Experiment set3IT021 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 3; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.0 -4.9 NUDIX domain-containing protein compare
ABZR87_RS08630 -6.2 -4.3 dihydroorotase compare
ABZR87_RS12960 -5.2 -2.4 head completion/stabilization protein compare
ABZR87_RS14115 -4.9 -4.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS01255 -4.9 -15.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS05100 -4.7 -4.6 RNA polymerase-binding protein DksA compare
ABZR87_RS13645 -4.6 -2.1 hypothetical protein compare
ABZR87_RS06400 -4.2 -7.2 response regulator transcription factor compare
ABZR87_RS04975 -4.2 -2.9 peptide deformylase compare
ABZR87_RS08695 -4.2 -17.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS16845 -4.1 -1.9 hypothetical protein compare
ABZR87_RS10170 -4.1 -5.6 RseA family anti-sigma factor compare
ABZR87_RS13705 -4.0 -2.8 integration host factor subunit alpha compare
ABZR87_RS11790 -4.0 -2.7 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS01225 -3.9 -4.4 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS08990 -3.9 -7.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS08795 -3.9 -3.8 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS05305 -3.8 -12.5 TetR family transcriptional regulator compare
ABZR87_RS00435 -3.8 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS09515 -3.8 -2.6 cysteine synthase CysM compare
ABZR87_RS16170 -3.7 -2.5 argininosuccinate lyase compare
ABZR87_RS02550 -3.6 -4.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS07050 -3.6 -2.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08980 -3.6 -4.9 cell envelope integrity protein TolA compare
ABZR87_RS07510 -3.6 -4.9 LysR family transcriptional regulator compare
ABZR87_RS14965 -3.5 -4.1 DUF3619 family protein compare
ABZR87_RS08985 -3.5 -11.9 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS02445 -3.5 -4.7 Sec-independent protein translocase protein TatB compare
ABZR87_RS08970 -3.4 -8.6 protein TolQ compare
ABZR87_RS04995 -3.4 -2.3 DNA topoisomerase III compare
ABZR87_RS02850 -3.3 -2.3 elongation factor Tu compare
ABZR87_RS04865 -3.2 -4.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02440 -3.1 -8.8 twin-arginine translocase subunit TatC compare
ABZR87_RS16270 -3.1 -2.0 cold-shock protein compare
ABZR87_RS21285 -3.1 -2.6 TetR/AcrR family transcriptional regulator compare
ABZR87_RS12785 -3.0 -5.1 endopeptidase La compare
ABZR87_RS10980 -3.0 -1.9 tRNA-Leu compare
ABZR87_RS02535 -2.9 -5.2 phospholipid-binding protein MlaC compare
ABZR87_RS06745 -2.9 -5.2 S41 family peptidase compare
ABZR87_RS07005 -2.9 -2.8 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS02375 -2.8 -10.4 cytochrome c1 compare
ABZR87_RS22920 -2.8 -5.4 phosphogluconate dehydratase compare
ABZR87_RS11180 -2.8 -6.0 fumarate/nitrate reduction transcriptional regulator Fnr compare
ABZR87_RS11010 -2.8 -3.2 oxidative damage protection protein compare
ABZR87_RS04940 -2.8 -5.3 PAS domain-containing sensor histidine kinase compare
ABZR87_RS16960 -2.7 -4.2 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS14605 -2.7 -13.1 aconitate hydratase AcnA compare
ABZR87_RS21815 -2.6 -1.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS21950 -2.6 -8.0 hypothetical protein compare
ABZR87_RS13300 -2.6 -6.8 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS09935 -2.5 -2.5 amino acid aminotransferase compare
ABZR87_RS01685 -2.5 -7.9 histone H1-like DNA-binding protein compare
ABZR87_RS09615 -2.5 -1.7 50S ribosomal protein L19 compare
ABZR87_RS08700 -2.5 -7.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS02545 -2.4 -7.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS01615 -2.4 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS06385 -2.4 -11.2 CHASE3 domain-containing protein compare
ABZR87_RS08625 -2.4 -1.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS01245 -2.4 -2.3 Dps family protein compare
ABZR87_RS12790 -2.4 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS15715 -2.4 -6.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS07055 -2.4 -7.8 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS06350 -2.4 -7.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS12965 -2.3 -2.5 tail protein X compare
ABZR87_RS14375 -2.3 -3.8 fumarate hydratase compare
ABZR87_RS17145 -2.3 -12.2 AMP nucleosidase compare
ABZR87_RS11245 -2.3 -3.8 translational GTPase TypA compare
ABZR87_RS05065 -2.3 -3.8 tyrosine recombinase XerC compare
ABZR87_RS05645 -2.3 -4.6 SDR family oxidoreductase compare
ABZR87_RS12795 -2.2 -4.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS02590 -2.2 -7.4 3-dehydroquinate synthase compare
ABZR87_RS10400 -2.2 -1.5 hypothetical protein compare
ABZR87_RS13475 -2.2 -7.6 PAS domain S-box protein compare
ABZR87_RS23095 -2.1 -1.7 MarR family transcriptional regulator compare
ABZR87_RS10195 -2.1 -3.2 signal peptidase I compare
ABZR87_RS07035 -2.1 -7.6 RNase adapter RapZ compare
ABZR87_RS02540 -2.1 -5.9 VacJ family lipoprotein compare
ABZR87_RS07625 -2.1 -2.0 Holliday junction branch migration protein RuvA compare
ABZR87_RS02555 -2.1 -6.0 ABC transporter ATP-binding protein compare
ABZR87_RS11330 -2.1 -3.1 transcriptional repressor LexA compare
ABZR87_RS01555 -2.0 -1.7 barstar family protein compare
ABZR87_RS08640 -2.0 -4.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS01035 -2.0 -5.4 histidine utilization repressor compare
ABZR87_RS07730 -2.0 -2.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS02640 -2.0 -8.7 diaminopimelate decarboxylase compare
ABZR87_RS01885 -2.0 -3.2 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS11940 -2.0 -2.4 SsrA-binding protein SmpB compare
ABZR87_RS13790 -2.0 -7.7 chorismate synthase compare
ABZR87_RS00970 -2.0 -1.3 molecular chaperone DnaJ compare
ABZR87_RS14540 -1.9 -6.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS15505 -1.9 -1.5 DNA polymerase III subunit alpha compare
ABZR87_RS14190 -1.9 -9.0 DUF2589 domain-containing protein compare
ABZR87_RS09465 -1.9 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS22300 -1.9 -1.5 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS05590 -1.9 -1.3 orotate phosphoribosyltransferase compare
ABZR87_RS00875 -1.9 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS02380 -1.8 -8.1 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS04945 -1.8 -2.5 DUF4390 domain-containing protein compare
ABZR87_RS00340 -1.8 -1.7 50S ribosomal protein L33 compare
ABZR87_RS01240 -1.8 -8.8 catalase/peroxidase HPI compare
ABZR87_RS07355 -1.8 -6.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS00835 -1.7 -1.2 argininosuccinate synthase compare
ABZR87_RS16055 -1.7 -5.3 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS03435 -1.7 -6.9 type II secretion system protein GspL compare
ABZR87_RS17650 -1.7 -4.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01280 -1.7 -3.4 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS02385 -1.7 -4.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS07380 -1.7 -10.0 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02655 -1.7 -6.8 anti-sigma factor compare
ABZR87_RS10785 -1.7 -3.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS03460 -1.6 -8.2 type II secretion system inner membrane protein GspF compare
ABZR87_RS05570 -1.6 -5.9 lysophospholipid acyltransferase family protein compare
ABZR87_RS05350 -1.6 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS09710 -1.6 -3.0 tRNA-Arg compare
ABZR87_RS14500 -1.6 -8.7 tryptophan synthase subunit beta compare
ABZR87_RS11435 -1.6 -2.6 Mth938-like domain-containing protein compare
ABZR87_RS14535 -1.6 -3.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02155 -1.6 -5.7 anthranilate phosphoribosyltransferase compare
ABZR87_RS12120 -1.6 -1.7 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS01085 -1.6 -3.5 rhombosortase compare
ABZR87_RS01980 -1.6 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS14530 -1.6 -4.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS07965 -1.5 -4.2 recombinase RecA compare
ABZR87_RS05990 -1.5 -3.4 AraC family transcriptional regulator compare
ABZR87_RS03425 -1.5 -6.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS10085 -1.5 -1.4 Rne/Rng family ribonuclease compare
ABZR87_RS08660 -1.5 -3.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS03410 -1.5 -4.5 type II secretion system major pseudopilin GspG compare
ABZR87_RS16730 -1.5 -4.4 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS11195 -1.5 -6.3 pseudouridine synthase compare
ABZR87_RS01855 -1.5 -6.1 A24 family peptidase compare
ABZR87_RS10610 -1.5 -1.0 inositol monophosphatase family protein compare
ABZR87_RS04880 -1.5 -6.3 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS15705 -1.5 -3.3 UvrD-helicase domain-containing protein compare
ABZR87_RS16250 -1.5 -3.3 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS10190 -1.5 -6.0 translation elongation factor 4 compare
ABZR87_RS06705 -1.5 -8.4 glutamate--cysteine ligase compare
ABZR87_RS04125 -1.5 -2.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS12955 -1.4 -2.9 terminase endonuclease subunit compare
ABZR87_RS01275 -1.4 -4.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS14505 -1.4 -2.7 phosphoribosylanthranilate isomerase compare
ABZR87_RS03440 -1.4 -4.0 type II secretion system protein GspM compare
ABZR87_RS13290 -1.4 -3.4 3-ketoacyl-ACP reductase compare
ABZR87_RS03430 -1.4 -7.4 type II secretion system minor pseudopilin GspK compare
ABZR87_RS09625 -1.4 -8.4 CobD/CbiB family protein compare
ABZR87_RS20555 -1.4 -3.4 helix-turn-helix transcriptional regulator compare
ABZR87_RS16735 -1.4 -8.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS03450 -1.4 -8.1 type II secretion system secretin GspD compare
ABZR87_RS04265 -1.4 -5.6 phenylalanine 4-monooxygenase compare
ABZR87_RS01270 -1.4 -5.4 ATP-dependent DNA helicase RecG compare
ABZR87_RS17235 -1.4 -4.3 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS16185 -1.4 -2.1 dCTP deaminase compare
ABZR87_RS02220 -1.4 -6.5 redox-regulated ATPase YchF compare
ABZR87_RS12145 -1.4 -2.7 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS02075 -1.4 -2.0 23S ribosomal RNA compare
ABZR87_RS11140 -1.3 -1.4 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR87_RS16125 -1.3 -3.7 heme biosynthesis protein HemY compare
ABZR87_RS10175 -1.3 -2.8 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS10650 -1.3 -3.4 DNA-3-methyladenine glycosylase compare
ABZR87_RS12950 -1.3 -4.0 phage major capsid protein, P2 family compare
ABZR87_RS18695 -1.3 -5.7 sugar-binding transcriptional regulator compare
ABZR87_RS11015 -1.3 -2.9 amino-acid N-acetyltransferase compare
ABZR87_RS11420 -1.3 -1.5 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS13285 -1.3 -6.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS00360 -1.3 -1.3 acyl-CoA desaturase compare
ABZR87_RS22035 -1.3 -2.6 hypothetical protein compare
ABZR87_RS08505 -1.3 -1.1 CpaE family protein compare
ABZR87_RS23360 -1.2 -2.2 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS02515 -1.2 -1.8 BolA family protein compare
ABZR87_RS09000 -1.2 -4.6 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS12970 -1.2 -1.5 putative holin compare
ABZR87_RS10565 -1.2 -1.2 cupin domain-containing protein compare
ABZR87_RS04235 -1.2 -5.3 heavy metal translocating P-type ATPase compare
ABZR87_RS07620 -1.2 -2.4 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS06845 -1.2 -5.6 heme o synthase compare
ABZR87_RS13415 -1.2 -3.8 IclR family transcriptional regulator compare
ABZR87_RS15680 -1.2 -4.2 DNA polymerase I compare
ABZR87_RS10395 -1.2 -3.1 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS08235 -1.2 -1.2 hypothetical protein compare
ABZR87_RS20875 -1.2 -4.1 LysR family transcriptional regulator compare
ABZR87_RS03455 -1.2 -5.8 type II secretion system ATPase GspE compare
ABZR87_RS13350 -1.2 -2.9 potassium transporter Kup compare
ABZR87_RS22910 -1.1 -1.5 6-phosphogluconolactonase compare
ABZR87_RS11125 -1.1 -3.6 cell division protein ZapE compare
ABZR87_RS22970 -1.1 -5.6 cystathionine gamma-synthase family protein compare
ABZR87_RS08650 -1.1 -5.5 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS07710 -1.1 -4.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS03445 -1.1 -3.5 type II secretion system protein N compare
ABZR87_RS14490 -1.1 -5.2 tryptophan synthase subunit alpha compare
ABZR87_RS13175 -1.1 -1.3 tRNA-Leu compare
ABZR87_RS10780 -1.1 -2.1 PD-(D/E)XK nuclease family protein compare
ABZR87_RS03780 -1.1 -1.3 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS00795 -1.1 -1.7 site-specific tyrosine recombinase XerD compare
ABZR87_RS17240 -1.1 -5.0 alkyl hydroperoxide reductase subunit F compare
ABZR87_RS05170 -1.1 -0.7 acetylglutamate kinase compare
ABZR87_RS21955 -1.1 -3.2 hypothetical protein compare
ABZR87_RS02565 -1.1 -3.4 glutamate synthase subunit beta compare
ABZR87_RS04335 -1.1 -6.1 septum site-determining protein MinC compare
ABZR87_RS07605 -1.0 -1.8 D-aminoacyl-tRNA deacylase compare
ABZR87_RS06840 -1.0 -4.3 COX15/CtaA family protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in soil experiments