Experiment set3IT024 for Cupriavidus basilensis FW507-4G11

Compare to:

Glucuronamide nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS00600 +1.7 0.7 DeoR family transcriptional regulator compare
RR42_RS21150 +1.4 2.9 hypothetical protein compare
RR42_RS29610 +1.3 2.1 cytochrome C2 compare
RR42_RS08000 +1.3 1.6 hypothetical protein compare
RR42_RS13305 +1.2 1.6 hypothetical protein compare
RR42_RS12130 +1.1 2.2 hypothetical protein compare
RR42_RS31435 +1.1 1.4 hypothetical protein compare
RR42_RS20370 +1.1 1.4 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS24760 +1.0 1.2 hypothetical protein compare
RR42_RS23355 +1.0 1.9 flagellar biosynthetic protein FliQ compare
RR42_RS27885 +1.0 2.2 2-keto-4-pentenoate hydratase compare
RR42_RS18385 +1.0 1.5 hypothetical protein compare
RR42_RS09375 +1.0 1.2 taurine dioxygenase compare
RR42_RS33910 +1.0 2.2 LysR family transcriptional regulator compare
RR42_RS25455 +0.9 1.4 acetyl-CoA acetyltransferase compare
RR42_RS15795 +0.9 3.7 spore coat protein compare
RR42_RS14520 +0.9 1.9 mobilization protein compare
RR42_RS03525 +0.9 1.3 type VI secretion system effector compare
RR42_RS37400 +0.9 1.1 6-phosphogluconolactonase compare
RR42_RS26200 +0.9 1.7 hypothetical protein compare
RR42_RS18980 +0.9 3.6 GCN5 family acetyltransferase compare
RR42_RS06785 +0.9 2.4 hypothetical protein compare
RR42_RS19895 +0.9 1.4 elongation factor GreAB compare
RR42_RS27550 +0.9 1.2 hypothetical protein compare
RR42_RS28695 +0.9 1.5 hypothetical protein compare
RR42_RS18840 +0.9 2.8 2-alkenal reductase compare
RR42_RS00345 +0.8 1.8 LysR family transcriptional regulator compare
RR42_RS34520 +0.8 1.1 transposase compare
RR42_RS32090 +0.8 2.0 hypothetical protein compare
RR42_RS02490 +0.8 3.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
RR42_RS16220 +0.8 1.1 DNA polymerase III subunit chi compare
RR42_RS31715 +0.8 2.2 hypothetical protein compare
RR42_RS33850 +0.8 1.9 hypothetical protein compare
RR42_RS34605 +0.8 2.5 hypothetical protein compare
RR42_RS27290 +0.8 1.5 hypothetical protein compare
RR42_RS00625 +0.8 1.1 hypothetical protein compare
RR42_RS19860 +0.8 0.7 tartronate semialdehyde reductase compare
RR42_RS11660 +0.8 2.4 hypothetical protein compare
RR42_RS25965 +0.8 1.8 LuxR family transcriptional regulator compare
RR42_RS22535 +0.8 1.8 ArsR family transcriptional regulator compare
RR42_RS11210 +0.8 2.2 microcystin LR degradation protein MlrC compare
RR42_RS31910 +0.7 1.0 acyl-CoA dehydrogenase compare
RR42_RS21450 +0.7 1.5 hypothetical protein compare
RR42_RS07115 +0.7 0.8 hypothetical protein compare
RR42_RS05810 +0.7 1.4 RNA polymerase sigma factor compare
RR42_RS32960 +0.7 1.5 2-dehydropantoate 2-reductase compare
RR42_RS34990 +0.7 1.9 ABC transporter permease compare
RR42_RS35320 +0.7 2.1 membrane protein compare
RR42_RS03820 +0.7 1.7 molybdenum cofactor biosynthesis protein MoaA compare
RR42_RS32505 +0.7 1.9 sulfonate ABC transporter ATP-binding protein compare
RR42_RS28400 +0.7 1.7 CoA-transferase compare
RR42_RS05945 +0.7 2.0 thioredoxin compare
RR42_RS32085 +0.7 1.0 hypothetical protein compare
RR42_RS05115 +0.7 1.2 LysR family transcriptional regulator compare
RR42_RS17970 +0.7 0.8 hypothetical protein compare
RR42_RS08210 +0.7 0.7 hypothetical protein compare
RR42_RS07860 +0.7 2.1 acetyltransferase compare
RR42_RS13965 +0.7 3.4 LysR family transcriptional regulator compare
RR42_RS02210 +0.7 0.6 succinate dehydrogenase compare
RR42_RS31975 +0.7 2.0 fatty acid--CoA ligase compare
RR42_RS03050 +0.7 2.2 energy transducer TonB compare
RR42_RS23140 +0.7 0.7 peptidylprolyl isomerase compare
RR42_RS06735 +0.7 1.3 hypothetical protein compare
RR42_RS19085 +0.7 1.3 cytochrome C biogenesis protein ResB compare
RR42_RS10415 +0.7 0.9 hypothetical protein compare
RR42_RS12080 +0.7 2.7 lipase compare
RR42_RS26605 +0.7 2.5 hypothetical protein compare
RR42_RS05075 +0.7 3.2 aminocarboxymuconate-semialdehyde decarboxylase compare
RR42_RS27180 +0.7 1.7 alkylhydroperoxidase compare
RR42_RS32570 +0.7 2.5 Vanillate O-demethylase oxidoreductase compare
RR42_RS33270 +0.7 1.5 hypothetical protein compare
RR42_RS04850 +0.7 1.3 hypothetical protein compare
RR42_RS00270 +0.7 1.7 amino acid ABC transporter compare
RR42_RS23095 +0.7 2.6 Zn-dependent hydrolase compare
RR42_RS04735 +0.7 0.9 hypothetical protein compare
RR42_RS21825 +0.7 1.6 hypothetical protein compare
RR42_RS09500 +0.7 2.4 dehydrogenase compare
RR42_RS11355 +0.6 2.6 MFS transporter compare
RR42_RS23080 +0.6 1.6 LysR family transcriptional regulator compare
RR42_RS21755 +0.6 1.3 shikimate dehydrogenase compare
RR42_RS23765 +0.6 1.9 tRNA-Gly compare
RR42_RS12425 +0.6 1.7 3-hydroxy-3-methylglutaryl-CoA lyase compare
RR42_RS19645 +0.6 1.6 DNA topoisomerase compare
RR42_RS12290 +0.6 2.6 alkanesulfonate monooxygenase compare
RR42_RS35240 +0.6 0.8 acyl-CoA dehydrogenase compare
RR42_RS21125 +0.6 1.0 membrane protein compare
RR42_RS22600 +0.6 1.4 heavy metal resistance protein CzcE compare
RR42_RS08175 +0.6 0.7 hypothetical protein compare
RR42_RS01285 +0.6 2.2 acyl-CoA dehydrogenase compare
RR42_RS22180 +0.6 1.7 hypothetical protein compare
RR42_RS32630 +0.6 2.7 acetaldehyde dehydrogenase compare
RR42_RS04965 +0.6 1.9 hypothetical protein compare
RR42_RS12085 +0.6 1.5 glyoxalase compare
RR42_RS06085 +0.6 2.4 peptidase compare
RR42_RS25305 +0.6 2.8 transposase compare
RR42_RS03185 +0.6 1.2 branched-chain amino acid permease compare
RR42_RS20610 +0.6 2.9 tripartite tricarboxylate transporter TctA compare
RR42_RS35450 +0.6 1.0 hypothetical protein compare
RR42_RS13425 +0.6 2.3 hypothetical protein compare
RR42_RS05755 +0.6 1.3 enoyl-CoA hydratase compare
RR42_RS29630 +0.6 1.8 hypothetical protein compare
RR42_RS20195 +0.6 0.8 ATPase F0F1 compare
RR42_RS23350 +0.6 2.1 flagellar biosynthesis protein FliR compare
RR42_RS05895 +0.6 1.2 rhombosortase compare
RR42_RS06895 +0.6 1.3 hypothetical protein compare
RR42_RS03020 +0.6 1.1 MarR family transcriptional regulator compare
RR42_RS28410 +0.6 1.4 dimethylmenaquinone methyltransferase compare
RR42_RS09255 +0.6 1.7 copper resistance protein CopQ compare
RR42_RS14880 +0.6 1.3 hypothetical protein compare
RR42_RS37055 +0.6 1.3 hypothetical protein compare
RR42_RS35660 +0.6 1.5 hypothetical protein compare
RR42_RS36355 +0.6 1.6 (2Fe-2S)-binding protein compare
RR42_RS25280 +0.6 3.2 3-hydroxy-3-methylglutaryl-CoA lyase compare
RR42_RS13530 +0.6 1.4 4-hydroxybenzoyl-CoA thioesterase compare
RR42_RS10920 +0.6 1.1 hypothetical protein compare
RR42_RS31900 +0.6 1.1 short-chain dehydrogenase compare
RR42_RS15545 +0.6 2.4 pilus assembly protein PilE compare
RR42_RS01650 +0.6 2.7 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS27985 +0.6 2.3 membrane protein compare
RR42_RS04585 +0.6 2.6 amino acid dehydrogenase compare
RR42_RS00360 +0.6 1.0 Asp/Glu/hydantoin racemase compare
RR42_RS15235 +0.6 1.5 hypothetical protein compare
RR42_RS35220 +0.6 1.0 peptide ABC transporter ATP-binding protein compare
RR42_RS08750 +0.6 2.4 hemerythrin compare
RR42_RS15060 +0.6 1.5 membrane protein compare
RR42_RS26515 +0.6 0.9 hypothetical protein compare
RR42_RS05385 +0.6 1.8 LOG family protein compare
RR42_RS20700 +0.6 2.2 GMC family oxidoreductase compare
RR42_RS10590 +0.6 0.8 hypothetical protein compare
RR42_RS10000 +0.6 1.7 LysR family transcriptional regulator compare
RR42_RS08790 +0.6 0.9 zinc-binding protein compare
RR42_RS22745 +0.6 2.2 phosphoribosylglycinamide formyltransferase compare
RR42_RS01655 +0.5 1.8 AMP-dependent synthetase compare
RR42_RS29335 +0.5 1.5 integrase compare
RR42_RS07045 +0.5 1.3 hypothetical protein compare
RR42_RS01215 +0.5 1.6 hypothetical protein compare
RR42_RS28835 +0.5 2.7 gluconate:H+ symporter (gntT) (from data) compare
RR42_RS11225 +0.5 0.8 peptide ABC transporter permease compare
RR42_RS16630 +0.5 2.4 hypothetical protein compare
RR42_RS06825 +0.5 2.1 hypothetical protein compare
RR42_RS31080 +0.5 1.4 hypothetical protein compare
RR42_RS20790 +0.5 1.5 isoprenylcysteine carboxyl methyltransferase compare
RR42_RS07220 +0.5 1.6 hypothetical protein compare
RR42_RS35600 +0.5 1.0 hypothetical protein compare
RR42_RS08390 +0.5 1.1 hypothetical protein compare
RR42_RS25490 +0.5 1.9 ABC transporter substrate-binding protein compare
RR42_RS02535 +0.5 2.7 metal ABC transporter permease compare
RR42_RS15755 +0.5 1.2 acetyltransferase compare
RR42_RS05095 +0.5 1.6 4-hyroxy-2-oxovalerate aldolase compare
RR42_RS24930 +0.5 0.6 AraC family transcriptional regulator compare
RR42_RS03545 +0.5 1.9 hypothetical protein compare
RR42_RS37005 +0.5 2.0 IclR family transcriptional regulator compare
RR42_RS34150 +0.5 1.5 cupin compare
RR42_RS31135 +0.5 1.6 hypothetical protein compare
RR42_RS01165 +0.5 1.7 methionine biosynthesis protein MetW compare
RR42_RS35100 +0.5 2.1 TetR family transcriptional regulator compare
RR42_RS06520 +0.5 2.9 short-chain dehydrogenase compare
RR42_RS27675 +0.5 1.7 esterase compare
RR42_RS09835 +0.5 1.4 chemotaxis protein compare
RR42_RS18610 +0.5 2.1 hypothetical protein compare
RR42_RS07870 +0.5 1.5 alkyl hydroperoxide reductase compare
RR42_RS13865 +0.5 1.0 hypothetical protein compare
RR42_RS11410 +0.5 1.0 hypothetical protein compare
RR42_RS23300 +0.5 2.3 hypothetical protein compare
RR42_RS11475 +0.5 2.9 pyrroloquinoline quinone biosynthesis protein PqqE compare
RR42_RS27665 +0.5 2.1 endoribonuclease L-PSP compare
RR42_RS24495 +0.5 1.9 hypothetical protein compare
RR42_RS13455 +0.5 1.7 phosphate ABC transporter ATP-binding protein compare
RR42_RS08840 +0.5 2.1 regulator of cell morphogenesis and NO signaling compare
RR42_RS05080 +0.5 1.8 3-hydroxyanthranilate 3,4-dioxygenase compare
RR42_RS08615 +0.5 0.5 membrane protein compare
RR42_RS08480 +0.5 1.6 hypothetical protein compare
RR42_RS14885 +0.5 1.0 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS34565 +0.5 0.8 GDP-mannose mannosyl hydrolase compare
RR42_RS04135 +0.5 0.7 pilus assembly protein CpaB compare
RR42_RS08320 +0.5 1.0 hypothetical protein compare
RR42_RS35990 +0.5 1.8 pilus assembly protein compare
RR42_RS16375 +0.5 1.4 short-chain dehydrogenase compare
RR42_RS02420 +0.5 0.5 SAM-dependent methyltransferase compare
RR42_RS18425 +0.5 0.7 hypothetical protein compare
RR42_RS15225 +0.5 0.6 RNA-binding protein compare
RR42_RS32145 +0.5 2.2 hypothetical protein compare
RR42_RS16780 +0.5 1.4 hypothetical protein compare
RR42_RS33070 +0.5 0.7 oxidoreductase compare
RR42_RS02540 +0.5 1.3 taurine ABC transporter permease compare
RR42_RS20570 +0.5 0.9 biopolymer transporter ExbD compare
RR42_RS07110 +0.5 1.1 hypothetical protein compare
RR42_RS21345 +0.5 2.2 acetylornithine deacetylase compare
RR42_RS28270 +0.5 1.7 TetR family transcriptional regulator compare
RR42_RS28910 +0.5 1.5 XRE family transcriptional regulator compare
RR42_RS21075 +0.5 0.5 phosphoribosyltransferase compare
RR42_RS23520 +0.5 1.7 thioesterase compare
RR42_RS12580 +0.5 1.2 phosphate transport regulator compare
RR42_RS09565 +0.5 1.0 hypothetical protein compare
RR42_RS06820 +0.5 2.0 hypothetical protein compare
RR42_RS03010 +0.5 0.9 acetyl-CoA acetyltransferase compare
RR42_RS12430 +0.5 1.0 LysR family transcriptional regulator compare
RR42_RS33860 +0.5 1.2 3-demethylubiquinone-9 3-methyltransferase compare
RR42_RS08240 +0.5 1.2 DNA-binding protein compare
RR42_RS17165 +0.5 0.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Glucuronamide in Cupriavidus basilensis FW507-4G11

For nitrogen source Glucuronamide across organisms