Experiment set3IT022 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with methylglyoxal 0.004 vol%

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2106 -2.6 -3.8 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3143 -2.4 -3.5 RecA protein compare
Pf1N1B4_2005 -2.1 -2.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2721 -2.0 -10.4 AMP nucleosidase (EC 3.2.2.4) conserved
Pf1N1B4_3833 -2.0 -9.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2949 -2.0 -3.6 FIG00956396: hypothetical protein compare
Pf1N1B4_2224 -2.0 -2.9 FIG00953390: hypothetical protein compare
Pf1N1B4_1619 -2.0 -10.2 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2885 -1.8 -6.2 Paraquat-inducible protein A compare
Pf1N1B4_2886 -1.7 -10.2 Paraquat-inducible protein B compare
Pf1N1B4_1307 -1.7 -2.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2105 -1.7 -2.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4596 -1.7 -2.5 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf1N1B4_615 -1.6 -3.0 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_2917 -1.6 -7.8 FIG140336: TPR domain protein compare
Pf1N1B4_1641 -1.6 -9.2 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_2352 -1.5 -5.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1317 -1.5 -2.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_3667 -1.5 -5.8 Nucleoside ABC transporter, periplasmic nucleoside-binding protein conserved
Pf1N1B4_5498 -1.4 -2.3 hypothetical protein compare
Pf1N1B4_1234 -1.4 -4.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2912 -1.4 -2.4 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1869 -1.4 -6.6 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_2874 -1.3 -2.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2870 -1.3 -1.9 Regulator of competence-specific genes compare
Pf1N1B4_5095 -1.3 -2.2 hypothetical protein compare
Pf1N1B4_5747 -1.3 -2.8 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_6035 -1.3 -3.5 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_1544 -1.3 -6.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_844 -1.3 -4.4 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf1N1B4_3966 -1.3 -2.1 serine/threonine protein kinase compare
Pf1N1B4_5077 -1.3 -2.7 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_3613 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_1462 -1.2 -8.9 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_1236 -1.2 -5.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3093 -1.2 -1.7 Outer membrane protein H precursor compare
Pf1N1B4_3668 -1.2 -5.2 Nucleoside ABC transporter, periplasmic nucleoside-binding protein conserved
Pf1N1B4_2884 -1.1 -4.1 Paraquat-inducible protein A compare
Pf1N1B4_1870 -1.1 -2.4 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1872 -1.1 -6.0 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_2054 -1.1 -3.1 FIG00964469: hypothetical protein compare
Pf1N1B4_4212 -1.1 -1.9 Gfa-like protein compare
Pf1N1B4_5371 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_2372 -1.1 -3.5 Transcriptional regulator, LysR family compare
Pf1N1B4_4882 -1.1 -4.5 Transcriptional regulator MexT compare
Pf1N1B4_1191 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_2975 -1.1 -1.6 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_2609 -1.0 -7.4 Catalase (EC 1.11.1.6) compare
Pf1N1B4_5031 -1.0 -3.2 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_2114 -1.0 -4.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_5912 -1.0 -3.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_644 -1.0 -1.7 Cold shock protein CspC compare
Pf1N1B4_2171 -1.0 -1.7 Tyrosine recombinase XerC compare
Pf1N1B4_275 -1.0 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_4062 -1.0 -4.5 FIG065221: Holliday junction DNA helicase conserved
Pf1N1B4_2359 -1.0 -2.8 Chemotaxis signal transduction protein compare
Pf1N1B4_2611 -1.0 -7.6 Excinuclease ABC subunit A conserved
Pf1N1B4_3074 -1.0 -1.3 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_5018 -1.0 -2.5 FIG00962345: hypothetical protein compare
Pf1N1B4_3817 -1.0 -3.6 FIG008443: hypothetical protein compare
Pf1N1B4_2048 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_3742 -1.0 -1.8 Oxidoreductase, zinc-binding compare
Pf1N1B4_3687 -1.0 -2.8 FIG00953885: hypothetical protein compare
Pf1N1B4_1235 -1.0 -4.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_126 -1.0 -2.1 Pirin compare
Pf1N1B4_3012 -1.0 -3.0 Thiol:disulfide interchange protein DsbC compare
Pf1N1B4_4777 -1.0 -2.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_2711 -0.9 -2.5 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_3559 -0.9 -6.9 Aromatic amino acid transport protein AroP compare
Pf1N1B4_544 -0.9 -2.5 Small-conductance mechanosensitive channel compare
Pf1N1B4_2177 -0.9 -1.2 FIG00953342: hypothetical protein compare
Pf1N1B4_5306 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_1511 -0.9 -1.9 FIG027190: Putative transmembrane protein compare
Pf1N1B4_2035 -0.9 -2.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_6036 -0.9 -1.7 FIG00953132: hypothetical protein compare
Pf1N1B4_835 -0.9 -2.2 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_695 -0.9 -2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_1906 -0.9 -2.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2209 -0.9 -5.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1730 -0.9 -2.4 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_4335 -0.9 -1.9 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_5519 -0.9 -2.8 hypothetical protein compare
Pf1N1B4_1057 -0.9 -1.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3544 -0.9 -3.2 Nitroreductase family protein compare
Pf1N1B4_1336 -0.9 -1.0 Putative multicopper oxidases compare
Pf1N1B4_3582 -0.9 -1.5 C-methyltransferase compare
Pf1N1B4_3443 -0.9 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_1613 -0.8 -1.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_5649 -0.8 -1.6 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_4041 -0.8 -2.6 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_1558 -0.8 -2.2 Transcriptional regulator PhaD compare
Pf1N1B4_3998 -0.8 -2.7 putative exported protein compare
Pf1N1B4_3869 -0.8 -6.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_4839 -0.8 -1.6 lipoprotein compare
Pf1N1B4_3956 -0.8 -3.3 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf1N1B4_4518 -0.8 -1.4 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_4603 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_4362 -0.8 -3.2 hypothetical protein compare
Pf1N1B4_4024 -0.8 -1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_339 -0.8 -1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2674 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_5040 -0.8 -2.7 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf1N1B4_4818 -0.8 -1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3109 -0.8 -2.8 S-formylglutathione hydrolase (EC 3.1.2.12) compare
Pf1N1B4_5777 -0.8 -1.9 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_5512 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_3723 -0.8 -0.9 FIG00957314: hypothetical protein compare
Pf1N1B4_2891 -0.8 -2.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_4038 -0.8 -2.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2037 -0.8 -2.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_4544 -0.8 -1.7 Uncharacterized protein ImpA compare
Pf1N1B4_3762 -0.8 -3.6 FIG137887: membrane protein related to purine degradation compare
Pf1N1B4_475 -0.8 -2.8 ABC-type multidrug transport system, permease component compare
Pf1N1B4_3965 -0.8 -1.6 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_4657 -0.8 -2.1 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_649 -0.8 -2.4 Small-conductance mechanosensitive channel compare
Pf1N1B4_2052 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_3134 -0.8 -1.6 probable tail fiber assembly-like protein compare
Pf1N1B4_239 -0.8 -2.4 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_4004 -0.8 -1.4 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_724 -0.8 -1.8 DNA-binding response regulator ColR compare
Pf1N1B4_1581 -0.8 -1.3 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_237 -0.8 -2.1 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_5022 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_3011 -0.8 -1.6 Tyrosine recombinase XerD compare
Pf1N1B4_4217 -0.8 -3.3 MISCELLANEOUS; Hypothetical/Global homology compare
Pf1N1B4_2097 -0.8 -3.1 Serine/threonine protein kinase (EC 2.7.11.1) compare
Pf1N1B4_2823 -0.8 -1.5 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_5342 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_4225 -0.8 -2.7 transcriptional regulator, AraC family compare
Pf1N1B4_4671 -0.8 -1.8 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_1936 -0.8 -3.6 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_2924 -0.7 -1.6 FIG00955589: hypothetical protein compare
Pf1N1B4_4699 -0.7 -1.5 Multidrug translocase MdfA compare
Pf1N1B4_3870 -0.7 -6.4 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_1916 -0.7 -1.5 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_3906 -0.7 -2.3 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3972 -0.7 -2.9 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_1008 -0.7 -1.2 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_2768 -0.7 -2.4 DNA repair protein RadA compare
Pf1N1B4_1390 -0.7 -2.0 FIG00956548: hypothetical protein compare
Pf1N1B4_1278 -0.7 -2.2 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily compare
Pf1N1B4_5010 -0.7 -2.9 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Pf1N1B4_1996 -0.7 -3.1 NADH:ubiquinone oxidoreductase 49 kD subunit 7 compare
Pf1N1B4_2625 -0.7 -3.0 hypothetical protein compare
Pf1N1B4_2272 -0.7 -2.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_5979 -0.7 -1.9 Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) compare
Pf1N1B4_5509 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_2433 -0.7 -1.8 FIG00953108: hypothetical protein compare
Pf1N1B4_76 -0.7 -1.9 ATP binding protein compare
Pf1N1B4_2612 -0.7 -2.3 Putative transport protein compare
Pf1N1B4_4837 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_3020 -0.7 -2.8 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
Pf1N1B4_529 -0.7 -2.5 SoxH protein, homolog compare
Pf1N1B4_5089 -0.7 -2.0 Exopolysaccharide production protein ExoQ compare
Pf1N1B4_4149 -0.7 -2.5 Probable lipoprotein signal peptide compare
Pf1N1B4_4523 -0.7 -1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3665 -0.7 -1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_3895 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_2568 -0.7 -1.7 Translation elongation factor Tu compare
Pf1N1B4_4250 -0.7 -1.6 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1159 -0.7 -1.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_5005 -0.7 -1.5 LysR family transcriptional regulator STM2281 compare
Pf1N1B4_131 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_4972 -0.7 -1.8 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_3627 -0.7 -1.4 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_4661 -0.7 -1.8 Cell division inhibitor SULA compare
Pf1N1B4_535 -0.7 -2.2 FIG00953341: hypothetical protein compare
Pf1N1B4_4404 -0.7 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_3407 -0.7 -2.3 Sterol desaturase, putative compare
Pf1N1B4_526 -0.7 -2.1 Undecaprenyl pyrophosphate synthase compare
Pf1N1B4_2856 -0.7 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_4648 -0.7 -1.1 transcriptional regulator, MerR family compare
Pf1N1B4_1703 -0.7 -1.7 Methionine ABC transporter permease protein compare
Pf1N1B4_1370 -0.7 -1.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_4030 -0.7 -1.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4386 -0.7 -1.3 Inositol transport system sugar-binding protein compare
Pf1N1B4_1480 -0.7 -2.5 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) compare
Pf1N1B4_4531 -0.7 -1.6 FIG01221261: hypothetical protein compare
Pf1N1B4_58 -0.7 -3.5 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4612 -0.7 -1.5 FIG00954117: hypothetical protein compare
Pf1N1B4_4154 -0.6 -1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_4585 -0.6 -1.0 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_4275 -0.6 -1.9 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_5598 -0.6 -2.2 hypothetical protein compare
Pf1N1B4_364 -0.6 -2.2 Rhodanese domain protein UPF0176 compare
Pf1N1B4_1569 -0.6 -5.1 Twin-arginine translocation protein TatC compare
Pf1N1B4_5554 -0.6 -1.3 hypothetical protein compare
Pf1N1B4_3871 -0.6 -5.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3816 -0.6 -3.1 FIG139976: hypothetical protein compare
Pf1N1B4_4960 -0.6 -1.7 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_4828 -0.6 -1.0 hypothetical protein compare
Pf1N1B4_4385 -0.6 -1.3 Gfa-like protein compare
Pf1N1B4_4280 -0.6 -2.1 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_3467 -0.6 -1.6 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_2469 -0.6 -1.4 Glutathione S-transferase family protein compare
Pf1N1B4_2085 -0.6 -1.6 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_4215 -0.6 -3.2 Adenylate cyclase (EC 4.6.1.1) compare
Pf1N1B4_4480 -0.6 -1.4 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Pf1N1B4_3884 -0.6 -4.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare


Specific Phenotypes

For 2 genes in this experiment

For stress methylglyoxal in Pseudomonas fluorescens FW300-N1B4

For stress methylglyoxal across organisms