Experiment set3IT022 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 4; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -5.9 -7.0 NUDIX domain-containing protein compare
ABZR87_RS08630 -5.7 -5.5 dihydroorotase compare
ABZR87_RS08695 -5.1 -19.5 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS05100 -4.5 -4.3 RNA polymerase-binding protein DksA compare
ABZR87_RS05130 -4.3 -1.8 CsbD family protein compare
ABZR87_RS05305 -4.2 -12.5 TetR family transcriptional regulator compare
ABZR87_RS04975 -4.0 -2.8 peptide deformylase compare
ABZR87_RS00435 -3.9 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13705 -3.8 -2.6 integration host factor subunit alpha compare
ABZR87_RS01255 -3.8 -12.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS06400 -3.7 -9.0 response regulator transcription factor compare
ABZR87_RS08645 -3.7 -1.5 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS09515 -3.6 -2.5 cysteine synthase CysM compare
ABZR87_RS09895 -3.5 -2.4 DUF1841 family protein compare
ABZR87_RS08990 -3.5 -8.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS08970 -3.5 -8.1 protein TolQ compare
ABZR87_RS08795 -3.5 -4.1 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS11170 -3.5 -1.4 FixH family protein compare
ABZR87_RS02145 -3.3 -3.3 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS14115 -3.3 -2.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS12785 -3.1 -3.7 endopeptidase La compare
ABZR87_RS00795 -3.1 -2.1 site-specific tyrosine recombinase XerD compare
ABZR87_RS02850 -3.1 -2.1 elongation factor Tu compare
ABZR87_RS08985 -3.0 -11.9 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS08980 -3.0 -4.6 cell envelope integrity protein TolA compare
ABZR87_RS07035 -3.0 -6.1 RNase adapter RapZ compare
ABZR87_RS10980 -2.9 -1.6 tRNA-Leu compare
ABZR87_RS07355 -2.9 -6.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS21950 -2.9 -7.5 hypothetical protein compare
ABZR87_RS13300 -2.8 -5.5 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS05645 -2.8 -4.7 SDR family oxidoreductase compare
ABZR87_RS14605 -2.8 -12.2 aconitate hydratase AcnA compare
ABZR87_RS04865 -2.8 -4.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS07005 -2.7 -2.6 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS16185 -2.6 -2.6 dCTP deaminase compare
ABZR87_RS08700 -2.6 -6.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06745 -2.6 -5.2 S41 family peptidase compare
ABZR87_RS02640 -2.5 -13.1 diaminopimelate decarboxylase compare
ABZR87_RS06385 -2.5 -7.8 CHASE3 domain-containing protein compare
ABZR87_RS12790 -2.5 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS07510 -2.5 -4.6 LysR family transcriptional regulator compare
ABZR87_RS02440 -2.5 -8.7 twin-arginine translocase subunit TatC compare
ABZR87_RS04940 -2.4 -5.9 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02385 -2.4 -3.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS21285 -2.4 -2.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS00340 -2.4 -2.8 50S ribosomal protein L33 compare
ABZR87_RS10120 -2.4 -1.6 YceD family protein compare
ABZR87_RS15715 -2.3 -6.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS05065 -2.3 -3.2 tyrosine recombinase XerC compare
ABZR87_RS03420 -2.3 -1.3 type II secretion system minor pseudopilin GspI compare
ABZR87_RS02590 -2.3 -6.9 3-dehydroquinate synthase compare
ABZR87_RS02445 -2.3 -3.7 Sec-independent protein translocase protein TatB compare
ABZR87_RS06350 -2.3 -7.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS01615 -2.3 -1.2 RNB domain-containing ribonuclease compare
ABZR87_RS09615 -2.3 -1.5 50S ribosomal protein L19 compare
ABZR87_RS09935 -2.3 -2.2 amino acid aminotransferase compare
ABZR87_RS11330 -2.2 -2.4 transcriptional repressor LexA compare
ABZR87_RS11015 -2.2 -4.7 amino-acid N-acetyltransferase compare
ABZR87_RS08625 -2.2 -1.5 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS01245 -2.2 -2.1 Dps family protein compare
ABZR87_RS16170 -2.1 -3.2 argininosuccinate lyase compare
ABZR87_RS22920 -2.1 -4.3 phosphogluconate dehydratase compare
ABZR87_RS07730 -2.1 -2.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS02375 -2.1 -7.8 cytochrome c1 compare
ABZR87_RS12665 -2.1 -1.7 ABC transporter ATP-binding protein compare
ABZR87_RS10195 -2.0 -3.1 signal peptidase I compare
ABZR87_RS02160 -2.0 -5.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00875 -2.0 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS07055 -2.0 -8.0 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS17235 -2.0 -3.7 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS01885 -1.9 -3.2 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS14190 -1.9 -8.5 DUF2589 domain-containing protein compare
ABZR87_RS12965 -1.9 -2.2 tail protein X compare
ABZR87_RS02380 -1.9 -7.7 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS07635 -1.9 -1.3 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS10175 -1.8 -4.9 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS17145 -1.8 -10.2 AMP nucleosidase compare
ABZR87_RS02525 -1.8 -2.4 ABC transporter ATP-binding protein compare
ABZR87_RS14500 -1.8 -8.8 tryptophan synthase subunit beta compare
ABZR87_RS16960 -1.8 -3.6 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS02545 -1.7 -5.3 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS06705 -1.7 -8.2 glutamate--cysteine ligase compare
ABZR87_RS13790 -1.7 -6.0 chorismate synthase compare
ABZR87_RS09000 -1.7 -5.6 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS07380 -1.6 -9.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS04105 -1.6 -2.9 ATP synthase subunit I compare
ABZR87_RS01745 -1.6 -2.6 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS06845 -1.6 -6.9 heme o synthase compare
ABZR87_RS11790 -1.6 -1.5 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS01035 -1.6 -3.3 histidine utilization repressor compare
ABZR87_RS12795 -1.6 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS12150 -1.6 -2.3 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS09465 -1.6 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS07625 -1.6 -1.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS10190 -1.6 -6.1 translation elongation factor 4 compare
ABZR87_RS10910 -1.6 -2.0 RodZ family helix-turn-helix domain-containing protein compare
ABZR87_RS18695 -1.6 -5.5 sugar-binding transcriptional regulator compare
ABZR87_RS14665 -1.6 -1.4 histidine phosphatase family protein compare
ABZR87_RS08660 -1.6 -3.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS00835 -1.5 -1.1 argininosuccinate synthase compare
ABZR87_RS04880 -1.5 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS02655 -1.5 -6.7 anti-sigma factor compare
ABZR87_RS15225 -1.5 -3.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS12955 -1.5 -3.6 terminase endonuclease subunit compare
ABZR87_RS21170 -1.5 -3.0 ABC transporter ATP-binding protein compare
ABZR87_RS07760 -1.5 -2.1 HlyC/CorC family transporter compare
ABZR87_RS06645 -1.5 -1.0 TlpA disulfide reductase family protein compare
ABZR87_RS17650 -1.5 -4.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14965 -1.5 -3.4 DUF3619 family protein compare
ABZR87_RS02595 -1.5 -6.6 shikimate kinase compare
ABZR87_RS11815 -1.4 -6.5 [protein-PII] uridylyltransferase compare
ABZR87_RS18170 -1.4 -1.4 hypothetical protein compare
ABZR87_RS02550 -1.4 -2.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS15705 -1.4 -3.1 UvrD-helicase domain-containing protein compare
ABZR87_RS01270 -1.4 -5.1 ATP-dependent DNA helicase RecG compare
ABZR87_RS16860 -1.4 -1.5 response regulator compare
ABZR87_RS01980 -1.4 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS12950 -1.4 -4.3 phage major capsid protein, P2 family compare
ABZR87_RS02535 -1.4 -3.8 phospholipid-binding protein MlaC compare
ABZR87_RS14970 -1.4 -2.2 DUF3106 domain-containing protein compare
ABZR87_RS02555 -1.4 -4.8 ABC transporter ATP-binding protein compare
ABZR87_RS05590 -1.3 -1.3 orotate phosphoribosyltransferase compare
ABZR87_RS13415 -1.3 -3.9 IclR family transcriptional regulator compare
ABZR87_RS07050 -1.3 -1.4 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS10170 -1.3 -3.1 RseA family anti-sigma factor compare
ABZR87_RS02075 -1.3 -1.1 23S ribosomal RNA compare
ABZR87_RS11435 -1.3 -2.2 Mth938-like domain-containing protein compare
ABZR87_RS14510 -1.3 -2.7 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS10785 -1.3 -2.7 exodeoxyribonuclease V subunit beta compare
ABZR87_RS08720 -1.3 -7.5 HAD family hydrolase compare
ABZR87_RS14535 -1.3 -2.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS01275 -1.3 -2.8 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS16845 -1.3 -0.9 hypothetical protein compare
ABZR87_RS02540 -1.3 -4.6 VacJ family lipoprotein compare
ABZR87_RS07620 -1.3 -2.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS02155 -1.3 -4.3 anthranilate phosphoribosyltransferase compare
ABZR87_RS13475 -1.3 -4.9 PAS domain S-box protein compare
ABZR87_RS15665 -1.2 -4.2 ZIP family metal transporter compare
ABZR87_RS10610 -1.2 -0.8 inositol monophosphatase family protein compare
ABZR87_RS08670 -1.2 -5.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS04270 -1.2 -2.9 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS04995 -1.2 -1.6 DNA topoisomerase III compare
ABZR87_RS14375 -1.2 -2.6 fumarate hydratase compare
ABZR87_RS01675 -1.2 -1.4 carbohydrate kinase family protein compare
ABZR87_RS00085 -1.2 -1.8 ABC transporter ATP-binding protein compare
ABZR87_RS04340 -1.2 -5.1 septum site-determining protein MinD compare
ABZR87_RS02325 -1.2 -2.9 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS02220 -1.2 -5.0 redox-regulated ATPase YchF compare
ABZR87_RS14080 -1.2 -3.5 phosphate signaling complex protein PhoU compare
ABZR87_RS03565 -1.2 -4.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS20555 -1.2 -3.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS13285 -1.1 -5.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS16080 -1.1 -1.6 P-II family nitrogen regulator compare
ABZR87_RS18145 -1.1 -3.0 lytic transglycosylase domain-containing protein compare
ABZR87_RS11245 -1.1 -3.0 translational GTPase TypA compare
ABZR87_RS06365 -1.1 -2.4 DUF1840 domain-containing protein compare
ABZR87_RS07360 -1.1 -4.9 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS10085 -1.1 -1.1 Rne/Rng family ribonuclease compare
ABZR87_RS12145 -1.1 -2.1 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS20495 -1.1 -1.3 hypothetical protein compare
ABZR87_RS22370 -1.1 -1.4 four-helix bundle copper-binding protein compare
ABZR87_RS06455 -1.1 -1.5 IclR family transcriptional regulator compare
ABZR87_RS12970 -1.1 -1.4 putative holin compare
ABZR87_RS04265 -1.1 -4.6 phenylalanine 4-monooxygenase compare
ABZR87_RS16055 -1.1 -3.6 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS02035 -1.1 -3.5 substrate-binding domain-containing protein compare
ABZR87_RS17910 -1.1 -5.5 IclR family transcriptional regulator compare
ABZR87_RS04235 -1.1 -4.6 heavy metal translocating P-type ATPase compare
ABZR87_RS07450 -1.1 -2.3 dihydroneopterin triphosphate diphosphatase compare
ABZR87_RS08620 -1.1 -2.5 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
ABZR87_RS08715 -1.1 -8.0 ATP-grasp domain-containing protein compare
ABZR87_RS21940 -1.1 -0.9 hypothetical protein compare
ABZR87_RS13290 -1.1 -2.5 3-ketoacyl-ACP reductase compare
ABZR87_RS16125 -1.0 -3.4 heme biosynthesis protein HemY compare
ABZR87_RS18420 -1.0 -2.6 hypothetical protein compare
ABZR87_RS21955 -1.0 -3.4 hypothetical protein compare
ABZR87_RS03915 -1.0 -5.7 UvrD-helicase domain-containing protein compare
ABZR87_RS14505 -1.0 -2.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS04125 -1.0 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS13540 -1.0 -1.9 DUF1488 family protein compare
ABZR87_RS01685 -1.0 -4.3 histone H1-like DNA-binding protein compare
ABZR87_RS11160 -1.0 -3.8 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR87_RS14540 -1.0 -3.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS01800 -1.0 -3.1 RNA pyrophosphohydrolase compare
ABZR87_RS12945 -1.0 -2.1 GPO family capsid scaffolding protein compare
ABZR87_RS19975 -1.0 -2.3 thymidine phosphorylase family protein compare
ABZR87_RS11755 -1.0 -1.2 arsenate reductase compare
ABZR87_RS03435 -1.0 -3.5 type II secretion system protein GspL compare
ABZR87_RS11460 -1.0 -2.9 gephyrin-like molybdotransferase Glp compare
ABZR87_RS15605 -1.0 -2.0 hypothetical protein compare
ABZR87_RS08710 -1.0 -6.9 sugar transferase compare
ABZR87_RS15065 -1.0 -2.4 TMEM165/GDT1 family protein compare
ABZR87_RS10400 -1.0 -1.3 hypothetical protein compare
ABZR87_RS16070 -1.0 -2.3 Smr/MutS family protein compare
ABZR87_RS18560 -1.0 -2.4 NmrA family NAD(P)-binding protein compare
ABZR87_RS22520 -1.0 -1.7 ABATE domain-containing protein compare
ABZR87_RS17695 -1.0 -1.5 helix-turn-helix transcriptional regulator compare
ABZR87_RS14490 -1.0 -4.2 tryptophan synthase subunit alpha compare
ABZR87_RS08650 -1.0 -4.3 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS12975 -1.0 -2.0 phage holin family protein compare


Specific Phenotypes

For 1 genes in this experiment