1782 +0.7 1.3 hypothetical protein compare
Pf1N1B4_5507 +0.7 1.0 hypothetical protein compare
Pf1N1B4_2163 +0.7 1.3 hypothetical protein compare
Pf1N1B4_4156 +0.6 1.6 putative secreted protein compare
Pf1N1B4_1406 +0.6 3.2 Methyl-accepting chemotaxis protein compare
Pf1N1B4_1571 +0.6 2.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_817 +0.6 2.1 FIG00955104: hypothetical protein compare
Pf1N1B4_1263 +0.6 1.9 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_107 +0.6 2.6 FIG00857858: hypothetical protein compare
Pf1N1B4_3064 +0.6 2.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1466 +0.6 2.8 hypothetical protein compare
Pf1N1B4_4553 +0.6 1.7 FIG00959354: hypothetical protein compare
Pf1N1B4_615 +0.6 1.4 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_2635 +0.6 1.5 hypothetical protein compare
Pf1N1B4_501 +0.6 1.3 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_4865 +0.6 3.6 Multidrug efflux membrane fusion protein MexE compare
Pf1N1B4_5335 +0.6 3.2 YebG, DNA damage-inducible gene in SOS regulon, expressed in stationary phase compare
Pf1N1B4_3111 +0.6 1.2 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_34 +0.6 1.2 Xanthine permease compare
Pf1N1B4_2510 +0.6 2.4 hypothetical protein compare
Pf1N1B4_4715 +0.6 1.0 Transcriptional regulator compare
Pf1N1B4_4200 +0.6 2.4 PhaK-like protein compare
Pf1N1B4_2382 +0.6 4.6 ATP-dependent RNA helicase RhlE compare
Pf1N1B4_448 +0.6 1.4 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_4851 +0.6 1.3 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_5425 +0.6 1.1 DNA-binding protein HU-beta compare
Pf1N1B4_5899 +0.6 1.4 FIG00954746: hypothetical protein compare
Pf1N1B4_4177 +0.6 1.4 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_5619 +0.6 2.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_4932 +0.6 1.9 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_5975 +0.6 1.3 2-methylaconitate racemase compare
Pf1N1B4_5584 +0.6 1.7 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_967 +0.6 1.5 hypothetical protein compare
Pf1N1B4_5568 +0.6 1.1 hypothetical protein compare
Pf1N1B4_4488 +0.6 2.5 Sensory box histidine kinase/response regulator compare
Pf1N1B4_5560 +0.6 1.5 hypothetical protein compare
Pf1N1B4_5527 +0.6 2.0 hypothetical protein compare
Pf1N1B4_4882 +0.6 2.6 Transcriptional regulator MexT compare
Pf1N1B4_2343 +0.6 2.7 Twitching motility protein PilT compare
Pf1N1B4_5093 +0.6 1.9 Endo-beta-1,3-glucanase compare
Pf1N1B4_4000 +0.6 2.4 Outer membrane component of tripartite multidrug resistance system compare
Pf1N1B4_1485 +0.6 1.7 FIG00963848: hypothetical protein compare
Pf1N1B4_5710 +0.6 2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_5678 +0.6 2.3 sensory box histidine kinase/response regulator compare
Pf1N1B4_4568 +0.6 1.2 FIG00793915: hypothetical protein compare
Pf1N1B4_3484 +0.6 2.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_1465 +0.6 4.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_2833 +0.6 1.7 Benzoate transport protein compare
Pf1N1B4_3005 +0.6 4.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf1N1B4_5801 +0.6 1.8 hypothetical protein compare
Pf1N1B4_3772 +0.6 1.9 Glutaredoxin compare
Pf1N1B4_5644 +0.5 2.0 amino acid ABC transporter, permease protein compare
Pf1N1B4_1365 +0.5 2.1 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_3515 +0.5 1.9 FIG00953467: hypothetical protein compare
Pf1N1B4_5334 +0.5 1.8 hypothetical protein compare
Pf1N1B4_5740 +0.5 2.2 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf1N1B4_650 +0.5 2.1 FIG001943: hypothetical protein YajQ compare
Pf1N1B4_5866 +0.5 1.9 ThiJ/PfpI family protein compare
Pf1N1B4_5055 +0.5 1.5 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_1353 +0.5 2.2 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_5751 +0.5 2.5 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_3405 +0.5 2.1 Signal transduction histidine kinase compare
Pf1N1B4_1212 +0.5 2.0 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_1457 +0.5 3.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_5431 +0.5 3.0 hypothetical protein compare
Pf1N1B4_5252 +0.5 2.7 hypothetical protein compare
Pf1N1B4_4485 +0.5 1.3 membrane protein, putative compare
Pf1N1B4_4866 +0.5 1.3 hypothetical protein compare
Pf1N1B4_715 +0.5 2.5 Iron-regulated protein A precursor compare
Pf1N1B4_5916 +0.5 1.5 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_751 +0.5 1.1 hypothetical protein compare
Pf1N1B4_5288 +0.5 1.7 hypothetical protein compare
Pf1N1B4_1888 +0.5 2.0 Glutamate-aspartate carrier protein compare
Pf1N1B4_430 +0.5 1.4 hypothetical protein compare
Pf1N1B4_4560 +0.5 0.8 Transcriptional regulator, MerR family compare
Pf1N1B4_5658 +0.5 1.9 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf1N1B4_2793 +0.5 1.6 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf1N1B4_4920 +0.5 1.8 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_1629 +0.5 2.0 FIG00958480: hypothetical protein compare
Pf1N1B4_3588 +0.5 1.3 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_2731 +0.5 1.5 Uncharacterized protein conserved in bacteria compare
Pf1N1B4_4472 +0.5 1.4 Transcriptional regulator, ArsR family compare
Pf1N1B4_572 +0.5 3.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_5239 +0.5 1.6 hypothetical protein compare
Pf1N1B4_183 +0.5 1.6 Major facilitator family transporter compare
Pf1N1B4_5302 +0.5 1.3 hypothetical protein compare
Pf1N1B4_188 +0.5 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2206 +0.5 2.9 FIG139438: lipoprotein B compare
Pf1N1B4_242 +0.5 1.9 Glutathione-regulated potassium-efflux system protein KefB compare
Pf1N1B4_4337 +0.5 1.1 Transcriptional regulator compare
Pf1N1B4_2178 +0.5 1.2 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_538 +0.5 1.2 hypothetical protein compare
Pf1N1B4_3954 +0.5 2.4 Hydrolase, carbon-nitrogen family compare
Pf1N1B4_4542 +0.5 1.8 IcmF-related protein compare
Pf1N1B4_4803 +0.5 1.7 ABC-type polar amino acid transport system protein, substrate-binding protein compare
Pf1N1B4_3509 +0.5 2.3 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) compare
Pf1N1B4_882 +0.5 1.6 carbonic anhydrase, family 3 compare
Pf1N1B4_343 +0.5 2.0 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_4867 +0.5 1.5 FIG00464907: hypothetical protein compare
Pf1N1B4_1480 +0.5 1.7 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) compare
Pf1N1B4_4063 +0.5 1.4 CrcB protein compare
Pf1N1B4_1276 +0.5 1.3 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_3469 +0.5 2.4 Flagellar basal-body P-ring formation protein FlgA compare
Pf1N1B4_3556 +0.5 3.1 Leucyl aminopeptidase (aminopeptidase T) compare
Pf1N1B4_516 +0.5 1.3 Sensor histidine kinase compare
Pf1N1B4_4297 +0.5 1.3 FIG00966599: hypothetical protein compare
Pf1N1B4_2010 +0.5 2.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_80 +0.5 2.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_373 +0.5 1.4 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_4108 +0.5 1.1 Hydrolase, alpha/beta fold family compare
Pf1N1B4_3506 +0.5 2.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_304 +0.4 1.1 Deoxyribonuclease TatD compare
Pf1N1B4_5595 +0.4 2.4 Phenylacetic acid-specific porin; hydroxycinnamate specific porine compare
Pf1N1B4_3206 +0.4 1.5 Short chain dehydrogenase compare
Pf1N1B4_1252 +0.4 1.8 Adenosine deaminase (EC 3.5.4.4) compare
Pf1N1B4_5604 +0.4 1.3 Permeases of the major facilitator superfamily compare
Pf1N1B4_778 +0.4 2.4 hypothetical protein compare
Pf1N1B4_5759 +0.4 1.2 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_1127 +0.4 2.5 Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) compare
Pf1N1B4_3001 +0.4 1.5 hypothetical protein compare
Pf1N1B4_901 +0.4 1.0 hypothetical protein compare
Pf1N1B4_2353 +0.4 1.6 twitching motility protein PilG compare
Pf1N1B4_5105 +0.4 1.2 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_165 +0.4 1.0 FIG00638667: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress 5-Hydroxymethylfurfural in Pseudomonas fluorescens FW300-N1B4

For stress 5-Hydroxymethylfurfural across organisms