Experiment set3IT021 for Herbaspirillum seropedicae SmR1

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
HSERO_RS16480 -8.8 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS01935 -8.1 -4.4 3-dehydroquinate dehydratase compare
HSERO_RS08650 -8.0 -7.8 acetolactate synthase compare
HSERO_RS20310 -7.4 -5.1 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS16505 -7.4 -7.2 3-isopropylmalate dehydratase small subunit compare
HSERO_RS02340 -7.3 -14.0 dihydroorotase compare
HSERO_RS18430 -7.1 -6.9 chorismate mutase compare
HSERO_RS20345 -7.1 -4.9 histidinol dehydrogenase compare
HSERO_RS20350 -7.0 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS16500 -7.0 -4.8 3-isopropylmalate dehydrogenase compare
HSERO_RS18990 -6.9 -4.7 pyrroline-5-carboxylate reductase compare
HSERO_RS20330 -6.5 -4.5 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS20320 -6.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS04340 -6.3 -6.9 gamma-glutamyl ligase compare
HSERO_RS15555 -6.3 -5.9 oxidoreductase compare
HSERO_RS04335 -6.2 -4.3 sodium:proton antiporter compare
HSERO_RS16515 -6.2 -7.8 isopropylmalate isomerase compare
HSERO_RS17185 -6.0 -9.4 2-isopropylmalate synthase compare
HSERO_RS15570 -5.9 -6.3 sulfate adenylyltransferase compare
HSERO_RS15550 -5.8 -4.0 sulfite reductase compare
HSERO_RS00455 -5.8 -10.4 homoserine O-acetyltransferase compare
HSERO_RS00795 -5.7 -4.0 glycerol-3-phosphate dehydrogenase compare
HSERO_RS19595 -5.7 -12.3 glutamate synthase compare
HSERO_RS19445 -5.7 -9.5 anthranilate phosphoribosyltransferase compare
HSERO_RS16470 -5.7 -5.2 tryptophan synthase subunit alpha compare
HSERO_RS07160 -5.6 -5.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS20315 -5.5 -3.8 imidazole glycerol phosphate synthase compare
HSERO_RS19450 -5.4 -4.1 indole-3-glycerol-phosphate synthase compare
HSERO_RS01815 -5.4 -5.2 gamma-glutamyl kinase compare
HSERO_RS02650 -5.4 -8.2 dihydroxy-acid dehydratase compare
HSERO_RS19510 -5.2 -9.9 threonine dehydratase compare
HSERO_RS15565 -5.1 -5.8 sulfate adenylyltransferase subunit 2 compare
HSERO_RS02330 -5.0 -5.8 aspartate carbamoyltransferase compare
HSERO_RS15575 -4.8 -2.0 uroporphyrin-III C-methyltransferase compare
HSERO_RS19435 -4.5 -5.4 anthranilate synthase subunit I compare
HSERO_RS16475 -4.4 -2.5 tryptophan synthase subunit alpha compare
HSERO_RS20920 -4.4 -5.4 3-dehydroquinate synthase compare
HSERO_RS08660 -4.4 -7.1 ketol-acid reductoisomerase compare
HSERO_RS16440 -4.2 -4.3 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS15560 -4.1 -6.4 phosphoadenosine phosphosulfate reductase compare
HSERO_RS18425 -4.1 -3.6 prephenate dehydrogenase compare
HSERO_RS02125 -3.7 -8.8 thiamine biosynthesis protein ThiS compare
HSERO_RS11070 -3.6 -5.8 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS00800 -3.5 -4.3 hypothetical protein compare
HSERO_RS02325 -3.4 -4.4 uracil phosphoribosyltransferase compare
HSERO_RS02130 -3.4 -6.0 thiazole synthase compare
HSERO_RS15585 -3.3 -10.1 cobalamin biosynthesis protein CbiX compare
HSERO_RS07755 -3.3 -7.4 glutamate racemase compare
HSERO_RS10455 -3.2 -9.8 aminotransferase compare
HSERO_RS13280 -3.2 -3.6 precorrin-4 C11-methyltransferase compare
HSERO_RS01990 -3.0 -6.3 shikimate 5-dehydrogenase compare
HSERO_RS07400 -3.0 -6.2 LysR family transcriptional regulator compare
HSERO_RS02120 -2.9 -12.4 phosphomethylpyrimidine synthase ThiC compare
HSERO_RS20325 -2.9 -4.5 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS05515 -2.8 -1.1 glucose-6-phosphate isomerase compare
HSERO_RS10460 -2.7 -1.5 homoserine dehydrogenase compare
HSERO_RS07390 -2.7 -8.8 tartrate dehydrogenase compare
HSERO_RS17815 -2.6 -2.3 glycosyl transferase compare
HSERO_RS04325 -2.6 -6.9 helicase I compare
HSERO_RS09050 -2.5 -3.2 2-aminoadipate aminotransferase compare
HSERO_RS13270 -2.4 -8.0 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS13255 -2.4 -4.0 cobyrinic acid a,c-diamide synthase compare
HSERO_RS15680 -2.3 -10.0 chemotaxis protein CheY compare
HSERO_RS13295 -2.3 -3.6 membrane protein compare
HSERO_RS13260 -2.2 -5.9 cobinamide adenolsyltransferase compare
HSERO_RS16885 -2.2 -0.9 magnesium-transporting ATPase compare
HSERO_RS08655 -2.2 -1.4 acetolactate synthase compare
HSERO_RS09775 -2.2 -2.8 cobalamin synthase compare
HSERO_RS19590 -2.1 -1.2 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS21740 -2.1 -8.1 methionine synthase compare
HSERO_RS21475 -2.1 -2.8 recombinase XerC compare
HSERO_RS13275 -2.1 -2.8 cobalamin biosynthesis protein CbiG compare
HSERO_RS13240 -2.1 -4.5 cobalamin biosynthesis protein CobD compare
HSERO_RS02205 -2.0 -2.1 phosphatase compare
HSERO_RS13305 -2.0 -5.4 magnesium chelatase compare
HSERO_RS02135 -2.0 -6.0 phosphomethylpyrimidine kinase compare
HSERO_RS13285 -2.0 -2.4 precorrin-2 C20-methyltransferase compare
HSERO_RS10805 -1.9 -1.8 succinyldiaminopimelate aminotransferase compare
HSERO_RS00835 -1.9 -4.1 molybdopterin biosynthesis protein MoeB compare
HSERO_RS13310 -1.9 -9.6 cobaltochelatase compare
HSERO_RS20355 -1.9 -2.8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS10395 -1.9 -2.5 phosphate transport regulator compare
HSERO_RS11065 -1.9 -2.6 quinolinate synthetase compare
HSERO_RS13660 -1.9 -2.6 membrane protein compare
HSERO_RS04230 -1.8 -3.0 LuxR family transcriptional regulator compare
HSERO_RS09770 -1.8 -4.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS05910 -1.8 -2.4 phosphoribosylglycinamide formyltransferase compare
HSERO_RS20985 -1.7 -1.6 serine acetyltransferase compare
HSERO_RS04330 -1.7 -5.0 ATP-dependent exonuclease compare
HSERO_RS13230 -1.5 -2.0 cobyric acid synthase compare
HSERO_RS15070 -1.5 -1.4 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS17810 -1.5 -0.6 glycosyl transferase compare
HSERO_RS08075 -1.5 -1.7 ferredoxin compare
HSERO_RS03085 -1.5 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS17110 -1.4 -2.5 ribonuclease H compare
HSERO_RS21375 -1.4 -1.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS07970 -1.3 -1.7 formyltetrahydrofolate deformylase compare
HSERO_RS00430 -1.3 -3.7 glutamate--cysteine ligase compare
HSERO_RS15685 -1.3 -6.4 histidine kinase compare
HSERO_RS02275 -1.2 -1.0 hypothetical protein compare
HSERO_RS07935 -1.2 -5.0 serine acetyltransferase compare
HSERO_RS10865 -1.2 -4.1 PII uridylyl-transferase compare
HSERO_RS13880 -1.2 -1.5 hypothetical protein compare
HSERO_RS15835 -1.1 -1.3 aspartate aminotransferase compare
HSERO_RS02160 -1.1 -1.3 DNA-dependent helicase compare
HSERO_RS13265 -1.1 -2.0 G3E family GTPase compare
HSERO_RS00965 -1.1 -0.7 trehalose-phosphatase compare
HSERO_RS03875 -1.1 -1.2 hypothetical protein compare
HSERO_RS18875 -1.1 -1.5 ATPase compare
HSERO_RS23945 -1.1 -1.8 cobyric acid synthase CobQ compare
HSERO_RS07600 -1.1 -3.1 threonine-phosphate decarboxylase compare
HSERO_RS18010 -1.0 -1.7 pseudouridine synthase compare
HSERO_RS03235 -1.0 -1.3 hypothetical protein compare
HSERO_RS10020 -1.0 -1.8 flippase compare
HSERO_RS18455 -1.0 -2.4 phosphoglycolate phosphatase compare
HSERO_RS03270 -1.0 -3.1 protein RecA compare
HSERO_RS04025 -1.0 -2.6 hypothetical protein compare
HSERO_RS21640 -1.0 -1.4 recombinase RdgC compare
HSERO_RS10815 -1.0 -3.2 chromosome segregation protein SMC compare
HSERO_RS00815 -1.0 -1.1 sulfurtransferase compare
HSERO_RS18675 -1.0 -2.2 hypothetical protein compare
HSERO_RS09660 -1.0 -1.4 ribonuclease III compare
HSERO_RS16660 -1.0 -4.6 NAD-dependent dehydratase compare
HSERO_RS00410 -1.0 -2.0 phosphoheptose isomerase compare
HSERO_RS01455 -1.0 -1.1 hypothetical protein compare
HSERO_RS08640 -1.0 -0.8 hypothetical protein compare
HSERO_RS00220 -1.0 -0.9 hypothetical protein compare
HSERO_RS04265 -0.9 -1.4 tyrosine recombinase XerD compare
HSERO_RS16835 -0.9 -3.6 phosphatidylglycerophosphatase compare
HSERO_RS08115 -0.9 -1.2 acyl-CoA-binding protein compare
HSERO_RS09145 -0.9 -3.7 DNA topoisomerase IV subunit A compare
HSERO_RS06915 -0.9 -1.4 hypothetical protein compare
HSERO_RS22025 -0.9 -2.4 aromatic amino acid aminotransferase compare
HSERO_RS10960 -0.9 -1.8 PEP synthetase regulatory protein compare
HSERO_RS02140 -0.9 -0.8 thiamine-phosphate synthase compare
HSERO_RS20240 -0.9 -1.1 cytochrome B compare
HSERO_RS13655 -0.9 -2.6 hypothetical protein compare
HSERO_RS20135 -0.9 -2.0 type VI secretion protein compare
HSERO_RS12920 -0.9 -1.4 trigger factor compare
HSERO_RS13320 -0.9 -2.7 membrane protein compare
HSERO_RS16450 -0.9 -1.3 colicin V production protein compare
HSERO_RS09990 -0.9 -1.3 glycosyl transferase compare
HSERO_RS20365 -0.8 -2.5 metal-dependent hydrolase compare
HSERO_RS03145 -0.8 -5.1 poly(A) polymerase compare
HSERO_RS13105 -0.8 -4.5 C4-dicarboxylate ABC transporter compare
HSERO_RS03060 -0.8 -1.9 DNA repair protein compare
HSERO_RS09155 -0.8 -4.3 DNA topoisomerase IV subunit B compare
HSERO_RS06165 -0.8 -4.0 ATP-dependent DNA helicase RecG compare
HSERO_RS02215 -0.8 -0.4 D-arabinitol 4-dehydrogenase compare
HSERO_RS23800 -0.8 -1.6 hypothetical protein compare
HSERO_RS06760 -0.8 -1.7 hypothetical protein compare
HSERO_RS21480 -0.8 -1.1 transcriptional regulator compare
HSERO_RS09455 -0.8 -2.3 NAD synthetase compare
HSERO_RS17900 -0.8 -1.5 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS23640 -0.8 -1.5 Ni/Fe hydrogenase compare
HSERO_RS16485 -0.8 -3.7 tRNA pseudouridine synthase A compare
HSERO_RS03450 -0.8 -1.2 energy transducer protein TonB compare
HSERO_RS13650 -0.8 -2.8 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS14935 -0.8 -1.5 hypothetical protein compare
HSERO_RS06655 -0.8 -1.3 hypothetical protein compare
HSERO_RS04270 -0.8 -2.1 membrane protein compare
HSERO_RS17880 -0.8 -2.1 membrane protein compare
HSERO_RS18685 -0.8 -1.0 hypothetical protein compare
HSERO_RS17980 -0.8 -1.3 GTP-binding protein compare
HSERO_RS03595 -0.8 -2.1 cation transporter compare
HSERO_RS08285 -0.8 -2.0 amino acid ABC transporter ATP-binding protein compare
HSERO_RS21345 -0.7 -2.9 cell division inhibitor MinD compare
HSERO_RS14840 -0.7 -2.9 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS12960 -0.7 -1.9 hypothetical protein compare
HSERO_RS14765 -0.7 -1.5 membrane protein compare
HSERO_RS04235 -0.7 -4.1 C4-dicarboxylate ABC transporter compare
HSERO_RS04190 -0.7 -2.7 DNA mismatch repair protein compare
HSERO_RS18610 -0.7 -1.8 phosphotransferase compare
HSERO_RS23670 -0.7 -2.6 chemotaxis protein CheY compare
HSERO_RS01510 -0.7 -2.7 membrane protein compare
HSERO_RS12300 -0.7 -1.7 hypothetical protein compare
HSERO_RS10065 -0.7 -3.8 hypothetical protein compare
HSERO_RS08515 -0.7 -1.7 diguanylate cyclase compare
HSERO_RS16535 -0.7 -2.8 hypothetical protein compare
HSERO_RS14760 -0.7 -2.5 membrane protein compare
HSERO_RS13965 -0.7 -0.7 single-stranded DNA exonuclease compare
HSERO_RS05620 -0.7 -1.0 dehydratase compare
HSERO_RS20820 -0.7 -0.6 ABC transporter ATP-binding protein compare
HSERO_RS07140 -0.7 -2.6 glutamine-synthetase adenylyltransferase compare
HSERO_RS10400 -0.7 -3.0 inorganic phosphate transporter compare
HSERO_RS02090 -0.7 -0.5 Holliday junction DNA helicase RuvA compare
HSERO_RS15040 -0.7 -3.0 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS07910 -0.6 -1.9 alkylhydroperoxidase compare
HSERO_RS08150 -0.6 -3.0 phasin family protein compare
HSERO_RS03540 -0.6 -0.7 dimethyladenosine transferase compare
HSERO_RS04510 -0.6 -2.2 tail protein compare
HSERO_RS12215 -0.6 -1.5 alpha/beta hydrolase superfamily protein compare
HSERO_RS23760 -0.6 -2.3 hypothetical protein compare
HSERO_RS00735 -0.6 -2.6 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
HSERO_RS21230 -0.6 -1.9 GntR family transcriptional regulator compare
HSERO_RS15545 -0.6 -2.9 membrane protein compare
HSERO_RS01970 -0.6 -2.0 esterase compare
HSERO_RS11085 -0.6 -2.9 L-aspartate oxidase compare
HSERO_RS05810 -0.6 -1.5 sulfurtransferase compare
HSERO_RS17855 -0.6 -2.5 DEAD/DEAH box helicase compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in carbon source experiments

For carbon source D,L-Malic Acid across organisms