Experiment set3IT020 for Rhodospirillum rubrum S1H

Compare to:

Valeric acid 25 mM; anaerobic

200 most important genes:

  gene name fitness t score description  
Rru_A0619 -7.3 -2.4 Magnesium protoporphyrin O-methyltransferase (NCBI) compare
Rru_A3190 -7.0 -2.9 Aspartate carbamoyltransferase (NCBI) compare
Rru_A1190 -5.4 -1.4 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A3558 -5.0 -1.8 Protein of unknown function UPF0005 (NCBI) compare
Rru_A0397 -4.8 -7.2 Argininosuccinate lyase (NCBI) compare
Rru_A0394 -4.7 -3.7 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A0752 -4.7 -1.9 hypothetical protein (NCBI) compare
Rru_A3594 -4.7 -4.5 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A3380 -4.5 -2.9 hypothetical protein (NCBI) compare
Rru_A1837 -4.5 -4.9 Porphobilinogen synthase (NCBI) compare
Rru_A1897 -4.4 -5.8 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A3341 -4.4 -2.6 Acetylglutamate kinase (NCBI) compare
Rru_A3425 -4.3 -9.8 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A2983 -4.1 -1.1 Polyprenyl synthetase (NCBI) compare
Rru_A1239 -4.1 -1.5 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A3428 -4.0 -14.0 Tryptophan synthase (NCBI) compare
Rru_A2974 -4.0 -9.9 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A2886 -4.0 -21.0 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A1189 -4.0 -12.0 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A0486 -3.9 -9.6 von Willebrand factor, type A (NCBI) compare
Rru_A3751 -3.9 -13.2 Argininosuccinate synthase (NCBI) compare
Rru_A3227 -3.9 -7.2 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A2847 -3.8 -1.0 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A3162 -3.8 -14.0 Prephenate dehydratase (NCBI) compare
Rru_A3267 -3.8 -7.4 Methionine biosynthesis MetW (NCBI) compare
Rru_A0485 -3.7 -7.3 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A1894 -3.7 -6.5 heavy metal translocating P-type ATPase (NCBI) compare
Rru_A1105 -3.7 -8.2 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A2421 -3.6 -7.4 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A1786 -3.6 -17.7 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A0058 -3.5 -0.9 Dihydrokaempferol 4-reductase (NCBI) compare
Rru_A3266 -3.5 -10.4 Homoserine O-acetyltransferase (NCBI) compare
Rru_A1530 -3.5 -17.4 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A1896 -3.4 -6.3 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A0622 -3.4 -8.0 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A1895 -3.4 -2.0 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A2975 -3.4 -12.8 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A2978 -3.4 -8.7 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A0617 -3.3 -3.8 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A3276 -3.2 -2.8 Ornithine carbamoyltransferase (NCBI) compare
Rru_A2772 -3.2 -2.1 ATP phosphoribosyltransferase (NCBI) compare
Rru_A0469 -3.2 -11.5 Ketol-acid reductoisomerase (NCBI) compare
Rru_A0467 -3.2 -12.9 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A3214 -3.1 -10.8 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A1620 -3.1 -1.0 hypothetical protein (NCBI) compare
Rru_A2979 -3.1 -7.9 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A2525 -3.1 -11.5 Peptidase U32 (NCBI) compare
Rru_A1021 -3.1 -1.7 Sigma 32 (RpoH) (NCBI) compare
Rru_A0468 -3.0 -5.0 Acetolactate synthase, small subunit (NCBI) compare
Rru_A0627 -3.0 -7.8 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A2524 -3.0 -11.7 Peptidase U32 (NCBI) compare
Rru_A0621 -2.9 -14.4 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A1827 -2.9 -8.9 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A3277 -2.9 -4.0 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A3264 -2.9 -6.1 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A2370 -2.8 -2.0 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A0296 -2.8 -1.7 hypothetical protein (NCBI) compare
Rru_A2981 -2.8 -4.4 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A3548 -2.8 -8.3 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A0644 -2.8 -1.5 hypothetical protein (NCBI) compare
Rru_A2549 -2.7 -7.8 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A0052 -2.7 -12.8 Biotin carboxylase (NCBI) compare
Rru_A0620 -2.6 -5.9 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A2183 -2.6 -7.9 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A3427 -2.6 -10.4 Tryptophan synthase, beta chain (NCBI) compare
Rru_A0624 -2.6 -7.1 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A2404 -2.6 -7.9 Phosphoribulokinase (NCBI) compare
Rru_A0053 -2.5 -9.2 Carboxyl transferase (NCBI) compare
Rru_A2771 -2.5 -4.6 Histidinol dehydrogenase (NCBI) compare
Rru_A2980 -2.5 -8.2 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A2400 -2.5 -11.3 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A1775 -2.5 -2.6 chromosome segregation and condensation protein ScpA (NCBI) compare
Rru_A1928 -2.5 -12.3 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A2181 -2.5 -10.8 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A1191 -2.5 -9.8 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A0274 -2.5 -4.0 Acetyl-CoA C-acetyltransferase (NCBI) compare
Rru_A0514 -2.4 -7.8 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A2936 -2.4 -7.2 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A1691 -2.4 -7.7 Spermine synthase (NCBI) compare
Rru_A0574 -2.4 -1.4 Carboxylyase-related protein (NCBI) compare
Rru_A0683 -2.3 -0.6 3-deoxy-7-phosphoheptulonate synthase (NCBI) compare
Rru_A2885 -2.3 -6.7 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A2403 -2.3 -13.3 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A3165 -2.3 -7.3 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A1849 -2.2 -1.5 Recombination protein O, RecO (NCBI) compare
Rru_A2167 -2.1 -6.4 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A0181 -2.0 -2.2 hypothetical protein (NCBI) compare
Rru_A2363 -2.0 -6.8 Endonuclease/exonuclease/phosphatase (NCBI) compare
Rru_A0180 -2.0 -1.6 hypothetical protein (NCBI) compare
Rru_A0615 -1.8 -1.6 photosynthetic complex assembly protein (NCBI) compare
Rru_A3547 -1.8 -3.2 hypothetical protein (NCBI) compare
Rru_A0404 -1.8 -12.7 Amidophosphoribosyl transferase (NCBI) compare
Rru_A2510 -1.8 -1.9 hypothetical protein (NCBI) compare
Rru_A3054 -1.8 -2.0 Ribonuclease H (NCBI) compare
Rru_A0613 -1.8 -3.1 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A2085 -1.7 -2.1 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) compare
Rru_A2982 -1.7 -4.8 O-methyltransferase, family 2 (NCBI) compare
Rru_A1536 -1.7 -3.5 UvrD/REP helicase (NCBI) compare
Rru_A0159 -1.7 -1.7 Exodeoxyribonuclease VII (NCBI) compare
Rru_A0618 -1.7 -4.3 PUCC protein (NCBI) compare
Rru_A3397 -1.7 -1.3 hypothetical protein (NCBI) compare
Rru_A3424 -1.6 -2.0 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A2100 -1.6 -3.4 Protein of unknown function DUF81 (NCBI) compare
Rru_A3010 -1.6 -4.7 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2497 -1.6 -4.7 Peptide chain release factor 3 (NCBI) compare
Rru_A1051 -1.6 -2.0 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) compare
Rru_A0291 -1.6 -1.7 hypothetical protein (NCBI) compare
Rru_A3268 -1.6 -1.8 hypothetical protein (NCBI) compare
Rru_A2038 -1.6 -5.7 Glutamate-ammonia-ligase adenylyltransferase (NCBI) compare
Rru_A1890 -1.6 -1.7 hypothetical protein (NCBI) compare
Rru_A3800 -1.6 -1.2 hypothetical protein (NCBI) compare
Rru_A2865 -1.5 -5.1 Peptidase M24 (NCBI) compare
Rru_A0596 -1.5 -2.1 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI) compare
Rru_A0454 -1.5 -1.6 Leucyl aminopeptidase (NCBI) compare
Rru_A1608 -1.4 -6.2 MscS Mechanosensitive ion channel (NCBI) compare
Rru_A1804 -1.4 -3.9 N-acetyltransferase (NCBI) compare
Rru_A3009 -1.4 -2.5 Aminotransferase class-III (NCBI) compare
Rru_A3537 -1.4 -1.4 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A1432 -1.4 -7.6 Nicotinate-nucleotide pyrophosphorylase (NCBI) compare
Rru_A0399 -1.4 -0.6 Phosphoesterase, PA-phosphatase related (NCBI) compare
Rru_A1572 -1.4 -2.3 Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI) compare
Rru_A3627 -1.4 -3.8 Cobyrinic acid a,c-diamide synthase (NCBI) compare
Rru_A2182 -1.4 -1.9 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A1552 -1.4 -1.4 Peptidase S16, ATP-dependent protease La (NCBI) compare
Rru_A3393 -1.3 -2.1 Penicillin-binding protein 1A (NCBI) compare
Rru_A2507 -1.3 -7.1 Orotate phosphoribosyl transferase (NCBI) compare
Rru_A2760 -1.3 -0.5 hypothetical protein (NCBI) compare
Rru_A2952 -1.3 -2.1 Methyltransferase small (NCBI) compare
Rru_A0700 -1.3 -0.8 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A0435 -1.3 -8.4 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A3766 -1.3 -2.6 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A1865 -1.3 -3.6 Dihydrodipicolinate synthase subfamily (NCBI) compare
Rru_A0021 -1.2 -1.1 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A3642 -1.2 -0.5 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A0671 -1.2 -3.3 cobalamin synthesis CobW protein (NCBI) compare
Rru_A1309 -1.2 -6.4 acetoacetyl-CoA reductase (NCBI) compare
Rru_A2479 -1.2 -5.5 Methylmalonyl-CoA mutase-like (NCBI) compare
Rru_A1999 -1.2 -1.2 hypothetical protein (NCBI) compare
Rru_A3602 -1.2 -1.3 Smr protein/MutS2-like (NCBI) compare
Rru_A1537 -1.2 -1.6 hypothetical protein (NCBI) compare
Rru_A0556 -1.2 -5.5 Formyltetrahydrofolate deformylase (NCBI) compare
Rru_A3687 -1.2 -3.7 Cobalt transport protein (NCBI) compare
Rru_A1470 -1.2 -2.0 hypothetical protein (NCBI) compare
Rru_B0050 -1.2 -2.7 dTDP-glucose 4,6-dehydratase (NCBI) compare
Rru_A0096 -1.2 -2.3 Secretion protein HlyD (NCBI) compare
Rru_A0023 -1.1 -1.9 hypothetical protein (NCBI) compare
Rru_A1678 -1.1 -2.9 Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) compare
Rru_A0625 -1.1 -1.6 hypothetical protein (NCBI) compare
Rru_A3688 -1.1 -4.2 ABC transporter component (NCBI) compare
Rru_A0484 -1.1 -4.3 hypothetical protein (NCBI) compare
Rru_A3191 -1.1 -4.7 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A1814 -1.1 -1.5 Carbon monoxide dehydrogenase subunit G (NCBI) compare
Rru_A1648 -1.1 -1.1 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A3382 -1.1 -3.4 Cobalamin biosynthesis protein CbiB (NCBI) compare
Rru_A3079 -1.1 -3.3 3-hydroxybutyryl-CoA dehydrogenase (NCBI) compare
Rru_A0670 -1.1 -1.4 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A1627 -1.1 -1.7 hypothetical protein (NCBI) compare
Rru_A2992 -1.1 -2.1 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A0265 -1.0 -2.6 Electron-transferring-flavoproteindehydrogenase (NCBI) compare
Rru_A3168 -1.0 -2.7 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A0963 -1.0 -1.9 MifU-like protein, Fe-S cluster formation (NCBI) compare
Rru_A0401 -1.0 -1.2 hypothetical protein (NCBI) compare
Rru_A2907 -1.0 -0.9 Anti-Sigma-factor antagonist (STAS) domain protein (NCBI) compare
Rru_A3398 -1.0 -1.0 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A0024 -1.0 -2.4 peptidase (NCBI) compare
Rru_A0573 -1.0 -3.4 hypothetical protein (NCBI) compare
Rru_A1265 -1.0 -3.2 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0668 -1.0 -1.5 Cobalamin-5-phosphate synthase CobS (NCBI) compare
Rru_A3801 -1.0 -1.0 Enoyl-CoA hydratase/isomerase (NCBI) compare
Rru_A1393 -1.0 -1.4 Nitrogenase (NCBI) compare
Rru_A3468 -1.0 -1.8 Transcriptional Regulator, AsnC family (NCBI) compare
Rru_A3285 -1.0 -1.1 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A0616 -1.0 -5.3 photosynthetic complex assembly protein (NCBI) compare
Rru_A2478 -1.0 -3.9 ArgK protein (NCBI) compare
Rru_B0049 -1.0 -0.9 dTDP-4-dehydrorhamnose reductase (NCBI) compare
Rru_A0041 -1.0 -0.9 Cytochrome c, class II (NCBI) compare
Rru_A3146 -1.0 -1.4 hypothetical protein (NCBI) compare
Rru_A1692 -0.9 -3.3 S-adenosylmethionine decarboxylase related (NCBI) compare
Rru_A3169 -0.9 -2.2 ABC transporter component (NCBI) compare
Rru_A2986 -0.9 -3.1 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A0398 -0.9 -1.5 Thiol-disulfide isomerase and thioredoxins-like (NCBI) compare
Rru_A3166 -0.9 -3.8 extracellular solute-binding protein, family 5 (NCBI) compare
Rru_A1138 -0.9 -2.1 ABC transporter component (NCBI) compare
Rru_A2303 -0.9 -1.1 Deoxyribose-phosphate aldolase (NCBI) compare
Rru_A2095 -0.9 -2.7 Secretion protein HlyD (NCBI) compare
Rru_A1529 -0.9 -3.6 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A3359 -0.9 -2.9 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A3167 -0.9 -1.9 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A3748 -0.9 -1.5 hypothetical protein (NCBI) compare
Rru_A2994 -0.9 -1.3 hypothetical protein (NCBI) compare
Rru_A0207 -0.9 -3.0 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A0128 -0.9 -1.9 Na+/H+ antiporter NhaA (NCBI) compare
Rru_A2616 -0.9 -5.1 Histone deacetylase superfamily (NCBI) compare
Rru_A3384 -0.9 -2.4 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A1677 -0.9 -2.2 Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) compare
Rru_A0847 -0.9 -2.7 PepSY-associated TM helix (NCBI) compare
Rru_A1174 -0.8 -2.5 Endoribonuclease L-PSP (NCBI) compare
Rru_A1112 -0.8 -0.6 hypothetical protein (NCBI) compare
Rru_A1255 -0.8 -2.3 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A1867 -0.8 -0.8 Protein of unknown function DUF583 (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in carbon source experiments

For carbon source Valeric acid across organisms