Experiment set3IT020 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 2; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.2 -5.0 NUDIX domain-containing protein compare
ABZR87_RS08630 -6.1 -5.9 dihydroorotase compare
ABZR87_RS14115 -4.7 -3.6 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS04975 -4.4 -3.1 peptide deformylase compare
ABZR87_RS00435 -4.3 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13705 -4.3 -2.9 integration host factor subunit alpha compare
ABZR87_RS05100 -4.2 -6.5 RNA polymerase-binding protein DksA compare
ABZR87_RS08695 -4.1 -20.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS01255 -4.0 -12.4 LysR substrate-binding domain-containing protein compare
ABZR87_RS09895 -3.9 -2.7 DUF1841 family protein compare
ABZR87_RS05305 -3.9 -13.2 TetR family transcriptional regulator compare
ABZR87_RS08795 -3.9 -4.6 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS07050 -3.8 -2.6 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS11245 -3.8 -5.8 translational GTPase TypA compare
ABZR87_RS07510 -3.7 -5.0 LysR family transcriptional regulator compare
ABZR87_RS22920 -3.6 -6.5 phosphogluconate dehydratase compare
ABZR87_RS16170 -3.5 -3.4 argininosuccinate lyase compare
ABZR87_RS08970 -3.5 -9.3 protein TolQ compare
ABZR87_RS06400 -3.4 -8.6 response regulator transcription factor compare
ABZR87_RS04865 -3.3 -4.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS13175 -3.3 -2.3 tRNA-Leu compare
ABZR87_RS10980 -3.1 -1.8 tRNA-Leu compare
ABZR87_RS12785 -3.1 -5.5 endopeptidase La compare
ABZR87_RS08985 -3.0 -13.5 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS04945 -3.0 -3.5 DUF4390 domain-containing protein compare
ABZR87_RS06385 -2.9 -10.5 CHASE3 domain-containing protein compare
ABZR87_RS05065 -2.9 -4.0 tyrosine recombinase XerC compare
ABZR87_RS17145 -2.8 -12.3 AMP nucleosidase compare
ABZR87_RS14375 -2.7 -4.1 fumarate hydratase compare
ABZR87_RS08700 -2.7 -8.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS08980 -2.7 -5.3 cell envelope integrity protein TolA compare
ABZR87_RS04940 -2.7 -7.2 PAS domain-containing sensor histidine kinase compare
ABZR87_RS08990 -2.7 -5.1 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS09615 -2.7 -1.8 50S ribosomal protein L19 compare
ABZR87_RS09935 -2.7 -2.6 amino acid aminotransferase compare
ABZR87_RS02640 -2.6 -11.1 diaminopimelate decarboxylase compare
ABZR87_RS11330 -2.6 -4.7 transcriptional repressor LexA compare
ABZR87_RS16185 -2.6 -3.1 dCTP deaminase compare
ABZR87_RS08625 -2.6 -1.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS06745 -2.6 -6.3 S41 family peptidase compare
ABZR87_RS01885 -2.6 -4.3 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS07035 -2.6 -8.0 RNase adapter RapZ compare
ABZR87_RS13300 -2.6 -7.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS01615 -2.5 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS07730 -2.5 -2.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS02440 -2.4 -9.6 twin-arginine translocase subunit TatC compare
ABZR87_RS01245 -2.4 -3.3 Dps family protein compare
ABZR87_RS07625 -2.4 -2.3 Holliday junction branch migration protein RuvA compare
ABZR87_RS21950 -2.4 -7.1 hypothetical protein compare
ABZR87_RS16960 -2.4 -4.2 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS02590 -2.4 -9.3 3-dehydroquinate synthase compare
ABZR87_RS13475 -2.3 -8.4 PAS domain S-box protein compare
ABZR87_RS12790 -2.3 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS02850 -2.3 -3.2 elongation factor Tu compare
ABZR87_RS07635 -2.3 -1.6 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS07355 -2.3 -7.4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS13790 -2.2 -8.3 chorismate synthase compare
ABZR87_RS13290 -2.2 -5.7 3-ketoacyl-ACP reductase compare
ABZR87_RS02550 -2.2 -5.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS02555 -2.2 -6.9 ABC transporter ATP-binding protein compare
ABZR87_RS08660 -2.2 -4.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS12965 -2.2 -3.7 tail protein X compare
ABZR87_RS00970 -2.1 -1.5 molecular chaperone DnaJ compare
ABZR87_RS05590 -2.1 -1.4 orotate phosphoribosyltransferase compare
ABZR87_RS15715 -2.1 -7.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS09465 -2.1 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS07620 -2.0 -3.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS04995 -2.0 -2.7 DNA topoisomerase III compare
ABZR87_RS10085 -2.0 -2.1 Rne/Rng family ribonuclease compare
ABZR87_RS01675 -2.0 -1.9 carbohydrate kinase family protein compare
ABZR87_RS14965 -2.0 -3.3 DUF3619 family protein compare
ABZR87_RS14950 -1.9 -1.9 acetolactate synthase small subunit compare
ABZR87_RS01225 -1.9 -3.6 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS10120 -1.9 -1.8 YceD family protein compare
ABZR87_RS14605 -1.9 -10.9 aconitate hydratase AcnA compare
ABZR87_RS10785 -1.9 -3.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS11790 -1.9 -2.5 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS00795 -1.9 -3.5 site-specific tyrosine recombinase XerD compare
ABZR87_RS14190 -1.8 -8.2 DUF2589 domain-containing protein compare
ABZR87_RS01685 -1.8 -7.5 histone H1-like DNA-binding protein compare
ABZR87_RS10195 -1.8 -3.2 signal peptidase I compare
ABZR87_RS00835 -1.8 -1.7 argininosuccinate synthase compare
ABZR87_RS11940 -1.8 -2.4 SsrA-binding protein SmpB compare
ABZR87_RS06350 -1.8 -7.3 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS10780 -1.8 -2.4 PD-(D/E)XK nuclease family protein compare
ABZR87_RS17235 -1.8 -4.1 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS12795 -1.7 -4.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS11420 -1.7 -1.7 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS14505 -1.7 -3.2 phosphoribosylanthranilate isomerase compare
ABZR87_RS08640 -1.7 -4.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS06645 -1.7 -1.7 TlpA disulfide reductase family protein compare
ABZR87_RS10170 -1.7 -3.2 RseA family anti-sigma factor compare
ABZR87_RS10175 -1.7 -4.6 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02595 -1.7 -8.1 shikimate kinase compare
ABZR87_RS16055 -1.6 -5.9 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS10610 -1.6 -1.1 inositol monophosphatase family protein compare
ABZR87_RS02320 -1.6 -2.7 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS02375 -1.6 -8.5 cytochrome c1 compare
ABZR87_RS12145 -1.6 -4.2 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS09625 -1.6 -7.7 CobD/CbiB family protein compare
ABZR87_RS06705 -1.6 -9.8 glutamate--cysteine ligase compare
ABZR87_RS11435 -1.6 -2.8 Mth938-like domain-containing protein compare
ABZR87_RS01980 -1.6 -2.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS01275 -1.6 -5.0 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS15705 -1.6 -3.8 UvrD-helicase domain-containing protein compare
ABZR87_RS12955 -1.6 -3.5 terminase endonuclease subunit compare
ABZR87_RS16720 -1.6 -1.7 collagen-like triple helix repeat-containing protein compare
ABZR87_RS06405 -1.6 -1.4 hypothetical protein compare
ABZR87_RS01035 -1.6 -3.1 histidine utilization repressor compare
ABZR87_RS20555 -1.6 -5.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS06715 -1.6 -5.0 PTS sugar transporter subunit IIA compare
ABZR87_RS07005 -1.6 -1.7 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS21815 -1.6 -1.3 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS02445 -1.6 -3.0 Sec-independent protein translocase protein TatB compare
ABZR87_RS04105 -1.6 -4.1 ATP synthase subunit I compare
ABZR87_RS14970 -1.5 -2.4 DUF3106 domain-containing protein compare
ABZR87_RS11125 -1.5 -5.0 cell division protein ZapE compare
ABZR87_RS02380 -1.5 -7.8 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS04125 -1.5 -3.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS02540 -1.5 -5.8 VacJ family lipoprotein compare
ABZR87_RS02655 -1.5 -5.8 anti-sigma factor compare
ABZR87_RS02155 -1.5 -5.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS05350 -1.5 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS08650 -1.5 -6.8 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS11760 -1.5 -1.3 membrane protein compare
ABZR87_RS01645 -1.5 -2.7 type II 3-dehydroquinate dehydratase compare
ABZR87_RS09000 -1.5 -6.5 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS01280 -1.5 -4.9 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS02545 -1.4 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS07055 -1.4 -8.0 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS13285 -1.4 -8.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS14500 -1.4 -8.3 tryptophan synthase subunit beta compare
ABZR87_RS17650 -1.4 -4.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS10565 -1.4 -1.3 cupin domain-containing protein compare
ABZR87_RS14530 -1.4 -6.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS16125 -1.4 -5.0 heme biosynthesis protein HemY compare
ABZR87_RS12800 -1.4 -1.9 trigger factor compare
ABZR87_RS12950 -1.4 -4.6 phage major capsid protein, P2 family compare
ABZR87_RS15440 -1.4 -0.9 ribonuclease G compare
ABZR87_RS02160 -1.3 -4.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS05060 -1.3 -2.7 DUF484 family protein compare
ABZR87_RS05170 -1.3 -0.9 acetylglutamate kinase compare
ABZR87_RS07380 -1.3 -8.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14490 -1.3 -5.6 tryptophan synthase subunit alpha compare
ABZR87_RS06355 -1.3 -5.5 SPOR domain-containing protein compare
ABZR87_RS00440 -1.3 -6.6 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS10900 -1.3 -3.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS13250 -1.3 -1.3 phosphoserine phosphatase SerB compare
ABZR87_RS04880 -1.3 -6.3 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS22300 -1.2 -1.2 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS04270 -1.2 -3.4 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS02220 -1.2 -5.5 redox-regulated ATPase YchF compare
ABZR87_RS02565 -1.2 -3.0 glutamate synthase subunit beta compare
ABZR87_RS16735 -1.2 -8.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS12150 -1.2 -2.5 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS01760 -1.2 -1.1 PP0621 family protein compare
ABZR87_RS10395 -1.2 -4.1 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS12970 -1.2 -1.8 putative holin compare
ABZR87_RS18695 -1.2 -5.3 sugar-binding transcriptional regulator compare
ABZR87_RS10650 -1.2 -4.0 DNA-3-methyladenine glycosylase compare
ABZR87_RS17980 -1.2 -5.2 CheR family methyltransferase compare
ABZR87_RS10240 -1.2 -0.8 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS01285 -1.2 -1.3 preprotein translocase subunit YajC compare
ABZR87_RS10930 -1.2 -1.6 outer membrane protein assembly factor BamB compare
ABZR87_RS07360 -1.2 -6.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02485 -1.2 -1.2 MarC family protein compare
ABZR87_RS11195 -1.1 -5.1 pseudouridine synthase compare
ABZR87_RS22035 -1.1 -2.1 hypothetical protein compare
ABZR87_RS03435 -1.1 -5.1 type II secretion system protein GspL compare
ABZR87_RS05200 -1.1 -8.4 homoserine O-acetyltransferase compare
ABZR87_RS09445 -1.1 -5.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02535 -1.1 -3.6 phospholipid-binding protein MlaC compare
ABZR87_RS13645 -1.1 -1.0 hypothetical protein compare
ABZR87_RS02570 -1.1 -9.1 glutamate synthase-related protein compare
ABZR87_RS18190 -1.1 -1.5 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS05570 -1.1 -4.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS13150 -1.1 -3.3 hypothetical protein compare
ABZR87_RS04265 -1.1 -4.6 phenylalanine 4-monooxygenase compare
ABZR87_RS03915 -1.1 -6.2 UvrD-helicase domain-containing protein compare
ABZR87_RS13500 -1.1 -2.7 homoprotocatechuate degradation operon regulator HpaR compare
ABZR87_RS14575 -1.1 -2.7 GntR family transcriptional regulator compare
ABZR87_RS05205 -1.1 -3.4 methionine biosynthesis protein MetW compare
ABZR87_RS07965 -1.1 -3.6 recombinase RecA compare
ABZR87_RS07215 -1.1 -2.4 hotdog family protein compare
ABZR87_RS16270 -1.1 -1.2 cold-shock protein compare
ABZR87_RS02385 -1.1 -2.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS03430 -1.1 -6.0 type II secretion system minor pseudopilin GspK compare
ABZR87_RS21955 -1.1 -4.7 hypothetical protein compare
ABZR87_RS17310 -1.0 -3.7 PadR family transcriptional regulator compare
ABZR87_RS00340 -1.0 -1.1 50S ribosomal protein L33 compare
ABZR87_RS02145 -1.0 -1.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS20880 -1.0 -4.6 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS14995 -1.0 -1.6 diacylglycerol kinase compare
ABZR87_RS00285 -1.0 -0.7 acetylornithine transaminase compare
ABZR87_RS13415 -1.0 -3.4 IclR family transcriptional regulator compare
ABZR87_RS08585 -1.0 -2.1 chemotaxis protein CheW compare
ABZR87_RS05140 -1.0 -2.8 ATP-binding protein compare
ABZR87_RS03425 -1.0 -5.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS11815 -1.0 -4.8 [protein-PII] uridylyltransferase compare
ABZR87_RS01085 -1.0 -2.9 rhombosortase compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in soil experiments