Experiment set3IT023 for Caulobacter crescentus NA1000

Compare to:

PYE with Paraquat dichloride 0.015 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03858 +4.8 33.0 protein translocase subunit secB compare
CCNA_02037 +4.4 28.8 ATP-dependent endopeptidase Lon compare
CCNA_01059 +4.0 21.2 S-layer protein rsaA compare
CCNA_01525 +4.0 17.3 flagellar biosynthesis repressor flbT compare
CCNA_01061 +3.9 13.8 type I secretion adaptor protein RsaE compare
CCNA_02387 +3.9 28.5 glutathione reductase compare
CCNA_01060 +3.7 16.0 type I protein secretion ATP-binding protein RsaD compare
CCNA_02030 +3.5 19.0 hypothetical protein compare
CCNA_02448 +3.4 19.5 hypothetical protein compare
CCNA_00011 +3.3 6.9 chaperone protein DnaJ compare
CCNA_02026 +3.2 21.5 hypothetical protein compare
CCNA_02225 +3.1 18.6 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_02447 +3.0 17.5 PspA/IM30 family regulatory protein compare
CCNA_03043 +3.0 9.6 type IV pilin protein pilA compare
CCNA_01712 +3.0 25.5 CopY/TcrY family transcriptional repressor compare
CCNA_02028 +3.0 7.2 NTF2 superfamily protein compare
CCNA_02732 +3.0 7.8 hypothetical protein compare
CCNA_02957 +2.9 10.6 ArsR-family transcriptional regulator compare
CCNA_01979 +2.9 11.8 LexA repressor compare
CCNA_02000 +2.8 5.6 SSU ribosomal protein S2P compare
CCNA_03643 +2.8 4.8 succinate dehydrogenase membrane anchor subunit compare
CCNA_03030 +2.8 14.4 cytochrome c2 compare
CCNA_00296 +2.8 15.3 phosphate regulon response regulator PhoB compare
CCNA_00756 +2.7 5.4 hypothetical protein compare
CCNA_00699 +2.7 15.3 LSU ribosomal protein L28P compare
CCNA_00521 +2.7 7.7 antitoxin protein compare
CCNA_02025 +2.7 9.5 hypothetical protein compare
CCNA_01968 +2.7 5.7 pentapeptide repeats containing protein compare
CCNA_01553 +2.7 14.1 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_00497 +2.7 15.3 putative rhamnosyl transferase compare
CCNA_01058 +2.7 14.3 helix-turn-helix transcriptional regulator compare
CCNA_02328 +2.7 2.7 cell cycle regulatory protein GcrA compare
CCNA_03689 +2.7 15.9 alanine dehydrogenase compare
CCNA_02980 +2.6 17.2 tryptophan 2,3-dioxygenase compare
CCNA_01526 +2.6 11.3 flagellar biosynthesis regulatory protein flaF compare
CCNA_03064 +2.6 12.5 PadR-family transcriptional regulator compare
CCNA_02103 +2.6 17.6 hypothetical protein compare
CCNA_01815 +2.6 18.5 nitrogen assimilation regulatory protein NtrC compare
CCNA_03289 +2.5 15.7 HicB-family RNA-binding protein compare
CCNA_03612 +2.5 13.3 HTH XRE-family transcriptional regulator compare
CCNA_00161 +2.5 18.8 hypothetical protein compare
CCNA_03252 +2.5 16.8 CopY/TcrY-family transcriptional regulator compare
CCNA_00389 +2.5 3.9 aminomethyltransferase family protein compare
CCNA_03129 +2.5 15.4 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03863 +2.5 6.6 hypothetical protein compare
CCNA_00769 +2.5 11.8 TetR family transcriptional regulator compare
CCNA_R0037 +2.5 8.8 tRNA-Glu compare
CCNA_00518 +2.5 11.0 LSU ribosomal protein L25P compare
CCNA_01242 +2.5 16.8 amino acid permease compare
CCNA_02242 +2.5 15.1 PHB granule-associated protein, phasin2 compare
CCNA_00939 +2.4 10.0 MarR-family transcriptional regulator compare
CCNA_01851 +2.4 19.5 quinol cytochrome oxidase polypeptide II compare
CCNA_03824 +2.4 15.6 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_02553 +2.4 18.0 ATP-dependent clp protease ATP-binding subunit ClpA compare
CCNA_01814 +2.4 17.7 nitrogen regulation protein ntrB compare
CCNA_00846 +2.4 19.9 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02552 +2.4 8.3 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_02339 +2.4 14.5 methyltransferase compare
CCNA_02576 +2.4 16.1 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01393 +2.4 16.6 soluble lytic murein transglycosylase compare
CCNA_01199 +2.3 12.2 glucose-1-phosphate thymidylyltransferase compare
CCNA_01931 +2.3 14.9 TetR-family transcriptional regulator compare
CCNA_01751 +2.3 9.7 aminodeoxychorismate lyase compare
CCNA_01006 +2.3 7.7 flagellar hook-basal body complex protein FliE compare
CCNA_00950 +2.3 16.0 flagellar M-ring protein FliF compare
CCNA_02171 +2.3 15.3 nucleoside permease nupC compare
CCNA_01361 +2.3 5.8 PepSY superfamily protein compare
CCNA_02910 +2.3 18.3 TonB-dependent receptor compare
CCNA_02199 +2.2 17.2 methyltransferase compare
CCNA_00162 +2.2 12.5 hypothetical protein compare
CCNA_02324 +2.2 13.6 heat shock protein 33 hsp33 compare
CCNA_00215 +2.2 12.3 SapC surface layer protein compare
CCNA_02619 +2.2 14.6 stomatin/prohibitin-related protein compare
CCNA_03989 +2.2 16.8 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01840 +2.2 16.9 MerR-family transcriptional regulator compare
CCNA_00781 +2.2 15.0 two-component receiver protein CpdR compare
CCNA_02021 +2.2 6.8 hypothetical protein compare
CCNA_01780 +2.1 14.0 exopolyphosphatase compare
CCNA_01453 +2.1 8.7 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_03271 +2.1 15.2 methionine gamma-lyase compare
CCNA_03136 +2.1 8.8 flagellar export protein FliJ compare
CCNA_01086 +2.1 12.9 GTP-binding protein lepA compare
CCNA_02941 +2.1 6.6 transcription elongation factor greA compare
CCNA_02575 +2.1 5.0 hypothetical protein compare
CCNA_01295 +2.1 12.0 integral membrane protein compare
CCNA_03280 +2.1 18.3 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_03805 +2.1 13.0 PadR-family transcriptional regulator compare
CCNA_01186 +2.1 6.4 hypothetical protein compare
CCNA_00527 +2.1 12.7 hypothetical protein compare
CCNA_01964 +2.1 2.9 NADH dehydrogenase compare
CCNA_01008 +2.1 14.9 urocanate hydratase compare
CCNA_03062 +2.1 12.7 cell wall hydrolase family protein compare
CCNA_03808 +2.1 12.4 organic solvent resistance transport system Ttg2C protein compare
CCNA_03287 +2.1 14.6 PadR-family transcriptional regulator compare
CCNA_00147 +2.1 4.1 hypothetical protein compare
CCNA_01237 +2.1 2.2 hypothetical protein compare
CCNA_01420 +2.0 7.5 NrdR family transcriptional regulator compare
CCNA_03123 +2.0 12.4 ArsR-family transcriptional regulator compare
CCNA_03519 +2.0 8.6 PadR-family transcriptional regulator compare
CCNA_02075 +2.0 2.6 peptidoglycan binding endopeptidase DipM compare
CCNA_00999 +2.0 9.0 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_02243 +2.0 14.5 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_00505 +2.0 9.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02135 +2.0 10.0 6-phosphogluconolactonase compare
CCNA_00924 +2.0 8.2 MarR/EmrR family transcriptional regulator compare
CCNA_03401 +2.0 9.9 conserved hypothetical cytosolic protein compare
CCNA_03108 +2.0 15.6 TonB-dependent outer membrane receptor compare
CCNA_01094 +2.0 4.9 hypothetical protein compare
CCNA_03325 +2.0 8.7 hypothetical protein compare
CCNA_00872 +2.0 6.3 glutaredoxin compare
CCNA_00153 +2.0 6.3 adenine nucleotide exchange factor GrpE compare
CCNA_02567 +2.0 13.5 sensory transduction histidine kinase pleC compare
CCNA_01801 +2.0 10.7 hypothetical protein compare
CCNA_03215 +2.0 13.2 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01164 +1.9 12.9 O-linked N-acetylglucosamine transferase compare
CCNA_03961 +1.9 5.2 hypothetical protein compare
CCNA_01181 +1.9 10.9 hypothetical protein compare
CCNA_00998 +1.9 10.2 ROS/MUCR transcriptional regulator compare
CCNA_02617 +1.9 15.1 histidinol-phosphate aminotransferase compare
CCNA_01959 +1.9 4.4 3-dehydroquinate dehydratase compare
CCNA_02004 +1.9 4.2 SOS-induced inhibitor of cell division SidA compare
CCNA_01573 +1.9 9.1 ArsR-family transcriptional regulator compare
CCNA_00952 +1.9 10.5 flagellar assembly protein FlbE/FliH compare
CCNA_02419 +1.9 7.4 TonB1 protein compare
CCNA_02081 +1.9 6.4 Sec-independent protein translocase protein tatB compare
CCNA_03479 +1.9 11.0 MarR-family transcriptional regulator compare
CCNA_03938 +1.9 5.7 hypothetical protein compare
CCNA_02330 +1.9 7.6 hypothetical protein compare
CCNA_03740 +1.9 8.8 cysteine synthase compare
CCNA_03598 +1.9 3.7 two-component sensor histidine kinase DivL compare
CCNA_00032 +1.9 6.0 antitoxin protein VapB compare
CCNA_01065 +1.8 11.5 glycosyltransferase compare
CCNA_03807 +1.8 9.8 organic solvent resistance transport system Ttg2D protein compare
CCNA_03748 +1.8 10.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
CCNA_01603 +1.8 8.8 aspartate aminotransferase compare
CCNA_02646 +1.8 3.2 cell division protein MraZ compare
CCNA_01918 +1.8 10.6 cyclic di-GMP effector protein PopA compare
CCNA_00920 +1.8 4.9 hypothetical protein compare
CCNA_02616 +1.8 12.8 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01066 +1.8 11.9 glycosyltransferase compare
CCNA_03012 +1.8 7.8 peroxiredoxin compare
CCNA_03951 +1.8 7.6 hypothetical protein compare
CCNA_03464 +1.8 6.9 glycine cleavage system H protein compare
CCNA_01913 +1.8 13.6 MarR-family transcriptional regulator compare
CCNA_00953 +1.8 5.3 flagellar motor switch protein FliN compare
CCNA_03681 +1.8 11.4 ABC transporter ATP-binding protein compare
CCNA_00944 +1.8 9.2 flagellar hook length determination protein compare
CCNA_02287 +1.8 9.7 TetR-family transcriptional regulator compare
CCNA_00834 +1.8 9.0 flagellin FljM compare
CCNA_01763 +1.8 10.1 multifunctional aminopeptidase compare
CCNA_00447 +1.8 10.5 chemotaxis protein cheD compare
CCNA_00951 +1.8 10.2 flagellar motor switch protein FliG compare
CCNA_02416 +1.8 8.5 DNA-binding protein HU compare
CCNA_02728 +1.8 9.3 hypothetical protein compare
CCNA_03913 +1.7 2.1 hypothetical protein compare
CCNA_01804 +1.7 11.8 glutathione peroxidase compare
CCNA_01433 +1.7 6.0 integration host factor alpha-subunit compare
CCNA_01020 +1.7 9.4 LacI-family transcriptional regulator compare
CCNA_00441 +1.7 8.9 chemotaxis receiver domain protein cheYI compare
CCNA_03806 +1.7 11.5 outer membrane lipoprotein compare
CCNA_01678 +1.7 8.9 arginine N-succinyltransferase, beta chain compare
CCNA_03762 +1.7 4.6 acetolactate synthase-related protein compare
CCNA_01062 +1.7 11.3 GDP-mannose 4,6 dehydratase compare
CCNA_01541 +1.7 10.5 LysR-family transcriptional regulator compare
CCNA_02138 +1.7 8.8 hypothetical protein compare
CCNA_01011 +1.7 8.2 imidazolonepropionase compare
CCNA_02252 +1.7 4.6 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_00073 +1.7 13.6 HemY domain membrane protein compare
CCNA_03680 +1.7 14.9 aminopeptidase N compare
CCNA_00292 +1.7 3.9 phosphate transport system permease protein pstC compare
CCNA_01593 +1.7 9.6 Xaa-pro aminopeptidase compare
CCNA_00264 +1.7 9.0 C4-dicarboxylate transport protein compare
CCNA_01684 +1.7 8.9 phenylalanine-4-hydroxylase compare
CCNA_00210 +1.7 13.4 TonB-dependent receptor compare
CCNA_03089 +1.6 10.1 hypothetical protein compare
CCNA_00072 +1.6 10.5 hypothetical protein compare
CCNA_01826 +1.6 9.2 vitamin B12 receptor compare
CCNA_00803 +1.6 5.9 chemotaxis protein cheW compare
CCNA_01679 +1.6 8.6 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01528 +1.6 10.0 flagellin fljK compare
CCNA_02644 +1.6 4.1 cell division protein FtsL compare
CCNA_01926 +1.6 7.0 GGDEF diguanylate cyclase DgcB compare
CCNA_01722 +1.6 3.5 hypothetical protein compare
CCNA_00013 +1.6 13.3 protein-PII uridylyltransferase compare
CCNA_02534 +1.6 1.5 hypothetical protein compare
CCNA_00079 +1.6 6.7 MerR-family transcriptional regulator compare
CCNA_R0054 +1.6 3.3 tRNA-Gly compare
CCNA_01406 +1.6 6.1 metal-dependent hydrolase compare
CCNA_01681 +1.6 5.7 RimI-like acetyltransferase compare
CCNA_00324 +1.6 3.3 ExbD-family protein compare
CCNA_01690 +1.6 4.9 MAPEG family membrane protein compare
CCNA_01850 +1.6 12.3 quinol cytochrome oxidase polypeptide I compare
CCNA_01643 +1.6 8.2 arginine-tRNA-protein transferase compare
CCNA_01193 +1.6 11.8 amylosucrase compare
CCNA_03132 +1.6 5.4 transcriptional regulator, antitoxin protein higA compare
CCNA_02151 +1.6 6.8 exodeoxyribonuclease VII small subunit compare
CCNA_03371 +1.6 6.7 bacterioferritin compare
CCNA_02805 +1.6 6.3 hypothetical protein compare
CCNA_00031 +1.6 9.0 toxin protein VapC compare
CCNA_03352 +1.6 7.5 YebC/PmpR transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For stress Paraquat dichloride in Caulobacter crescentus NA1000

For stress Paraquat dichloride across organisms