Experiment set3IT021 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Citrulline nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS08210 +2.0 2.5 hypothetical protein compare
RR42_RS21755 +1.2 3.2 shikimate dehydrogenase compare
RR42_RS04015 +1.2 2.2 RNA polymerase sigma factor compare
RR42_RS35240 +1.2 3.6 acyl-CoA dehydrogenase compare
RR42_RS29610 +1.2 2.0 cytochrome C2 compare
RR42_RS04255 +1.1 2.4 chemotaxis protein CheW compare
RR42_RS34115 +1.1 4.5 hypothetical protein compare
RR42_RS31495 +1.1 1.1 Cro/Cl family transcriptional regulator compare
RR42_RS33850 +1.0 3.1 hypothetical protein compare
RR42_RS06020 +1.0 1.2 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS34680 +1.0 1.5 short-chain dehydrogenase compare
RR42_RS23910 +0.9 3.6 hypothetical protein compare
RR42_RS07150 +0.9 1.4 hypothetical protein compare
RR42_RS08000 +0.9 1.2 hypothetical protein compare
RR42_RS03085 +0.9 1.2 RecX family transcriptional regulator compare
RR42_RS33660 +0.9 2.8 dihydrofolate reductase compare
RR42_RS31330 +0.9 1.1 LysR family transcriptional regulator compare
RR42_RS28400 +0.9 2.0 CoA-transferase compare
RR42_RS32870 +0.9 2.3 stress responsive protein compare
RR42_RS35895 +0.9 2.9 PadR family transcriptional regulator compare
RR42_RS29280 +0.8 1.1 hypothetical protein compare
RR42_RS08790 +0.8 1.7 zinc-binding protein compare
RR42_RS27180 +0.8 1.9 alkylhydroperoxidase compare
RR42_RS25965 +0.8 2.3 LuxR family transcriptional regulator compare
RR42_RS27395 +0.8 2.6 GntR family transcriptional regulator compare
RR42_RS00625 +0.8 1.3 hypothetical protein compare
RR42_RS15245 +0.8 1.8 alpha/beta hydrolase compare
RR42_RS26205 +0.8 3.7 LysR family transcriptional regulator compare
RR42_RS10920 +0.8 1.7 hypothetical protein compare
RR42_RS20360 +0.8 1.6 AsnC family transcriptional regulator compare
RR42_RS28670 +0.8 2.0 hypothetical protein compare
RR42_RS18335 +0.8 2.5 nitrate ABC transporter ATP-binding protein compare
RR42_RS22845 +0.8 1.9 cell envelope biogenesis protein OmpA compare
RR42_RS09375 +0.8 1.0 taurine dioxygenase compare
RR42_RS32960 +0.8 1.9 2-dehydropantoate 2-reductase compare
RR42_RS19795 +0.8 1.4 GntR family transcriptional regulator compare
RR42_RS00600 +0.7 0.3 DeoR family transcriptional regulator compare
RR42_RS30410 +0.7 1.5 hypothetical protein compare
RR42_RS24760 +0.7 0.9 hypothetical protein compare
RR42_RS37055 +0.7 1.8 hypothetical protein compare
RR42_RS03530 +0.7 0.9 hypothetical protein compare
RR42_RS31995 +0.7 2.2 flavin reductase compare
RR42_RS15060 +0.7 2.1 membrane protein compare
RR42_RS06670 +0.7 2.8 hypothetical protein compare
RR42_RS27885 +0.7 2.6 2-keto-4-pentenoate hydratase compare
RR42_RS01210 +0.7 1.8 n-acetyl-gamma-glutamyl-phosphate reductase compare
RR42_RS09590 +0.7 1.1 hypothetical protein compare
RR42_RS08945 +0.7 0.9 hypothetical protein compare
RR42_RS21455 +0.7 1.6 transposase compare
RR42_RS04060 +0.7 1.9 hypothetical protein compare
RR42_RS34935 +0.7 0.9 cytochrome C oxidase subunit IV compare
RR42_RS19490 +0.7 2.5 general secretion pathway protein GspI compare
RR42_RS27485 +0.7 2.7 peptidase M20 compare
RR42_RS08615 +0.7 1.3 membrane protein compare
RR42_RS18730 +0.7 1.1 hypothetical protein compare
RR42_RS04090 +0.7 2.2 type II secretion system protein compare
RR42_RS02030 +0.7 1.4 membrane protein compare
RR42_RS01705 +0.7 1.8 Fis family transcriptional regulator compare
RR42_RS17335 +0.7 2.1 DeoR family transcriptional regulator compare
RR42_RS21075 +0.6 0.7 phosphoribosyltransferase compare
RR42_RS12080 +0.6 1.9 lipase compare
RR42_RS12240 +0.6 0.8 hypothetical protein compare
RR42_RS02590 +0.6 1.1 amino acid ABC transporter ATP-binding protein compare
RR42_RS14335 +0.6 1.6 sporulation protein compare
RR42_RS02840 +0.6 2.8 cation transporter compare
RR42_RS32035 +0.6 2.2 short-chain dehydrogenase compare
RR42_RS07245 +0.6 1.0 hypothetical protein compare
RR42_RS01605 +0.6 2.9 hydrolase compare
RR42_RS25600 +0.6 1.3 AraC family transcriptional regulator compare
RR42_RS07265 +0.6 1.7 hypothetical protein compare
RR42_RS18785 +0.6 3.1 hypothetical protein compare
RR42_RS36495 +0.6 2.4 enoyl-CoA hydratase compare
RR42_RS18385 +0.6 1.8 hypothetical protein compare
RR42_RS23870 +0.6 1.9 hypothetical protein compare
RR42_RS32830 +0.6 1.3 hypothetical protein compare
RR42_RS11225 +0.6 1.7 peptide ABC transporter permease compare
RR42_RS08330 +0.6 0.8 hypothetical protein compare
RR42_RS07825 +0.6 1.4 D-amino acid oxidase compare
RR42_RS14520 +0.6 1.3 mobilization protein compare
RR42_RS05935 +0.6 2.5 membrane protein compare
RR42_RS15225 +0.6 0.9 RNA-binding protein compare
RR42_RS27405 +0.6 3.2 aminotransferase compare
RR42_RS12085 +0.6 1.5 glyoxalase compare
RR42_RS11475 +0.6 3.7 pyrroloquinoline quinone biosynthesis protein PqqE compare
RR42_RS35140 +0.6 1.2 2-hydroxylaminobenzoate mutase compare
RR42_RS06785 +0.6 1.3 hypothetical protein compare
RR42_RS08260 +0.6 1.3 hypothetical protein compare
RR42_RS16780 +0.6 1.9 hypothetical protein compare
RR42_RS24475 +0.6 2.7 hypothetical protein compare
RR42_RS09060 +0.6 1.5 glucose-6-phosphate isomerase compare
RR42_RS30765 +0.6 0.9 tRNA-Arg compare
RR42_RS03985 +0.6 3.3 histidine kinase compare
RR42_RS03605 +0.6 2.5 glutathionyl-hydroquinone reductase YqjG compare
RR42_RS09515 +0.6 1.6 hypothetical protein compare
RR42_RS23630 +0.6 2.7 hypothetical protein compare
RR42_RS26535 +0.6 1.1 diguanylate cyclase compare
RR42_RS12290 +0.6 1.7 alkanesulfonate monooxygenase compare
RR42_RS08410 +0.6 1.9 hypothetical protein compare
RR42_RS14905 +0.6 0.8 hypothetical protein compare
RR42_RS15755 +0.6 1.7 acetyltransferase compare
RR42_RS02420 +0.5 0.6 SAM-dependent methyltransferase compare
RR42_RS32050 +0.5 1.2 AraC family transcriptional regulator compare
RR42_RS32735 +0.5 1.9 3-methylcrotonyl-CoA carboxylase compare
RR42_RS25840 +0.5 2.9 ArsR family transcriptional regulator compare
RR42_RS28935 +0.5 3.0 hypothetical protein compare
RR42_RS14930 +0.5 1.6 biopolymer transporter ExbD compare
RR42_RS08840 +0.5 1.7 regulator of cell morphogenesis and NO signaling compare
RR42_RS09180 +0.5 0.8 Rrf2 family transcriptional regulator compare
RR42_RS23265 +0.5 3.1 MFS transporter compare
RR42_RS05620 +0.5 1.4 esterase compare
RR42_RS36560 +0.5 1.4 ABC transporter substrate-binding protein compare
RR42_RS24815 +0.5 2.1 hypothetical protein compare
RR42_RS23955 +0.5 1.7 hypothetical protein compare
RR42_RS34710 +0.5 2.8 chemotaxis protein CheY compare
RR42_RS35990 +0.5 1.8 pilus assembly protein compare
RR42_RS09975 +0.5 2.6 hypothetical protein compare
RR42_RS30965 +0.5 1.5 hypothetical protein compare
RR42_RS00345 +0.5 0.8 LysR family transcriptional regulator compare
RR42_RS21825 +0.5 1.5 hypothetical protein compare
RR42_RS35780 +0.5 1.1 chemotaxis protein CheY compare
RR42_RS03905 +0.5 1.8 hypothetical protein compare
RR42_RS20700 +0.5 1.8 GMC family oxidoreductase compare
RR42_RS32085 +0.5 0.8 hypothetical protein compare
RR42_RS28695 +0.5 1.0 hypothetical protein compare
RR42_RS30355 +0.5 2.4 4-amino-4-deoxy-L-arabinose transferase compare
RR42_RS25590 +0.5 1.8 glucose 1-dehydrogenase compare
RR42_RS27055 +0.5 2.9 membrane protein compare
RR42_RS26030 +0.5 3.0 biotin carboxylase compare
RR42_RS26485 +0.5 1.1 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS19485 +0.5 0.7 general secretion pathway protein GspH compare
RR42_RS00300 +0.5 1.5 kinase compare
RR42_RS34945 +0.5 1.1 bb3-type cytochrome oxidase subunit III compare
RR42_RS36835 +0.5 1.2 cytochrome P450 compare
RR42_RS32180 +0.5 1.1 tripartite tricarboxylate transporter TctB compare
RR42_RS07240 +0.5 1.1 hypothetical protein compare
RR42_RS05410 +0.5 1.4 acetyltransferase compare
RR42_RS33815 +0.5 0.5 isochorismatase compare
RR42_RS09495 +0.5 1.9 LacI family transcriptional regulator compare
RR42_RS18425 +0.5 0.6 hypothetical protein compare
RR42_RS22295 +0.5 0.8 methionine sulfoxide reductase B compare
RR42_RS32400 +0.5 2.1 hypothetical protein compare
RR42_RS32905 +0.5 1.5 cytosine deaminase compare
RR42_RS32505 +0.5 1.3 sulfonate ABC transporter ATP-binding protein compare
RR42_RS11285 +0.5 2.8 thioesterase compare
RR42_RS35445 +0.5 2.2 ArsR family transcriptional regulator compare
RR42_RS03505 +0.5 1.5 replication/virulence associated protein compare
RR42_RS10515 +0.5 1.3 fumarylacetoacetate hydrolase compare
RR42_RS19465 +0.5 3.5 AsnC family transcriptional regulator compare
RR42_RS36045 +0.5 2.4 hypothetical protein compare
RR42_RS06870 +0.5 1.1 hypothetical protein compare
RR42_RS10980 +0.5 1.9 hydroxypyruvate isomerase compare
RR42_RS17555 +0.5 0.9 hypothetical protein compare
RR42_RS31055 +0.5 0.7 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS04000 +0.5 1.0 (2Fe-2S)-binding protein compare
RR42_RS00620 +0.5 3.0 XRE family transcriptional regulator compare
RR42_RS23405 +0.5 2.2 hypothetical protein compare
RR42_RS09255 +0.5 1.7 copper resistance protein CopQ compare
RR42_RS19895 +0.5 0.8 elongation factor GreAB compare
RR42_RS07115 +0.5 0.5 hypothetical protein compare
RR42_RS25025 +0.5 3.0 sugar ABC transporter ATPase compare
RR42_RS18140 +0.5 0.8 MarR family transcriptional regulator compare
RR42_RS04810 +0.5 1.2 glycine/betaine ABC transporter permease compare
RR42_RS07735 +0.5 1.2 histidine kinase compare
RR42_RS26050 +0.5 1.8 hypothetical protein compare
RR42_RS22145 +0.5 1.5 amine dehydrogenase compare
RR42_RS31820 +0.4 1.5 short-chain dehydrogenase compare
RR42_RS01515 +0.4 1.4 cytidyltransferase compare
RR42_RS29330 +0.4 2.1 hypothetical protein compare
RR42_RS13685 +0.4 1.4 cupin compare
RR42_RS08550 +0.4 1.2 tail fiber protein compare
RR42_RS18560 +0.4 1.9 multidrug transporter MatE compare
RR42_RS37505 +0.4 2.1 peptidase C39 compare
RR42_RS35600 +0.4 0.9 hypothetical protein compare
RR42_RS35725 +0.4 1.2 flagellar biosynthesis protein FlgB compare
RR42_RS32430 +0.4 1.7 SAM-dependent methyltransferase compare
RR42_RS15165 +0.4 1.9 ABC transporter substrate-binding protein compare
RR42_RS05030 +0.4 1.2 hypothetical protein compare
RR42_RS21450 +0.4 1.2 hypothetical protein compare
RR42_RS13260 +0.4 1.6 CoA-transferase compare
RR42_RS27475 +0.4 1.1 phospholipid-binding protein compare
RR42_RS01485 +0.4 1.3 phosphonate transporter compare
RR42_RS03895 +0.4 1.9 paraquat-inducible protein A compare
RR42_RS04420 +0.4 1.9 required for efflux of an amino acid polymer (from data) compare
RR42_RS08865 +0.4 1.0 hydroxylase compare
RR42_RS08180 +0.4 0.7 hypothetical protein compare
RR42_RS26885 +0.4 1.3 peptidase M20 compare
RR42_RS16925 +0.4 1.8 histidine utilization repressor compare
RR42_RS26555 +0.4 0.7 tRNA-Met compare
RR42_RS31915 +0.4 0.8 short-chain dehydrogenase compare
RR42_RS04675 +0.4 1.2 alkylhydroperoxidase compare
RR42_RS24495 +0.4 1.5 hypothetical protein compare
RR42_RS32765 +0.4 1.8 hypothetical protein compare
RR42_RS02165 +0.4 1.7 LysR family transcriptional regulator compare
RR42_RS12430 +0.4 0.9 LysR family transcriptional regulator compare
RR42_RS03545 +0.4 1.5 hypothetical protein compare
RR42_RS08670 +0.4 1.8 ATP synthase I compare
RR42_RS37130 +0.4 2.3 hypothetical protein compare
RR42_RS10540 +0.4 1.3 acetyl-CoA acetyltransferase compare
RR42_RS15610 +0.4 1.5 cupin compare
RR42_RS15510 +0.4 1.7 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Citrulline in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Citrulline across organisms