Experiment set3IT022 for Synechococcus elongatus PCC 7942

Compare to:

Cisplatin 0.00625 mg/ml

Group: stress
Media: BG11 + Cisplatin (0.00625 mg/ml)
Culturing: SynE_ML6, 12 well microplate, Aerobic, at 30 (C), shaken=0 rpm
Growth: about 4.7 generations
By: Kelly on 6/20/2015
Media components: 1.5 g/L Sodium nitrate, 0.04 g/L Potassium phosphate dibasic, 0.075 g/L Magnesium Sulfate Heptahydrate, 0.036 g/L Calcium chloride dihydrate, 0.006 g/L Citric Acid, 0.006 g/L Ferric ammonium citrate, 0.001 g/L EDTA (disodium salt), 0.02 g/L Sodium carbonate, Trace metal mix A5 (0.00286 g/L Boric Acid, 0.00181 g/L Manganese (II) chloride tetrahydrate, 0.000222 g/L Zinc sulfate heptahydrate, 0.00039 g/L Sodium Molybdate Dihydrate, 7.9e-05 g/L Copper (II) sulfate pentahydrate, 0.0494 mg/L Cobalt(II) nitrate hexahydrate)

Specific Phenotypes

For 6 genes in this experiment

For stress Cisplatin in Synechococcus elongatus PCC 7942

For stress Cisplatin across organisms

SEED Subsystems

Subsystem #Specific
CO2 uptake, carboxysome 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
CO2 fixation into oxaloacetate (anaplerotic) 2 2 1
cyanate degradation 3 3 1
C4 photosynthetic carbon assimilation cycle, NADP-ME type 7 4 1
C4 photosynthetic carbon assimilation cycle, NAD-ME type 11 7 1
3-hydroxypropanoate cycle 13 4 1
glyoxylate assimilation 13 3 1
C4 photosynthetic carbon assimilation cycle, PEPCK type 14 7 1
gluconeogenesis II (Methanobacterium thermoautotrophicum) 18 9 1
3-hydroxypropanoate/4-hydroxybutanate cycle 18 4 1
superpathway of the 3-hydroxypropanoate cycle 18 4 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 19 1