Experiment set3IT024 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07845 -9.2 -3.3 LL-diaminopimelate aminotransferase compare
MMP_RS01175 -8.7 -4.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08105 -8.4 -5.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS06355 -8.3 -3.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06370 -7.9 -3.9 biotin synthase BioB compare
MMP_RS04500 -7.7 -11.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS02195 -7.2 -3.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01980 -7.0 -13.9 trimeric intracellular cation channel family protein compare
MMP_RS07195 -6.9 -9.1 M20 family metallo-hydrolase compare
MMP_RS07750 -6.8 -5.5 DUF357 domain-containing protein compare
MMP_RS06120 -6.7 -2.7 UPF0147 family protein compare
MMP_RS00895 -6.6 -4.5 hypothetical protein compare
MMP_RS06285 -6.6 -2.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08820 -6.5 -6.2 hypothetical protein compare
MMP_RS06895 -6.5 -2.3 selenocysteine-specific translation elongation factor compare
MMP_RS09020 -6.4 -2.3 hypothetical protein compare
MMP_RS08790 -6.3 -2.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS04685 -6.2 -3.4 DUF126 domain-containing protein compare
MMP_RS04720 -6.2 -3.1 DedA family protein compare
MMP_RS00685 -6.2 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS03025 -6.1 -6.0 molybdenum cofactor guanylyltransferase compare
MMP_RS02190 -6.1 -3.3 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS07635 -6.1 -8.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS08095 -6.0 -7.3 dethiobiotin synthase compare
MMP_RS03700 -6.0 -9.2 sodium:proton antiporter compare
MMP_RS03435 -6.0 -2.4 ketol-acid reductoisomerase compare
MMP_RS03445 -5.9 -1.2 methanogenesis marker 17 protein compare
MMP_RS06400 -5.9 -2.1 4Fe-4S binding protein compare
MMP_RS08715 -5.9 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01910 -5.8 -4.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03015 -5.8 -11.0 GTP 3' 8-cyclase MoaA compare
MMP_RS03600 -5.8 -2.7 triose-phosphate isomerase compare
MMP_RS07380 -5.8 -2.6 transcription elongation factor Spt5 compare
MMP_RS01020 -5.8 -1.2 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06730 -5.7 -2.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS08100 -5.7 -5.8 8-amino-7-oxononanoate synthase compare
MMP_RS05515 -5.7 -6.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06625 -5.6 -3.1 DNA primase compare
MMP_RS06475 -5.6 -5.3 FAD-dependent oxidoreductase compare
MMP_RS01220 -5.5 -8.7 hypothetical protein compare
MMP_RS05845 -5.5 -2.2 tRNA-intron lyase compare
MMP_RS01915 -5.5 -10.5 DUF354 domain-containing protein compare
MMP_RS00110 -5.4 -3.5 hypothetical protein compare
MMP_RS00305 -5.4 -2.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS05930 -5.3 -3.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS08745 -5.2 -6.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06230 -5.1 -2.8 helix-turn-helix domain-containing protein compare
MMP_RS01800 -5.1 -5.4 TIGR00303 family protein compare
MMP_RS06930 -5.1 -12.0 MBL fold metallo-hydrolase compare
MMP_RS01005 -5.1 -1.5 riboflavin synthase compare
MMP_RS03315 -5.1 -1.8 ferrous iron transport protein A compare
MMP_RS07645 -5.0 -5.4 aldehyde dehydrogenase family protein compare
MMP_RS03580 -5.0 -4.0 signal recognition particle-docking protein FtsY compare
MMP_RS01225 -5.0 -5.6 DUF5379 domain-containing protein compare
MMP_RS03035 -5.0 -4.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01920 -5.0 -15.3 glycosyltransferase family 2 protein compare
MMP_RS00300 -5.0 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01880 -5.0 -7.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01725 -4.9 -4.8 class I SAM-dependent methyltransferase family protein compare
MMP_RS03400 -4.9 -3.1 archease compare
MMP_RS02345 -4.9 -4.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS02135 -4.8 -5.4 DUF5612 domain-containing protein compare
MMP_RS07730 -4.8 -2.2 pyruvate synthase subunit beta compare
MMP_RS01905 -4.8 -6.6 glycosyltransferase compare
MMP_RS06670 -4.8 -5.7 glucose-6-phosphate isomerase compare
MMP_RS01875 -4.8 -10.2 N-acetyltransferase compare
MMP_RS02340 -4.8 -2.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS07755 -4.7 -1.4 DUF555 domain-containing protein compare
MMP_RS01970 -4.7 -13.2 TIGR04279 domain-containing protein compare
MMP_RS01745 -4.7 -6.0 AMP phosphorylase compare
MMP_RS04780 -4.7 -2.7 ribonuclease P compare
MMP_RS04775 -4.7 -3.9 adenosylhomocysteinase compare
MMP_RS07540 -4.7 -4.1 CBS domain-containing protein compare
MMP_RS00520 -4.6 -2.2 RNA polymerase Rpb4 family protein compare
MMP_RS01325 -4.6 -2.5 dihydroneopterin aldolase family protein compare
MMP_RS04710 -4.6 -2.0 hypothetical protein compare
MMP_RS06295 -4.6 -8.6 methanogenesis marker 14 protein compare
MMP_RS08440 -4.6 -4.1 cell division protein SepF compare
MMP_RS07600 -4.6 -2.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00325 -4.5 -1.8 RNA-binding protein compare
MMP_RS01885 -4.5 -7.6 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01385 -4.5 -0.9 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08720 -4.5 -1.8 4Fe-4S binding protein compare
MMP_RS05920 -4.5 -0.9 50S ribosomal protein L37e compare
MMP_RS06020 -4.5 -5.1 archaeoflavoprotein AfpA compare
MMP_RS07555 -4.5 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS08460 -4.4 -2.9 proteasome-activating nucleotidase compare
MMP_RS08635 -4.4 -2.2 UbiA family prenyltransferase compare
MMP_RS07005 -4.4 -0.9 4Fe-4S binding protein compare
MMP_RS08300 -4.4 -1.6 metal-sulfur cluster assembly factor compare
MMP_RS00040 -4.4 -4.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06350 -4.4 -6.8 HesA/MoeB/ThiF family protein compare
MMP_RS06270 -4.4 -6.5 TIGR00300 family protein compare
MMP_RS07390 -4.4 -3.4 cell division protein FtsZ compare
MMP_RS01830 -4.3 -1.8 tRNA-Val compare
MMP_RS03640 -4.3 -3.9 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06975 -4.3 -2.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS00515 -4.3 -1.2 DUF655 domain-containing protein compare
MMP_RS03960 -4.2 -1.2 hypothetical protein compare
MMP_RS01940 -4.2 -5.4 MoxR family ATPase compare
MMP_RS06885 -4.1 -3.5 50S ribosome-binding GTPase compare
MMP_RS02240 -4.1 -4.0 methanogenesis marker 7 protein compare
MMP_RS05640 -4.1 -6.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08210 -4.1 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS05265 -4.1 -2.7 2-isopropylmalate synthase compare
MMP_RS08650 -4.0 -4.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07200 -4.0 -7.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01755 -3.9 -1.6 DUF2097 domain-containing protein compare
MMP_RS01700 -3.9 -1.1 dihydroxy-acid dehydratase compare
MMP_RS02290 -3.9 -10.7 MBL fold metallo-hydrolase compare
MMP_RS01925 -3.9 -8.6 DUF1616 domain-containing protein compare
MMP_RS00050 -3.8 -7.3 AarF/UbiB family protein compare
MMP_RS05250 -3.8 -2.7 NFYB/HAP3 family transcription factor subunit compare
MMP_RS06900 -3.8 -3.2 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00115 -3.8 -14.2 radical SAM protein compare
MMP_RS01900 -3.7 -20.0 hypothetical protein compare
MMP_RS05425 -3.7 -4.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS00695 -3.7 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01380 -3.7 -4.8 PHP domain-containing protein compare
MMP_RS01895 -3.7 -9.3 flippase compare
MMP_RS04900 -3.6 -23.5 hypothetical protein compare
MMP_RS07545 -3.6 -1.0 HTH domain-containing protein compare
MMP_RS05815 -3.6 -3.2 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS01610 -3.5 -3.7 hypothetical protein compare
MMP_RS08435 -3.5 -2.7 Era-like GTP-binding protein compare
MMP_RS01795 -3.5 -2.0 methanogenesis marker 6 protein compare
MMP_RS06925 -3.5 -2.9 ribonuclease VapC4 compare
MMP_RS02145 -3.5 -3.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS05345 -3.5 -8.8 hypothetical protein compare
MMP_RS01955 -3.4 -2.6 hypothetical protein compare
MMP_RS06340 -3.4 -7.1 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06630 -3.4 -1.4 UPF0058 family protein compare
MMP_RS04890 -3.4 -1.0 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05525 -3.4 -7.2 calcium/sodium antiporter compare
MMP_RS02280 -3.3 -1.0 DUF211 domain-containing protein compare
MMP_RS01545 -3.3 -1.4 CBS domain-containing protein compare
MMP_RS06315 -3.1 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS02010 -3.1 -5.9 PHP domain-containing protein compare
MMP_RS06980 -3.0 -7.2 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01890 -3.0 -4.1 nucleotide sugar dehydrogenase compare
MMP_RS07435 -2.9 -2.5 GMP synthase subunit A compare
MMP_RS01365 -2.9 -2.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS02875 -2.9 -9.7 chorismate pyruvate-lyase family protein compare
MMP_RS03475 -2.9 -0.8 hypothetical protein compare
MMP_RS01975 -2.8 -10.9 hypothetical protein compare
MMP_RS06310 -2.8 -2.7 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS03140 -2.8 -12.5 hypothetical protein compare
MMP_RS02355 -2.7 -2.1 30S ribosomal protein S27ae compare
MMP_RS07875 -2.7 -7.7 hypothetical protein compare
MMP_RS02900 -2.7 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05555 -2.6 -1.5 DUF4040 domain-containing protein compare
MMP_RS04605 -2.6 -5.2 cobalt ECF transporter T component CbiQ compare
MMP_RS05695 -2.6 -10.3 phospholipase D-like domain-containing protein compare
MMP_RS06940 -2.6 -4.0 polyprenyl diphosphate synthase compare
MMP_RS08330 -2.6 -3.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS07425 -2.6 -6.8 GTP-binding protein compare
MMP_RS00320 -2.5 -2.4 class I SAM-dependent methyltransferase compare
MMP_RS01945 -2.5 -5.4 DUF4350 domain-containing protein compare
MMP_RS01930 -2.5 -11.3 hypothetical protein compare
MMP_RS04585 -2.5 -10.2 AIR synthase related protein compare
MMP_RS05800 -2.5 -8.3 B12-binding domain-containing radical SAM protein compare
MMP_RS01935 -2.5 -6.7 DUF58 domain-containing protein compare
MMP_RS07580 -2.5 -2.5 DUF356 domain-containing protein compare
MMP_RS00450 -2.4 -2.4 4Fe-4S binding protein compare
MMP_RS06105 -2.4 -10.2 hydrogenase maturation peptidase HycI compare
MMP_RS07605 -2.4 -3.8 diadenylate cyclase compare
MMP_RS02245 -2.4 -4.2 hypothetical protein compare
MMP_RS03145 -2.4 -7.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08365 -2.3 -5.7 energy conserving hydrogenase EhbF compare
MMP_RS08645 -2.3 -7.8 UPF0179 family protein compare
MMP_RS03095 -2.3 -6.6 diphthine synthase compare
MMP_RS00810 -2.3 -6.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08335 -2.3 -7.9 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS08445 -2.3 -3.5 DUF2099 family protein compare
MMP_RS00720 -2.2 -7.6 metal-dependent hydrolase compare
MMP_RS02800 -2.2 -6.2 nucleotidyltransferase domain-containing protein compare
MMP_RS06215 -2.2 -2.6 30S ribosomal protein S6e compare
MMP_RS07075 -2.2 -3.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS01960 -2.1 -0.6 hypothetical protein compare
MMP_RS04485 -2.1 -13.8 putative beta-lysine N-acetyltransferase compare
MMP_RS01950 -2.1 -5.7 hypothetical protein compare
MMP_RS08570 -2.1 -8.7 coenzyme F420-0:L-glutamate ligase compare
MMP_RS04955 -2.1 -4.5 DNA topoisomerase I compare
MMP_RS07735 -2.1 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08595 -2.1 -1.3 flagellar protein C compare
MMP_RS01500 -2.0 -1.9 CBS domain-containing protein compare
MMP_RS07420 -2.0 -3.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03155 -2.0 -6.4 precorrin-6A reductase compare
MMP_RS01415 -2.0 -2.8 DUF2067 domain-containing protein compare
MMP_RS00130 -2.0 -1.2 nickel-responsive transcriptional regulator NikR compare
MMP_RS03205 -2.0 -1.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00735 -1.9 -3.0 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS04615 -1.9 -3.6 PDGLE domain-containing protein compare
MMP_RS01665 -1.9 -2.5 DUF2111 domain-containing protein compare
MMP_RS08225 -1.9 -8.2 RimK family alpha-L-glutamate ligase compare
MMP_RS05440 -1.9 -7.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS08360 -1.9 -4.2 hypothetical protein compare
MMP_RS06395 -1.8 -3.8 ThiF family adenylyltransferase compare
MMP_RS05245 -1.8 -6.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS06770 -1.8 -5.6 DHH family phosphoesterase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms