Experiment set3IT021 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Citrulline nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.3 -5.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18305 -6.9 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS19005 -6.4 -4.4 3-dehydroquinate synthase compare
RR42_RS30655 -6.0 -5.8 LysR family transcriptional regulator compare
RR42_RS06485 -6.0 -7.1 chorismate synthase compare
RR42_RS16250 -5.7 -6.7 sulfate adenylyltransferase compare
RR42_RS14400 -5.6 -3.9 isopropylmalate isomerase compare
RR42_RS01385 -5.5 -4.9 5,10-methylenetetrahydrofolate reductase compare
RR42_RS33255 -5.4 -3.4 protein-tyrosine phosphatase compare
RR42_RS16270 -5.1 -9.2 sulfite reductase compare
RR42_RS16255 -5.0 -10.1 sulfate adenylyltransferase compare
RR42_RS14390 -4.8 -4.6 3-isopropylmalate dehydratase compare
RR42_RS03955 -4.8 -7.7 amidinotransferase compare
RR42_RS05860 -4.8 -6.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS04475 -4.8 -10.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS33260 -4.6 -8.9 multidrug MFS transporter compare
RR42_RS18295 -4.6 -14.0 anthranilate synthase component I compare
RR42_RS12980 -4.4 -5.2 chemotaxis protein CheY compare
RR42_RS18300 -4.3 -5.1 anthranilate synthase subunit II compare
RR42_RS01160 -4.2 -9.5 homoserine O-acetyltransferase compare
RR42_RS11885 -4.1 -10.8 (protein-PII) uridylyltransferase compare
RR42_RS33250 -4.0 -10.3 tyrosine protein kinase compare
RR42_RS01290 -4.0 -6.8 thiamine biosynthesis protein ThiC compare
RR42_RS16245 -3.9 -7.0 uroporphyrin-III methyltransferase compare
RR42_RS21220 -3.8 -2.6 iron transporter FeoB compare
RR42_RS14365 -3.8 -2.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS12985 -3.8 -8.8 histidine kinase compare
RR42_RS30660 -3.8 -9.0 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS16275 -3.8 -3.6 membrane protein compare
RR42_RS01845 -3.8 -2.3 glycerol-3-phosphate dehydrogenase compare
RR42_RS14385 -3.8 -6.3 3-isopropylmalate dehydrogenase compare
RR42_RS18990 -3.8 -17.6 glutamate synthase compare
RR42_RS12040 -3.8 -13.6 MFS transporter compare
RR42_RS05990 -3.7 -10.9 aromatic amino acid aminotransferase compare
RR42_RS02085 -3.6 -7.9 RNA polymerase subunit sigma-54 compare
RR42_RS15890 -3.6 -9.5 heme biosynthesis protein HemY compare
RR42_RS11790 -3.5 -7.7 phosphoenolpyruvate synthase compare
RR42_RS12925 -3.5 -4.0 ATPase compare
RR42_RS04460 -3.4 -6.8 chorismate mutase compare
RR42_RS16965 -3.4 -5.1 ABC transporter compare
RR42_RS14320 -3.3 -4.5 O-succinylhomoserine sulfhydrylase compare
RR42_RS00115 -3.3 -2.2 hypothetical protein compare
RR42_RS14360 -3.2 -1.7 tryptophan synthase subunit alpha compare
RR42_RS04535 -3.1 -6.1 cysteine synthase compare
RR42_RS16280 -3.1 -4.6 transcriptional regulator compare
RR42_RS03960 -3.1 -9.0 ornithine cyclodeaminase compare
RR42_RS18985 -3.1 -6.4 glutamate synthase compare
RR42_RS19010 -2.9 -6.4 shikimate kinase compare
RR42_RS07605 -2.8 -7.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS33240 -2.8 -14.3 GDP-L-fucose synthase compare
RR42_RS16970 -2.8 -12.4 ABC transporter ATP-binding protein compare
RR42_RS01795 -2.8 -12.7 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS16980 -2.7 -13.3 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS33245 -2.6 -9.6 mannose-1-phosphate guanyltransferase compare
RR42_RS01775 -2.6 -6.7 glutamate--cysteine ligase compare
RR42_RS15905 -2.5 -12.3 phosphoenolpyruvate carboxylase compare
RR42_RS18855 -2.5 -5.2 preprotein translocase compare
RR42_RS17645 -2.5 -8.1 shikimate dehydrogenase compare
RR42_RS14965 -2.5 -4.7 hypothetical protein compare
RR42_RS15410 -2.5 -5.8 membrane protein compare
RR42_RS15895 -2.5 -7.4 uroporphyrinogen III methyltransferase compare
RR42_RS16240 -2.5 -1.3 cobalamin biosynthesis protein CbiX compare
RR42_RS16975 -2.5 -7.5 ABC transporter permease compare
RR42_RS16960 -2.3 -6.5 ABC transporter ATP-binding protein compare
RR42_RS14790 -2.3 -6.6 cobalamin biosynthesis protein CobD compare
RR42_RS17355 -2.3 -1.7 hypothetical protein compare
RR42_RS01780 -2.3 -9.1 glutathione synthetase compare
RR42_RS17105 -2.3 -10.0 Clp protease ClpX compare
RR42_RS00790 -2.2 -9.1 chemotaxis protein CheY compare
RR42_RS33235 -2.2 -7.8 GDP-mannose 4,6-dehydratase compare
RR42_RS02705 -2.1 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS02320 -2.1 -5.7 trehalose phosphatase compare
RR42_RS33210 -2.1 -5.6 teichoic acid biosynthesis protein compare
RR42_RS03080 -2.1 -3.3 recombinase RecA compare
RR42_RS15015 -2.0 -1.6 exodeoxyribonuclease VII small subunit compare
RR42_RS20205 -2.0 -3.4 chromosome partitioning protein compare
RR42_RS20125 -1.9 -14.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) conserved
RR42_RS17805 -1.9 -1.3 hypothetical protein compare
RR42_RS25785 -1.9 -3.5 TetR family transcriptional regulator compare
RR42_RS04895 -1.9 -9.0 serine/threonine protein phosphatase compare
RR42_RS07615 -1.8 -2.1 3-ketoacyl-ACP reductase compare
RR42_RS03940 -1.8 -2.5 membrane protein compare
RR42_RS37400 -1.8 -1.3 6-phosphogluconolactonase compare
RR42_RS12050 -1.8 -6.7 DNA polymerase compare
RR42_RS02045 -1.7 -9.9 GTPase compare
RR42_RS13800 -1.7 -8.4 formyltetrahydrofolate deformylase compare
RR42_RS17060 -1.7 -11.7 histidine kinase compare
RR42_RS04375 -1.7 -5.2 magnesium transporter compare
RR42_RS01755 -1.6 -3.8 nitrogen regulatory protein P-II 1 compare
RR42_RS08220 -1.6 -2.4 hypothetical protein compare
RR42_RS17055 -1.6 -6.1 LuxR family transcriptional regulator compare
RR42_RS15415 -1.5 -1.8 membrane protein compare
RR42_RS24605 -1.5 -6.4 TetR family transcriptional regulator compare
RR42_RS13910 -1.5 -5.1 glutamate racemase compare
RR42_RS06875 -1.4 -2.6 hypothetical protein compare
RR42_RS07365 -1.4 -2.6 pyruvate dehydrogenase compare
RR42_RS15640 -1.4 -1.6 hypothetical protein compare
RR42_RS00380 -1.4 -8.3 GntR family transcriptional regulator compare
RR42_RS10310 -1.4 -2.2 NADPH:quinone reductase compare
RR42_RS32495 -1.4 -2.1 shikimate kinase compare
RR42_RS03095 -1.4 -1.4 succinyl-CoA synthetase subunit beta compare
RR42_RS01785 -1.4 -3.5 PTS fructose transporter subunit IIA compare
RR42_RS21295 -1.4 -1.6 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS07140 -1.3 -1.4 hypothetical protein compare
RR42_RS15465 -1.3 -3.4 TonB-dependent receptor compare
RR42_RS12870 -1.3 -3.2 membrane protein compare
RR42_RS08245 -1.3 -2.4 hypothetical protein compare
RR42_RS04765 -1.3 -2.7 3-oxoacyl-ACP reductase compare
RR42_RS11795 -1.3 -2.2 PEP synthetase regulatory protein compare
RR42_RS07620 -1.3 -4.6 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS33575 -1.3 -2.2 hypothetical protein compare
RR42_RS18850 -1.3 -1.4 preprotein translocase subunit TatC compare
RR42_RS08365 -1.2 -5.9 hypothetical protein compare
RR42_RS08805 -1.2 -2.9 nitrate reductase compare
RR42_RS17390 -1.2 -4.8 ATP-dependent DNA helicase RecG compare
RR42_RS07555 -1.2 -2.2 potassium transporter Kup compare
RR42_RS36415 -1.2 -2.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS19750 -1.2 -1.4 MBL fold metallo-hydrolase compare
RR42_RS12990 -1.2 -2.4 hypothetical protein compare
RR42_RS17620 -1.2 -3.0 phosphatidylglycerophosphatase compare
RR42_RS06630 -1.1 -1.8 integration host factor subunit alpha compare
RR42_RS06240 -1.1 -1.9 tryptophan--tRNA ligase compare
RR42_RS17735 -1.1 -2.9 hypothetical protein compare
RR42_RS25200 -1.1 -4.1 TetR family transcriptional regulator compare
RR42_RS12860 -1.1 -2.2 pseudouridine synthase compare
RR42_RS07860 -1.1 -2.2 acetyltransferase compare
RR42_RS17565 -1.1 -7.3 LysR family transcriptional regulator compare
RR42_RS07565 -1.1 -6.0 transcription accessory protein compare
RR42_RS24790 -1.1 -1.4 LysR family transcriptional regulator compare
RR42_RS10855 -1.1 -1.2 diguanylate phosphodiesterase compare
RR42_RS16220 -1.1 -1.1 DNA polymerase III subunit chi compare
RR42_RS21505 -1.1 -1.3 hypothetical protein compare
RR42_RS34650 -1.1 -3.6 LacI family transcriptional regulator compare
RR42_RS21595 -1.1 -2.4 IclR family transcriptional regulator compare
RR42_RS06250 -1.1 -2.1 dihydrodipicolinate synthase compare
RR42_RS19065 -1.1 -6.1 transcriptional regulator compare
RR42_RS19410 -1.1 -4.6 GntR family transcriptional regulator compare
RR42_RS36660 -1.0 -2.4 GntR family transcriptional regulator compare
RR42_RS15475 -1.0 -3.8 protein tolQ compare
RR42_RS07295 -1.0 -1.9 LysR family transcriptional regulator compare
RR42_RS16260 -1.0 -0.6 phosphoadenosine phosphosulfate reductase compare
RR42_RS02140 -1.0 -1.5 hypothetical protein compare
RR42_RS02375 -1.0 -4.4 membrane protein compare
RR42_RS00410 -1.0 -3.8 transcriptional regulator compare
RR42_RS09300 -1.0 -1.1 aromatic ring-opening dioxygenase LigB compare
RR42_RS17690 -1.0 -3.9 3-dehydroquinate dehydratase compare
RR42_RS16675 -1.0 -1.0 hypothetical protein compare
RR42_RS01380 -1.0 -0.9 membrane protein compare
RR42_RS09015 -1.0 -2.2 trigger factor compare
RR42_RS15845 -1.0 -2.6 biotin transporter BioY compare
RR42_RS04470 -0.9 -2.3 prephenate dehydrogenase compare
RR42_RS21280 -0.9 -3.6 L-lactate permease compare
RR42_RS17730 -0.9 -1.9 hypothetical protein compare
RR42_RS28850 -0.9 -1.6 transcriptional regulator compare
RR42_RS33195 -0.9 -6.4 UDP-sugar lipid carrier transferase compare
RR42_RS14080 -0.9 -5.2 RNA polymerase sigma factor RpoE compare
RR42_RS20195 -0.9 -1.0 ATPase F0F1 compare
RR42_RS31530 -0.9 -2.3 histidine kinase compare
RR42_RS26770 -0.9 -3.5 extradiol dioxygenase compare
RR42_RS02250 -0.9 -2.6 GntR family transcriptional regulator compare
RR42_RS17050 -0.9 -3.8 phosphoribosylglycinamide formyltransferase compare
RR42_RS11530 -0.9 -2.6 LuxR family transcriptional regulator compare
RR42_RS20210 -0.9 -3.3 16S rRNA methyltransferase compare
RR42_RS29865 -0.9 -2.2 hypothetical protein compare
RR42_RS32590 -0.9 -1.3 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS01820 -0.9 -4.1 peptidase S41 compare
RR42_RS07440 -0.9 -1.4 hypothetical protein compare
RR42_RS08025 -0.9 -0.8 phage Gp37Gp68 compare
RR42_RS33215 -0.9 -5.5 transferase compare
RR42_RS09360 -0.9 -1.5 alpha/beta hydrolase compare
RR42_RS05920 -0.9 -2.5 HrcA family transcriptional regulator compare
RR42_RS12550 -0.9 -2.0 hypothetical protein compare
RR42_RS06095 -0.9 -3.3 hypothetical protein compare
RR42_RS18815 -0.9 -4.1 cytochrome C compare
RR42_RS04045 -0.8 -1.9 proline hydroxylase compare
RR42_RS24550 -0.8 -1.7 hypothetical protein compare
RR42_RS15970 -0.8 -1.4 lipoprotein compare
RR42_RS18670 -0.8 -2.3 metal-dependent hydrolase compare
RR42_RS21790 -0.8 -2.0 short-chain dehydrogenase compare
RR42_RS23845 -0.8 -1.7 hypothetical protein compare
RR42_RS13025 -0.8 -2.7 hypothetical protein compare
RR42_RS17720 -0.8 -1.7 sugar kinase compare
RR42_RS27530 -0.8 -2.2 hypothetical protein compare
RR42_RS23690 -0.8 -2.1 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
RR42_RS06450 -0.8 -4.6 membrane protein compare
RR42_RS21720 -0.8 -1.1 acetoin catabolism protein X compare
RR42_RS17930 -0.8 -1.8 RNA pyrophosphohydrolase compare
RR42_RS21150 -0.8 -0.7 hypothetical protein compare
RR42_RS04245 -0.8 -1.8 chemotaxis protein CheY compare
RR42_RS21290 -0.8 -3.2 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS31505 -0.8 -1.2 hypothetical protein compare
RR42_RS28885 -0.8 -2.6 membrane protein compare
RR42_RS27095 -0.8 -1.9 hypothetical protein compare
RR42_RS14055 -0.8 -1.7 elongation factor 4 compare
RR42_RS24040 -0.8 -2.6 hypothetical protein compare
RR42_RS12015 -0.8 -1.1 dihydrolipoamide acyltransferase compare
RR42_RS28620 -0.8 -1.9 ABC transporter compare
RR42_RS15455 -0.8 -2.9 membrane protein compare
RR42_RS18820 -0.8 -3.3 cytochrome B compare
RR42_RS09790 -0.8 -2.1 ABC transporter compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Citrulline in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Citrulline across organisms