Experiment set3IT024 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 6; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.2 -5.0 NUDIX domain-containing protein compare
ABZR87_RS08630 -5.7 -6.8 dihydroorotase compare
ABZR87_RS08695 -5.3 -18.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS13645 -4.6 -2.1 hypothetical protein compare
ABZR87_RS08795 -4.5 -3.1 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS04975 -4.4 -3.1 peptide deformylase compare
ABZR87_RS00435 -4.4 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13705 -4.3 -2.9 integration host factor subunit alpha compare
ABZR87_RS05305 -4.2 -13.0 TetR family transcriptional regulator compare
ABZR87_RS14115 -4.1 -4.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS08990 -3.9 -7.1 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS05100 -3.7 -5.5 RNA polymerase-binding protein DksA compare
ABZR87_RS01255 -3.7 -11.9 LysR substrate-binding domain-containing protein compare
ABZR87_RS08970 -3.6 -9.3 protein TolQ compare
ABZR87_RS16960 -3.5 -3.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS10170 -3.3 -5.0 RseA family anti-sigma factor compare
ABZR87_RS06385 -3.2 -11.2 CHASE3 domain-containing protein compare
ABZR87_RS07510 -3.1 -5.2 LysR family transcriptional regulator compare
ABZR87_RS14375 -3.1 -3.7 fumarate hydratase compare
ABZR87_RS10980 -3.1 -1.9 tRNA-Leu compare
ABZR87_RS13790 -3.1 -9.5 chorismate synthase compare
ABZR87_RS09515 -3.1 -2.9 cysteine synthase CysM compare
ABZR87_RS12785 -3.1 -5.5 endopeptidase La compare
ABZR87_RS08980 -3.0 -4.3 cell envelope integrity protein TolA compare
ABZR87_RS16185 -3.0 -2.9 dCTP deaminase compare
ABZR87_RS04995 -3.0 -2.9 DNA topoisomerase III compare
ABZR87_RS08985 -3.0 -12.8 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS11940 -3.0 -2.1 SsrA-binding protein SmpB compare
ABZR87_RS09935 -3.0 -2.1 amino acid aminotransferase compare
ABZR87_RS16170 -2.9 -3.5 argininosuccinate lyase compare
ABZR87_RS12790 -2.9 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS14965 -2.9 -4.5 DUF3619 family protein compare
ABZR87_RS08720 -2.9 -12.8 HAD family hydrolase compare
ABZR87_RS08700 -2.9 -8.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06400 -2.9 -6.5 response regulator transcription factor compare
ABZR87_RS07035 -2.9 -8.4 RNase adapter RapZ compare
ABZR87_RS07355 -2.9 -6.3 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS10120 -2.8 -1.9 YceD family protein compare
ABZR87_RS10085 -2.8 -2.5 Rne/Rng family ribonuclease compare
ABZR87_RS02850 -2.8 -3.3 elongation factor Tu compare
ABZR87_RS04865 -2.8 -5.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS13300 -2.8 -6.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS12965 -2.8 -6.5 tail protein X compare
ABZR87_RS15715 -2.8 -9.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS06495 -2.8 -2.7 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS09615 -2.8 -1.9 50S ribosomal protein L19 compare
ABZR87_RS02555 -2.7 -7.0 ABC transporter ATP-binding protein compare
ABZR87_RS02590 -2.7 -9.9 3-dehydroquinate synthase compare
ABZR87_RS22920 -2.7 -5.4 phosphogluconate dehydratase compare
ABZR87_RS08625 -2.6 -1.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS11245 -2.6 -5.6 translational GTPase TypA compare
ABZR87_RS04940 -2.6 -7.1 PAS domain-containing sensor histidine kinase compare
ABZR87_RS01225 -2.6 -3.9 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS08710 -2.6 -14.3 sugar transferase compare
ABZR87_RS01245 -2.6 -3.1 Dps family protein compare
ABZR87_RS08665 -2.6 -8.3 GNAT family N-acetyltransferase compare
ABZR87_RS01615 -2.6 -1.4 RNB domain-containing ribonuclease compare
ABZR87_RS02440 -2.5 -9.1 twin-arginine translocase subunit TatC compare
ABZR87_RS11010 -2.5 -3.0 oxidative damage protection protein compare
ABZR87_RS10395 -2.5 -7.8 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS08680 -2.4 -9.0 glycosyltransferase compare
ABZR87_RS07625 -2.4 -2.3 Holliday junction branch migration protein RuvA compare
ABZR87_RS02640 -2.4 -10.9 diaminopimelate decarboxylase compare
ABZR87_RS07620 -2.4 -2.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS00795 -2.4 -3.6 site-specific tyrosine recombinase XerD compare
ABZR87_RS11980 -2.3 -1.5 cold-shock protein compare
ABZR87_RS06350 -2.3 -8.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS10195 -2.3 -3.0 signal peptidase I compare
ABZR87_RS15500 -2.3 -7.8 glycosyltransferase compare
ABZR87_RS21950 -2.3 -7.4 hypothetical protein compare
ABZR87_RS02550 -2.3 -4.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS00970 -2.3 -1.5 molecular chaperone DnaJ compare
ABZR87_RS14675 -2.3 -1.5 glyoxalase compare
ABZR87_RS08660 -2.2 -3.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS02540 -2.2 -6.4 VacJ family lipoprotein compare
ABZR87_RS08715 -2.2 -14.9 ATP-grasp domain-containing protein compare
ABZR87_RS01675 -2.2 -2.1 carbohydrate kinase family protein compare
ABZR87_RS05590 -2.2 -1.5 orotate phosphoribosyltransferase compare
ABZR87_RS17145 -2.2 -9.8 AMP nucleosidase compare
ABZR87_RS11790 -2.2 -2.5 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS00875 -2.1 -4.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS05645 -2.1 -4.7 SDR family oxidoreductase compare
ABZR87_RS07050 -2.1 -2.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS05570 -2.1 -6.7 lysophospholipid acyltransferase family protein compare
ABZR87_RS01280 -2.1 -4.5 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS00360 -2.0 -2.2 acyl-CoA desaturase compare
ABZR87_RS01980 -2.0 -2.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS01885 -2.0 -3.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS07705 -2.0 -2.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS02445 -2.0 -3.6 Sec-independent protein translocase protein TatB compare
ABZR87_RS14190 -2.0 -10.0 DUF2589 domain-containing protein compare
ABZR87_RS10785 -2.0 -3.3 exodeoxyribonuclease V subunit beta compare
ABZR87_RS16055 -2.0 -6.0 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS07005 -2.0 -2.5 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS11125 -2.0 -5.5 cell division protein ZapE compare
ABZR87_RS02545 -2.0 -5.4 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS08705 -1.9 -15.1 glycosyltransferase family 4 protein compare
ABZR87_RS08670 -1.9 -8.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS12345 -1.9 -1.5 dethiobiotin synthase compare
ABZR87_RS15705 -1.9 -4.0 UvrD-helicase domain-containing protein compare
ABZR87_RS10565 -1.9 -1.3 cupin domain-containing protein compare
ABZR87_RS00340 -1.8 -3.0 50S ribosomal protein L33 compare
ABZR87_RS07055 -1.8 -8.0 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS08725 -1.8 -13.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS11195 -1.8 -7.3 pseudouridine synthase compare
ABZR87_RS06705 -1.8 -10.3 glutamate--cysteine ligase compare
ABZR87_RS16270 -1.8 -1.6 cold-shock protein compare
ABZR87_RS15480 -1.8 -8.5 glycosyltransferase family 25 protein compare
ABZR87_RS06745 -1.8 -5.4 S41 family peptidase compare
ABZR87_RS14605 -1.8 -9.9 aconitate hydratase AcnA compare
ABZR87_RS07635 -1.8 -1.7 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS09625 -1.8 -9.5 CobD/CbiB family protein compare
ABZR87_RS08690 -1.8 -13.8 polysaccharide biosynthesis protein compare
ABZR87_RS04125 -1.8 -3.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS10610 -1.8 -1.2 inositol monophosphatase family protein compare
ABZR87_RS09505 -1.8 -5.4 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS10190 -1.8 -6.6 translation elongation factor 4 compare
ABZR87_RS02655 -1.8 -9.2 anti-sigma factor compare
ABZR87_RS08205 -1.7 -1.8 hypothetical protein compare
ABZR87_RS15495 -1.7 -9.0 O-antigen ligase family protein compare
ABZR87_RS02535 -1.7 -4.2 phospholipid-binding protein MlaC compare
ABZR87_RS07735 -1.7 -3.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS02220 -1.7 -7.0 redox-regulated ATPase YchF compare
ABZR87_RS02385 -1.7 -4.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS08730 -1.7 -14.3 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR87_RS12795 -1.6 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS10550 -1.6 -1.4 outer membrane protein assembly factor BamC compare
ABZR87_RS07965 -1.6 -4.3 recombinase RecA compare
ABZR87_RS00835 -1.6 -2.2 argininosuccinate synthase compare
ABZR87_RS10780 -1.6 -2.6 PD-(D/E)XK nuclease family protein compare
ABZR87_RS04265 -1.6 -6.1 phenylalanine 4-monooxygenase compare
ABZR87_RS05350 -1.6 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS01745 -1.6 -3.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS03410 -1.6 -4.4 type II secretion system major pseudopilin GspG compare
ABZR87_RS04880 -1.5 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS10175 -1.5 -4.1 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02375 -1.5 -6.3 cytochrome c1 compare
ABZR87_RS11435 -1.5 -2.5 Mth938-like domain-containing protein compare
ABZR87_RS03425 -1.5 -6.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS20555 -1.5 -5.5 helix-turn-helix transcriptional regulator compare
ABZR87_RS02380 -1.5 -7.5 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS05065 -1.5 -3.0 tyrosine recombinase XerC compare
ABZR87_RS04500 -1.5 -2.5 hypothetical protein compare
ABZR87_RS01685 -1.5 -4.7 histone H1-like DNA-binding protein compare
ABZR87_RS01855 -1.5 -8.0 A24 family peptidase compare
ABZR87_RS03440 -1.5 -6.9 type II secretion system protein GspM compare
ABZR87_RS01085 -1.5 -3.9 rhombosortase compare
ABZR87_RS15440 -1.5 -1.0 ribonuclease G compare
ABZR87_RS16735 -1.4 -9.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS12800 -1.4 -2.0 trigger factor compare
ABZR87_RS12970 -1.4 -1.9 putative holin compare
ABZR87_RS06645 -1.4 -1.9 TlpA disulfide reductase family protein compare
ABZR87_RS01275 -1.4 -3.5 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS06845 -1.4 -5.7 heme o synthase compare
ABZR87_RS01035 -1.4 -3.8 histidine utilization repressor compare
ABZR87_RS06855 -1.4 -3.3 RNA polymerase sigma factor RpoH compare
ABZR87_RS05170 -1.4 -1.0 acetylglutamate kinase compare
ABZR87_RS16125 -1.4 -5.2 heme biosynthesis protein HemY compare
ABZR87_RS00085 -1.4 -3.3 ABC transporter ATP-binding protein compare
ABZR87_RS16885 -1.4 -2.4 hypothetical protein compare
ABZR87_RS16250 -1.4 -2.8 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS10400 -1.4 -1.8 hypothetical protein compare
ABZR87_RS17650 -1.4 -5.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14890 -1.4 -1.2 preprotein translocase subunit SecG compare
ABZR87_RS00440 -1.4 -7.0 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS05060 -1.4 -3.5 DUF484 family protein compare
ABZR87_RS14490 -1.4 -6.2 tryptophan synthase subunit alpha compare
ABZR87_RS14500 -1.3 -8.2 tryptophan synthase subunit beta compare
ABZR87_RS12955 -1.3 -3.7 terminase endonuclease subunit compare
ABZR87_RS12150 -1.3 -2.9 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS13290 -1.3 -3.3 3-ketoacyl-ACP reductase compare
ABZR87_RS20155 -1.3 -4.0 type VI secretion system-associated protein TagF compare
ABZR87_RS09895 -1.3 -1.2 DUF1841 family protein compare
ABZR87_RS17910 -1.3 -7.5 IclR family transcriptional regulator compare
ABZR87_RS18695 -1.3 -6.5 sugar-binding transcriptional regulator compare
ABZR87_RS01450 -1.3 -2.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS10240 -1.3 -0.9 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS07730 -1.3 -2.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS02160 -1.3 -3.6 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS16540 -1.3 -2.3 MarR family transcriptional regulator compare
ABZR87_RS08640 -1.3 -3.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS03430 -1.3 -8.1 type II secretion system minor pseudopilin GspK compare
ABZR87_RS01270 -1.2 -5.0 ATP-dependent DNA helicase RecG compare
ABZR87_RS02145 -1.2 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02155 -1.2 -5.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS13475 -1.2 -4.8 PAS domain S-box protein compare
ABZR87_RS03450 -1.2 -7.6 type II secretion system secretin GspD compare
ABZR87_RS18165 -1.2 -1.9 hypothetical protein compare
ABZR87_RS15540 -1.2 -5.1 DEAD/DEAH box helicase compare
ABZR87_RS02325 -1.2 -3.1 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS23360 -1.2 -2.5 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS02595 -1.2 -6.3 shikimate kinase compare
ABZR87_RS09465 -1.2 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS00285 -1.2 -0.8 acetylornithine transaminase compare
ABZR87_RS03455 -1.2 -7.7 type II secretion system ATPase GspE compare
ABZR87_RS23415 -1.2 -2.5 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS13145 -1.2 -3.0 hypothetical protein compare
ABZR87_RS14970 -1.2 -1.8 DUF3106 domain-containing protein compare
ABZR87_RS03420 -1.2 -1.0 type II secretion system minor pseudopilin GspI compare
ABZR87_RS22035 -1.1 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in soil experiments