Experiment set3IT024 for Cupriavidus basilensis FW507-4G11

Compare to:

Glucuronamide nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS14365 -6.2 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS19005 -5.6 -5.5 3-dehydroquinate synthase compare
RR42_RS33255 -5.3 -3.2 protein-tyrosine phosphatase compare
RR42_RS14320 -5.2 -5.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS14390 -5.0 -4.8 3-isopropylmalate dehydratase compare
RR42_RS06485 -4.9 -8.8 chorismate synthase compare
RR42_RS14400 -4.4 -5.9 isopropylmalate isomerase compare
RR42_RS05860 -4.3 -6.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16255 -4.2 -7.4 sulfate adenylyltransferase compare
RR42_RS33260 -4.0 -9.7 multidrug MFS transporter compare
RR42_RS04475 -3.9 -11.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS15905 -3.9 -10.4 phosphoenolpyruvate carboxylase compare
RR42_RS33250 -3.8 -8.4 tyrosine protein kinase compare
RR42_RS11655 -3.6 -1.9 heat-shock protein Hsp20 compare
RR42_RS16250 -3.6 -5.9 sulfate adenylyltransferase compare
RR42_RS01845 -3.6 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS14385 -3.5 -6.7 3-isopropylmalate dehydrogenase compare
RR42_RS30655 -3.4 -6.5 LysR family transcriptional regulator compare
RR42_RS18295 -3.4 -10.3 anthranilate synthase component I compare
RR42_RS15415 -3.3 -3.7 membrane protein compare
RR42_RS18305 -3.2 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS12980 -3.2 -6.7 chemotaxis protein CheY compare
RR42_RS33240 -3.2 -15.3 GDP-L-fucose synthase compare
RR42_RS12015 -3.1 -3.2 dihydrolipoamide acyltransferase compare
RR42_RS18990 -3.1 -15.1 glutamate synthase compare
RR42_RS33245 -3.1 -8.9 mannose-1-phosphate guanyltransferase compare
RR42_RS01160 -3.1 -7.8 homoserine O-acetyltransferase compare
RR42_RS02705 -3.0 -2.7 Holliday junction DNA helicase RuvA compare
RR42_RS14360 -3.0 -1.5 tryptophan synthase subunit alpha compare
RR42_RS16245 -3.0 -5.6 uroporphyrin-III methyltransferase compare
RR42_RS11790 -3.0 -10.4 phosphoenolpyruvate synthase compare
RR42_RS14055 -3.0 -3.1 elongation factor 4 compare
RR42_RS16265 -2.8 -3.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18300 -2.8 -6.0 anthranilate synthase subunit II compare
RR42_RS01385 -2.8 -4.2 5,10-methylenetetrahydrofolate reductase compare
RR42_RS02500 -2.8 -2.4 TetR family transcriptional regulator compare
RR42_RS04145 -2.8 -1.5 peptidase A24 compare
RR42_RS04460 -2.7 -6.7 chorismate mutase compare
RR42_RS33210 -2.7 -8.0 teichoic acid biosynthesis protein compare
RR42_RS07605 -2.6 -5.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS16270 -2.6 -7.8 sulfite reductase compare
RR42_RS19010 -2.6 -6.5 shikimate kinase compare
RR42_RS18985 -2.6 -6.0 glutamate synthase compare
RR42_RS15890 -2.6 -5.5 heme biosynthesis protein HemY compare
RR42_RS11885 -2.5 -9.8 (protein-PII) uridylyltransferase compare
RR42_RS14790 -2.5 -6.4 cobalamin biosynthesis protein CobD compare
RR42_RS33235 -2.4 -6.9 GDP-mannose 4,6-dehydratase compare
RR42_RS17645 -2.3 -7.7 shikimate dehydrogenase compare
RR42_RS12985 -2.3 -5.7 histidine kinase compare
RR42_RS02085 -2.2 -7.3 RNA polymerase subunit sigma-54 compare
RR42_RS04320 -2.2 -6.1 cell division protein FtsK compare
RR42_RS37045 -2.2 -2.0 thiamine biosynthesis protein ApbE compare
RR42_RS01760 -2.2 -11.1 ammonia channel protein conserved
RR42_RS18855 -2.1 -3.5 preprotein translocase compare
RR42_RS16280 -2.1 -6.2 transcriptional regulator compare
RR42_RS30660 -2.1 -7.7 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS01795 -2.1 -11.0 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS01380 -2.1 -2.3 membrane protein compare
RR42_RS17590 -2.0 -2.3 16S rRNA methyltransferase compare
RR42_RS04770 -2.0 -1.5 methylglyoxal synthase compare
RR42_RS01290 -2.0 -6.1 thiamine biosynthesis protein ThiC compare
RR42_RS09015 -2.0 -2.9 trigger factor compare
RR42_RS07555 -1.9 -2.4 potassium transporter Kup compare
RR42_RS12040 -1.8 -7.7 MFS transporter compare
RR42_RS17105 -1.8 -6.8 Clp protease ClpX compare
RR42_RS11770 -1.8 -2.3 cyclase compare
RR42_RS21295 -1.7 -2.0 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS07130 -1.7 -2.6 hypothetical protein compare
RR42_RS13800 -1.7 -5.8 formyltetrahydrofolate deformylase compare
RR42_RS21300 -1.7 -4.7 GntR family transcriptional regulator compare
RR42_RS19885 -1.7 -1.9 aminoglycoside transporter compare
RR42_RS17390 -1.7 -5.3 ATP-dependent DNA helicase RecG compare
RR42_RS00725 -1.7 -3.9 hypothetical protein compare
RR42_RS15895 -1.6 -5.0 uroporphyrinogen III methyltransferase compare
RR42_RS06630 -1.6 -2.4 integration host factor subunit alpha compare
RR42_RS02045 -1.6 -10.9 GTPase compare
RR42_RS15410 -1.6 -3.0 membrane protein compare
RR42_RS04280 -1.6 -4.8 aldehyde dehydrogenase compare
RR42_RS19750 -1.6 -1.4 MBL fold metallo-hydrolase compare
RR42_RS04470 -1.6 -3.3 prephenate dehydrogenase compare
RR42_RS33195 -1.6 -7.1 UDP-sugar lipid carrier transferase compare
RR42_RS19090 -1.6 -1.0 cytochrome C compare
RR42_RS01775 -1.6 -4.9 glutamate--cysteine ligase compare
RR42_RS01750 -1.5 -9.8 hypothetical protein conserved
RR42_RS35875 -1.5 -6.3 UDP-galactose-4-epimerase compare
RR42_RS04535 -1.5 -4.8 cysteine synthase compare
RR42_RS12050 -1.5 -6.4 DNA polymerase compare
RR42_RS15640 -1.5 -1.4 hypothetical protein compare
RR42_RS02425 -1.5 -3.3 hypothetical protein compare
RR42_RS04895 -1.5 -6.7 serine/threonine protein phosphatase compare
RR42_RS02150 -1.5 -2.2 membrane protein compare
RR42_RS08425 -1.4 -1.6 hypothetical protein compare
RR42_RS01095 -1.4 -1.8 membrane protein compare
RR42_RS17060 -1.4 -8.9 histidine kinase compare
RR42_RS06240 -1.4 -2.0 tryptophan--tRNA ligase compare
RR42_RS31575 -1.4 -2.8 GntR family transcriptional regulator compare
RR42_RS09590 -1.4 -1.4 hypothetical protein compare
RR42_RS33215 -1.4 -7.3 transferase compare
RR42_RS07385 -1.4 -2.3 Phasin (PHA-granule associated protein) compare
RR42_RS16275 -1.4 -2.5 membrane protein compare
RR42_RS19900 -1.4 -1.9 MerR family transcriptional regulator compare
RR42_RS21435 -1.4 -2.5 hypothetical protein compare
RR42_RS21040 -1.4 -1.0 hypothetical protein compare
RR42_RS07615 -1.4 -1.6 3-ketoacyl-ACP reductase compare
RR42_RS08025 -1.4 -1.2 phage Gp37Gp68 compare
RR42_RS36400 -1.4 -1.0 hypothetical protein compare
RR42_RS06250 -1.3 -1.9 dihydrodipicolinate synthase compare
RR42_RS18850 -1.3 -2.0 preprotein translocase subunit TatC compare
RR42_RS02675 -1.3 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
RR42_RS18270 -1.3 -2.0 murein transglycosylase compare
RR42_RS26540 -1.3 -1.2 3-phosphoglycerate dehydrogenase compare
RR42_RS01720 -1.3 -1.8 membrane protein compare
RR42_RS28000 -1.3 -1.7 hypothetical protein compare
RR42_RS21285 -1.3 -5.1 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS08365 -1.3 -4.6 hypothetical protein compare
RR42_RS32850 -1.3 -2.9 universal stress protein UspA compare
RR42_RS19485 -1.3 -1.0 general secretion pathway protein GspH compare
RR42_RS15090 -1.3 -3.1 DNA helicase compare
RR42_RS18995 -1.3 -4.6 transposase compare
RR42_RS00805 -1.3 -2.4 membrane protein compare
RR42_RS21280 -1.3 -5.0 L-lactate permease compare
RR42_RS15050 -1.2 -8.0 DNA polymerase I compare
RR42_RS37330 -1.2 -5.0 1,4-D-glucanase compare
RR42_RS22360 -1.2 -1.5 hypothetical protein compare
RR42_RS05965 -1.2 -1.4 malonic semialdehyde reductase compare
RR42_RS08770 -1.2 -1.2 2-nitropropane dioxygenase compare
RR42_RS01780 -1.2 -4.4 glutathione synthetase compare
RR42_RS13910 -1.2 -3.9 glutamate racemase compare
RR42_RS34610 -1.2 -1.7 hydroxyacid dehydrogenase compare
RR42_RS20350 -1.2 -2.2 hypothetical protein compare
RR42_RS26900 -1.2 -1.3 enoyl-CoA hydratase compare
RR42_RS22230 -1.2 -1.9 hypothetical protein compare
RR42_RS03035 -1.2 -1.1 membrane protein compare
RR42_RS19680 -1.2 -2.0 hypothetical protein compare
RR42_RS21695 -1.2 -3.2 DNA-binding protein compare
RR42_RS13025 -1.2 -2.1 hypothetical protein compare
RR42_RS12550 -1.2 -3.3 hypothetical protein compare
RR42_RS05665 -1.1 -1.0 urease accessory protein UreJ compare
RR42_RS02785 -1.1 -2.7 dimethyladenosine transferase compare
RR42_RS02870 -1.1 -2.7 RNA helicase compare
RR42_RS13195 -1.1 -4.6 protein-L-isoaspartate O-methyltransferase compare
RR42_RS17565 -1.1 -7.5 LysR family transcriptional regulator compare
RR42_RS18140 -1.1 -0.7 MarR family transcriptional regulator compare
RR42_RS15740 -1.1 -2.1 hypothetical protein compare
RR42_RS10845 -1.1 -3.1 cupin compare
RR42_RS16715 -1.1 -3.2 hypothetical protein compare
RR42_RS19555 -1.1 -1.5 hypothetical protein compare
RR42_RS18310 -1.1 -1.0 indole-3-glycerol-phosphate synthase compare
RR42_RS01485 -1.1 -1.4 phosphonate transporter compare
RR42_RS34510 -1.1 -3.5 acetyltransferase compare
RR42_RS24490 -1.1 -1.9 hypothetical protein compare
RR42_RS34815 -1.1 -2.8 diguanylate cyclase compare
RR42_RS15470 -1.1 -1.5 biopolymer transporter ExbD compare
RR42_RS13270 -1.1 -5.1 recombination protein RecR compare
RR42_RS05920 -1.1 -3.3 HrcA family transcriptional regulator compare
RR42_RS17595 -1.1 -1.9 hypothetical protein compare
RR42_RS00610 -1.1 -4.5 hypothetical protein compare
RR42_RS04245 -1.1 -2.4 chemotaxis protein CheY compare
RR42_RS15845 -1.1 -1.5 biotin transporter BioY compare
RR42_RS34585 -1.1 -1.5 LysR family transcriptional regulator compare
RR42_RS32740 -1.1 -0.8 enoyl-CoA hydratase compare
RR42_RS06095 -1.1 -2.8 hypothetical protein compare
RR42_RS20210 -1.1 -2.5 16S rRNA methyltransferase compare
RR42_RS18670 -1.0 -3.6 metal-dependent hydrolase compare
RR42_RS27790 -1.0 -1.2 LuxR family transcriptional regulator compare
RR42_RS16950 -1.0 -3.5 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS03170 -1.0 -3.9 hypothetical protein compare
RR42_RS32600 -1.0 -2.7 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS04180 -1.0 -1.4 methyltransferase compare
RR42_RS18485 -1.0 -0.8 glutaredoxin compare
RR42_RS07565 -1.0 -3.8 transcription accessory protein compare
RR42_RS15970 -1.0 -1.4 lipoprotein compare
RR42_RS00540 -1.0 -5.8 hypothetical protein compare
RR42_RS08330 -1.0 -0.9 hypothetical protein compare
RR42_RS13015 -1.0 -3.0 fatty acid hydroxylase compare
RR42_RS16335 -1.0 -0.8 hypothetical protein compare
RR42_RS24510 -1.0 -1.5 hypothetical protein compare
RR42_RS17620 -1.0 -3.6 phosphatidylglycerophosphatase compare
RR42_RS29780 -1.0 -2.0 hypothetical protein compare
RR42_RS13655 -1.0 -2.6 glyoxalase compare
RR42_RS14075 -1.0 -3.5 anti-sigma factor compare
RR42_RS16930 -1.0 -2.2 sulfonate ABC transporter ATP-binding protein compare
RR42_RS19495 -1.0 -3.7 general secretion pathway protein GspJ compare
RR42_RS20205 -0.9 -1.8 chromosome partitioning protein compare
RR42_RS24605 -0.9 -3.8 TetR family transcriptional regulator compare
RR42_RS36660 -0.9 -2.4 GntR family transcriptional regulator compare
RR42_RS17930 -0.9 -3.6 RNA pyrophosphohydrolase compare
RR42_RS34185 -0.9 -1.9 hypothetical protein compare
RR42_RS07140 -0.9 -0.8 hypothetical protein compare
RR42_RS06930 -0.9 -1.4 hypothetical protein compare
RR42_RS18945 -0.9 -2.6 toluene tolerance protein compare
RR42_RS19410 -0.9 -3.1 GntR family transcriptional regulator compare
RR42_RS14355 -0.9 -3.8 DNA methylase N-4 compare
RR42_RS12240 -0.9 -0.9 hypothetical protein compare
RR42_RS03095 -0.9 -0.9 succinyl-CoA synthetase subunit beta compare
RR42_RS26350 -0.9 -1.5 bleomycin resistance protein compare
RR42_RS32670 -0.9 -0.8 phenol hydroxylase compare
RR42_RS28720 -0.9 -1.8 hypothetical protein compare
RR42_RS28770 -0.9 -3.7 ubiquinone biosynthesis protein compare
RR42_RS16945 -0.9 -3.3 NAD-dependent dehydratase compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Glucuronamide in Cupriavidus basilensis FW507-4G11

For nitrogen source Glucuronamide across organisms