Experiment set3IT022 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium Chloride stress

200 most important genes:

  gene name fitness t score description  
HSERO_RS16480 -8.9 -5.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS04340 -7.8 -7.6 gamma-glutamyl ligase compare
HSERO_RS20310 -7.6 -4.9 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS08650 -7.1 -9.7 acetolactate synthase compare
HSERO_RS18990 -7.0 -4.8 pyrroline-5-carboxylate reductase compare
HSERO_RS16505 -7.0 -8.3 3-isopropylmalate dehydratase small subunit compare
HSERO_RS20320 -6.7 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS16500 -6.5 -6.4 3-isopropylmalate dehydrogenase compare
HSERO_RS00975 -6.5 -7.7 alpha,alpha-trehalose-phosphate synthase conserved
HSERO_RS04335 -6.4 -4.4 sodium:proton antiporter compare
HSERO_RS18430 -6.3 -5.7 chorismate mutase compare
HSERO_RS19595 -6.1 -13.6 glutamate synthase compare
HSERO_RS19445 -6.0 -9.2 anthranilate phosphoribosyltransferase compare
HSERO_RS20330 -6.0 -5.8 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS16515 -6.0 -12.1 isopropylmalate isomerase compare
HSERO_RS00455 -5.9 -11.3 homoserine O-acetyltransferase compare
HSERO_RS01935 -5.8 -7.1 3-dehydroquinate dehydratase compare
HSERO_RS15555 -5.8 -5.2 oxidoreductase compare
HSERO_RS19450 -5.6 -4.0 indole-3-glycerol-phosphate synthase compare
HSERO_RS20345 -5.5 -6.6 histidinol dehydrogenase compare
HSERO_RS02330 -5.5 -9.1 aspartate carbamoyltransferase compare
HSERO_RS01815 -5.4 -6.4 gamma-glutamyl kinase compare
HSERO_RS00795 -5.3 -5.1 glycerol-3-phosphate dehydrogenase compare
HSERO_RS02650 -5.1 -9.7 dihydroxy-acid dehydratase compare
HSERO_RS17185 -5.0 -7.2 2-isopropylmalate synthase compare
HSERO_RS15560 -5.0 -5.3 phosphoadenosine phosphosulfate reductase compare
HSERO_RS16470 -5.0 -3.2 tryptophan synthase subunit alpha compare
HSERO_RS20315 -4.9 -4.8 imidazole glycerol phosphate synthase compare
HSERO_RS02340 -4.8 -21.3 dihydroorotase compare
HSERO_RS15575 -4.8 -1.8 uroporphyrin-III C-methyltransferase compare
HSERO_RS19510 -4.7 -10.8 threonine dehydratase compare
HSERO_RS15570 -4.6 -6.5 sulfate adenylyltransferase compare
HSERO_RS20350 -4.4 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS20920 -4.3 -6.1 3-dehydroquinate synthase compare
HSERO_RS07160 -4.2 -4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS15565 -4.1 -6.7 sulfate adenylyltransferase subunit 2 compare
HSERO_RS19435 -3.9 -6.9 anthranilate synthase subunit I compare
HSERO_RS16440 -3.8 -3.5 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS15550 -3.7 -3.8 sulfite reductase compare
HSERO_RS08655 -3.7 -2.6 acetolactate synthase compare
HSERO_RS00800 -3.7 -5.6 hypothetical protein compare
HSERO_RS15585 -3.6 -9.6 cobalamin biosynthesis protein CbiX compare
HSERO_RS01990 -3.6 -6.5 shikimate 5-dehydrogenase compare
HSERO_RS00965 -3.5 -1.3 trehalose-phosphatase compare
HSERO_RS16475 -3.4 -2.1 tryptophan synthase subunit alpha compare
HSERO_RS07390 -3.4 -10.1 tartrate dehydrogenase compare
HSERO_RS02325 -3.3 -4.4 uracil phosphoribosyltransferase compare
HSERO_RS21475 -3.2 -3.2 recombinase XerC compare
HSERO_RS18425 -3.2 -2.6 prephenate dehydrogenase compare
HSERO_RS20985 -3.2 -2.0 serine acetyltransferase compare
HSERO_RS20325 -3.2 -3.2 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS11070 -3.0 -8.3 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS04230 -3.0 -5.6 LuxR family transcriptional regulator compare
HSERO_RS13105 -2.9 -6.9 C4-dicarboxylate ABC transporter compare
HSERO_RS09050 -2.8 -2.2 2-aminoadipate aminotransferase compare
HSERO_RS17815 -2.8 -2.4 glycosyl transferase compare
HSERO_RS08660 -2.7 -4.8 ketol-acid reductoisomerase compare
HSERO_RS10455 -2.7 -8.5 aminotransferase compare
HSERO_RS03595 -2.6 -6.0 cation transporter compare
HSERO_RS20355 -2.6 -3.3 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS10460 -2.5 -1.3 homoserine dehydrogenase compare
HSERO_RS13660 -2.5 -2.6 membrane protein compare
HSERO_RS20625 -2.4 -2.5 phenylacetate-CoA oxygenase compare
HSERO_RS02120 -2.4 -11.9 phosphomethylpyrimidine synthase ThiC compare
HSERO_RS00970 -2.4 -4.1 glucoamylase compare
HSERO_RS04325 -2.3 -7.1 helicase I compare
HSERO_RS15680 -2.3 -7.8 chemotaxis protein CheY compare
HSERO_RS19590 -2.3 -1.2 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS16885 -2.3 -0.8 magnesium-transporting ATPase compare
HSERO_RS00835 -2.2 -4.7 molybdopterin biosynthesis protein MoeB compare
HSERO_RS02135 -2.2 -5.1 phosphomethylpyrimidine kinase compare
HSERO_RS02125 -2.2 -8.4 thiamine biosynthesis protein ThiS compare
HSERO_RS07400 -2.2 -3.3 LysR family transcriptional regulator compare
HSERO_RS04235 -2.1 -9.1 C4-dicarboxylate ABC transporter compare
HSERO_RS19630 -1.9 -0.7 AMP nucleosidase compare
HSERO_RS02130 -1.9 -6.3 thiazole synthase compare
HSERO_RS17110 -1.9 -3.0 ribonuclease H compare
HSERO_RS23945 -1.9 -3.2 cobyric acid synthase CobQ compare
HSERO_RS02140 -1.8 -1.3 thiamine-phosphate synthase compare
HSERO_RS16075 -1.8 -6.1 coproporphyrinogen III oxidase compare
HSERO_RS17980 -1.8 -2.6 GTP-binding protein compare
HSERO_RS10020 -1.7 -2.6 flippase compare
HSERO_RS05910 -1.7 -2.3 phosphoribosylglycinamide formyltransferase compare
HSERO_RS00430 -1.7 -3.0 glutamate--cysteine ligase compare
HSERO_RS15835 -1.6 -1.6 aspartate aminotransferase compare
HSERO_RS17810 -1.6 -0.5 glycosyl transferase compare
HSERO_RS16745 -1.6 -6.4 gluconate 2-dehydrogenase compare
HSERO_RS09795 -1.6 -6.7 carbon starvation protein A compare
HSERO_RS05515 -1.5 -0.8 glucose-6-phosphate isomerase compare
HSERO_RS06015 -1.5 -1.8 hisitidine kinase compare
HSERO_RS21450 -1.5 -2.1 lipid A biosynthesis acyltransferase compare
HSERO_RS09660 -1.5 -2.5 ribonuclease III compare
HSERO_RS15070 -1.5 -1.3 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS16835 -1.5 -5.5 phosphatidylglycerophosphatase compare
HSERO_RS11065 -1.5 -3.1 quinolinate synthetase compare
HSERO_RS16740 -1.5 -7.1 GMC family oxidoreductase compare
HSERO_RS15545 -1.5 -4.5 membrane protein compare
HSERO_RS10400 -1.4 -7.2 inorganic phosphate transporter compare
HSERO_RS09775 -1.4 -2.2 cobalamin synthase compare
HSERO_RS18010 -1.4 -1.9 pseudouridine synthase compare
HSERO_RS13655 -1.4 -3.5 hypothetical protein compare
HSERO_RS10815 -1.4 -4.4 chromosome segregation protein SMC compare
HSERO_RS15685 -1.3 -6.1 histidine kinase compare
HSERO_RS04330 -1.3 -3.9 ATP-dependent exonuclease compare
HSERO_RS08605 -1.3 -1.8 Hsp33 chaperonin compare
HSERO_RS13230 -1.3 -1.6 cobyric acid synthase compare
HSERO_RS13650 -1.3 -3.9 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS09145 -1.3 -2.8 DNA topoisomerase IV subunit A compare
HSERO_RS00815 -1.2 -1.4 sulfurtransferase compare
HSERO_RS18365 -1.2 -5.9 hypothetical protein compare
HSERO_RS16200 -1.2 -2.5 hypothetical protein compare
HSERO_RS08115 -1.2 -1.3 acyl-CoA-binding protein compare
HSERO_RS09800 -1.2 -2.6 hypothetical protein compare
HSERO_RS16660 -1.1 -4.7 NAD-dependent dehydratase compare
HSERO_RS16535 -1.1 -3.8 hypothetical protein compare
HSERO_RS08640 -1.1 -1.5 hypothetical protein compare
HSERO_RS02205 -1.1 -1.4 phosphatase compare
HSERO_RS13260 -1.1 -2.0 cobinamide adenolsyltransferase compare
HSERO_RS10865 -1.1 -3.7 PII uridylyl-transferase compare
HSERO_RS15040 -1.1 -4.0 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS21550 -1.1 -7.5 phosphoenolpyruvate carboxykinase compare
HSERO_RS09155 -1.1 -5.1 DNA topoisomerase IV subunit B compare
HSERO_RS09220 -1.1 -2.7 hypothetical protein compare
HSERO_RS23185 -1.1 -0.7 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS12735 -1.1 -1.7 GNAT family acetyltransferase compare
HSERO_RS13645 -1.1 -3.7 membrane protein compare
HSERO_RS20875 -1.0 -6.1 hypothetical protein compare
HSERO_RS03085 -1.0 -1.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS22990 -1.0 -4.2 transcriptional regulator compare
HSERO_RS18455 -1.0 -2.4 phosphoglycolate phosphatase compare
HSERO_RS08405 -1.0 -0.5 membrane protein compare
HSERO_RS20235 -1.0 -1.4 cytochrome C compare
HSERO_RS16735 -1.0 -3.8 alcohol dehydrogenase compare
HSERO_RS13965 -1.0 -1.2 single-stranded DNA exonuclease compare
HSERO_RS07770 -1.0 -4.7 acetyl-CoA synthetase compare
HSERO_RS09650 -1.0 -1.6 elongation factor 4 compare
HSERO_RS20365 -1.0 -1.8 metal-dependent hydrolase compare
HSERO_RS09235 -1.0 -1.0 MarR family transcriptional regulator compare
HSERO_RS06165 -1.0 -4.9 ATP-dependent DNA helicase RecG compare
HSERO_RS20250 -0.9 -1.3 large conductance mechanosensitive channel protein MscL compare
HSERO_RS03450 -0.9 -1.4 energy transducer protein TonB compare
HSERO_RS05440 -0.9 -1.0 hypothetical protein compare
HSERO_RS22045 -0.9 -1.7 UDP-glucose 4-epimerase compare
HSERO_RS13320 -0.9 -2.3 membrane protein compare
HSERO_RS13305 -0.9 -3.5 magnesium chelatase compare
HSERO_RS13265 -0.9 -1.8 G3E family GTPase compare
HSERO_RS02090 -0.9 -1.4 Holliday junction DNA helicase RuvA compare
HSERO_RS16750 -0.9 -4.2 DeoR family transcriptional regulator compare
HSERO_RS09790 -0.9 -4.8 sensor histidine kinase compare
HSERO_RS10960 -0.9 -1.4 PEP synthetase regulatory protein compare
HSERO_RS06175 -0.9 -2.3 queuine tRNA-ribosyltransferase compare
HSERO_RS11960 -0.9 -3.9 hypothetical protein compare
HSERO_RS02260 -0.9 -3.2 DNA polymerase I compare
HSERO_RS21740 -0.9 -4.2 methionine synthase compare
HSERO_RS01870 -0.9 -3.8 ABC transporter permease compare
HSERO_RS10395 -0.9 -1.0 phosphate transport regulator compare
HSERO_RS13275 -0.9 -0.8 cobalamin biosynthesis protein CbiG compare
HSERO_RS17880 -0.8 -3.4 membrane protein compare
HSERO_RS13310 -0.8 -5.1 cobaltochelatase compare
HSERO_RS07970 -0.8 -1.1 formyltetrahydrofolate deformylase compare
HSERO_RS14960 -0.8 -1.9 Fis family transcriptional regulator compare
HSERO_RS13770 -0.8 -2.1 polysaccharide deacetylase compare
HSERO_RS11085 -0.8 -2.8 L-aspartate oxidase compare
HSERO_RS11090 -0.8 -5.6 phosphoribosylglycinamide formyltransferase compare
HSERO_RS13560 -0.8 -3.0 transcriptional regulator compare
HSERO_RS04950 -0.8 -3.1 deacetylase compare
HSERO_RS03445 -0.8 -2.0 biopolymer transport transmembrane protein compare
HSERO_RS00080 -0.8 -3.7 histidine kinase compare
HSERO_RS09785 -0.8 -3.9 LuxR family transcriptional regulator compare
HSERO_RS13255 -0.8 -2.6 cobyrinic acid a,c-diamide synthase compare
HSERO_RS02470 -0.8 -3.5 tRNA (guanine-N7)-methyltransferase compare
HSERO_RS20820 -0.8 -0.7 ABC transporter ATP-binding protein compare
HSERO_RS09455 -0.8 -1.6 NAD synthetase compare
HSERO_RS09770 -0.8 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS10945 -0.8 -1.0 ribonuclease HII compare
HSERO_RS19155 -0.8 -2.4 LysR family transcriptional regulator compare
HSERO_RS06025 -0.8 -5.5 histidine kinase compare
HSERO_RS13295 -0.8 -2.2 membrane protein compare
HSERO_RS22025 -0.8 -1.4 aromatic amino acid aminotransferase compare
HSERO_RS03500 -0.8 -1.9 uracil phosphoribosyltransferase compare
HSERO_RS19970 -0.8 -3.0 branched-chain amino acid ABC transporter compare
HSERO_RS13270 -0.8 -3.8 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS16035 -0.8 -1.7 cytochrome C oxidase compare
HSERO_RS20260 -0.8 -1.0 2-alkenal reductase compare
HSERO_RS21345 -0.8 -1.8 cell division inhibitor MinD compare
HSERO_RS02145 -0.8 -1.0 ferritin compare
HSERO_RS13315 -0.7 -0.7 ferredoxin compare
HSERO_RS16840 -0.7 -3.6 competence damage-inducible protein A compare
HSERO_RS09760 -0.7 -2.6 hypothetical protein compare
HSERO_RS21005 -0.7 -4.4 asparagine synthase compare
HSERO_RS17900 -0.7 -1.4 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS07935 -0.7 -4.0 serine acetyltransferase compare
HSERO_RS13240 -0.7 -2.0 cobalamin biosynthesis protein CobD compare
HSERO_RS05980 -0.7 -1.0 aldehyde dehydrogenase compare
HSERO_RS14930 -0.7 -1.4 aldolase compare
HSERO_RS20265 -0.7 -0.9 hypothetical protein compare
HSERO_RS11885 -0.7 -1.2 hypothetical protein compare
HSERO_RS22440 -0.7 -1.5 hypothetical protein compare
HSERO_RS05815 -0.7 -1.4 osmotically inducible protein C compare
HSERO_RS21340 -0.7 -2.4 septum formation inhibitor protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Sodium Chloride in Herbaspirillum seropedicae SmR1

For stress Sodium Chloride across organisms