Experiment set3IT019 for Rhodospirillum rubrum S1H

Compare to:

Valeric acid 25 mM; anaerobic

200 most important genes:

  gene name fitness t score description  
Rru_A3623 -6.5 -0.9 hypothetical protein (NCBI) compare
Rru_A2370 -6.4 -1.7 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A1735 -5.8 -0.8 hypothetical protein (NCBI) compare
Rru_B0005 -5.8 -0.8 Glycosyl transferase (NCBI) compare
Rru_A3626 -5.7 -1.5 Glucose inhibited division protein (NCBI) compare
Rru_A3800 -5.4 -1.2 hypothetical protein (NCBI) compare
Rru_A3149 -5.4 -0.7 Protein of unknown function DUF214 (NCBI) compare
Rru_A0599 -5.4 -1.2 Phosphate ABC transporter, permease protein PstC (NCBI) compare
Rru_A0394 -5.2 -3.1 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A3341 -4.7 -1.9 Acetylglutamate kinase (NCBI) compare
Rru_A2951 -4.6 -0.9 hypothetical protein (NCBI) compare
Rru_A0894 -4.4 -2.2 stress protein (NCBI) compare
Rru_A3276 -4.4 -4.0 Ornithine carbamoyltransferase (NCBI) compare
Rru_A0668 -4.4 -2.4 Cobalamin-5-phosphate synthase CobS (NCBI) compare
Rru_A2760 -4.2 -0.5 hypothetical protein (NCBI) compare
Rru_A0596 -4.0 -3.7 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI) compare
Rru_A2983 -4.0 -0.7 Polyprenyl synthetase (NCBI) compare
Rru_A3267 -3.9 -6.4 Methionine biosynthesis MetW (NCBI) compare
Rru_A1189 -3.7 -11.9 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A0397 -3.7 -6.0 Argininosuccinate lyase (NCBI) compare
Rru_A1239 -3.7 -0.9 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A2029 -3.7 -0.7 Serine O-acetyltransferase (NCBI) compare
Rru_A2847 -3.6 -0.7 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A1191 -3.6 -8.4 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A2421 -3.5 -6.0 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A1837 -3.4 -3.3 Porphobilinogen synthase (NCBI) compare
Rru_A3425 -3.3 -5.3 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A3594 -3.3 -3.1 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A2415 -3.3 -1.4 hypothetical protein (NCBI) compare
Rru_A1897 -3.3 -4.5 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A2100 -3.2 -4.2 Protein of unknown function DUF81 (NCBI) compare
Rru_A2981 -3.2 -4.5 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A1530 -3.2 -13.0 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A1894 -3.1 -3.9 heavy metal translocating P-type ATPase (NCBI) compare
Rru_A3704 -3.1 -6.3 Periplasmic solute binding protein (NCBI) compare
Rru_A0908 -3.1 -1.0 microcompartments protein (NCBI) compare
Rru_A2085 -3.0 -2.0 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) compare
Rru_A1896 -3.0 -6.3 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A2886 -3.0 -16.8 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A3266 -3.0 -8.1 Homoserine O-acetyltransferase (NCBI) compare
Rru_A3162 -2.9 -10.8 Prephenate dehydratase (NCBI) compare
Rru_A3380 -2.9 -2.3 hypothetical protein (NCBI) compare
Rru_A3214 -2.9 -8.7 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A1777 -2.8 -3.2 Beta-N-acetylhexosaminidase (NCBI) compare
Rru_A1691 -2.8 -6.6 Spermine synthase (NCBI) compare
Rru_A3502 -2.8 -0.5 hypothetical protein (NCBI) compare
Rru_A2771 -2.8 -3.9 Histidinol dehydrogenase (NCBI) compare
Rru_A1786 -2.8 -14.4 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A2772 -2.8 -1.7 ATP phosphoribosyltransferase (NCBI) compare
Rru_A3687 -2.8 -3.7 Cobalt transport protein (NCBI) compare
Rru_A2346 -2.7 -1.1 hypothetical protein (NCBI) compare
Rru_A1620 -2.7 -0.6 hypothetical protein (NCBI) compare
Rru_A3751 -2.7 -8.1 Argininosuccinate synthase (NCBI) compare
Rru_A0617 -2.7 -2.5 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A2524 -2.6 -8.1 Peptidase U32 (NCBI) compare
Rru_A1827 -2.6 -7.9 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A3748 -2.6 -3.0 hypothetical protein (NCBI) compare
Rru_A2902 -2.6 -0.6 hypothetical protein (NCBI) compare
Rru_A0486 -2.5 -6.1 von Willebrand factor, type A (NCBI) compare
Rru_A3277 -2.5 -4.3 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A2975 -2.5 -7.2 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A0053 -2.5 -8.8 Carboxyl transferase (NCBI) compare
Rru_A3428 -2.5 -8.0 Tryptophan synthase (NCBI) compare
Rru_A0469 -2.5 -7.4 Ketol-acid reductoisomerase (NCBI) compare
Rru_A3642 -2.4 -0.5 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A1572 -2.4 -1.9 Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI) compare
Rru_A0627 -2.4 -5.8 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A0494 -2.4 -3.3 Squalene/phytoene synthase (NCBI) compare
Rru_A1865 -2.4 -3.7 Dihydrodipicolinate synthase subfamily (NCBI) compare
Rru_A0537 -2.4 -2.8 Protein of unknown function DUF955 (NCBI) compare
Rru_A0467 -2.4 -9.7 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A3547 -2.3 -2.8 hypothetical protein (NCBI) compare
Rru_A0052 -2.3 -10.7 Biotin carboxylase (NCBI) compare
Rru_A2525 -2.3 -8.0 Peptidase U32 (NCBI) compare
Rru_A2404 -2.3 -7.0 Phosphoribulokinase (NCBI) compare
Rru_A3264 -2.3 -7.0 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3688 -2.2 -5.2 ABC transporter component (NCBI) compare
Rru_A0683 -2.2 -0.4 3-deoxy-7-phosphoheptulonate synthase (NCBI) compare
Rru_A3227 -2.2 -6.4 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A3766 -2.2 -2.8 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A3427 -2.2 -10.5 Tryptophan synthase, beta chain (NCBI) compare
Rru_A1804 -2.2 -4.0 N-acetyltransferase (NCBI) compare
Rru_A2936 -2.2 -7.0 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A3558 -2.1 -1.0 Protein of unknown function UPF0005 (NCBI) compare
Rru_A2154 -2.1 -1.7 Biopolymer transport protein ExbD/TolR (NCBI) compare
Rru_A0493 -2.1 -6.2 Phytoene desaturase (NCBI) compare
Rru_A0624 -2.1 -6.7 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A0514 -2.1 -7.0 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A2400 -2.1 -6.4 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A0671 -2.0 -3.8 cobalamin synthesis CobW protein (NCBI) compare
Rru_A3533 -2.0 -4.7 hypothetical protein (NCBI) compare
Rru_A1884 -2.0 -1.8 Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI) compare
Rru_A1439 -2.0 -1.1 Putative FecR (NCBI) compare
Rru_A0181 -2.0 -1.3 hypothetical protein (NCBI) compare
Rru_A1895 -2.0 -1.2 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A0369 -2.0 -3.0 ATPase associated with various cellular activities, AAA_3 (NCBI) compare
Rru_A0515 -2.0 -1.9 HAD-superfamily subfamily IIA hydrolase (NCBI) compare
Rru_A2885 -2.0 -6.2 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A2183 -2.0 -5.3 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2181 -2.0 -9.1 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A2163 -1.9 -1.4 conserved hypothetical protein RP631 (NCBI) compare
Rru_A2549 -1.9 -3.8 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A1190 -1.9 -1.0 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A1767 -1.9 -1.1 peptidase M23B (NCBI) compare
Rru_A0712 -1.9 -1.3 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A3079 -1.9 -4.1 3-hydroxybutyryl-CoA dehydrogenase (NCBI) compare
Rru_A1552 -1.9 -1.6 Peptidase S16, ATP-dependent protease La (NCBI) compare
Rru_A1788 -1.9 -1.2 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A1105 -1.9 -2.6 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A1218 -1.9 -1.5 phage shock protein A, PspA (NCBI) compare
Rru_A3369 -1.9 -1.2 hypothetical protein (NCBI) compare
Rru_A1890 -1.8 -1.4 hypothetical protein (NCBI) compare
Rru_A1433 -1.8 -2.9 L-aspartate oxidase (NCBI) compare
Rru_A1928 -1.8 -7.2 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A0621 -1.8 -8.8 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A0232 -1.8 -3.0 hypothetical protein (NCBI) compare
Rru_A3548 -1.8 -5.9 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A0334 -1.8 -2.2 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A2416 -1.8 -1.3 hypothetical protein (NCBI) compare
Rru_A2363 -1.7 -4.2 Endonuclease/exonuclease/phosphatase (NCBI) compare
Rru_A0643 -1.7 -2.9 Protein of unknown function DUF152 (NCBI) compare
Rru_A0963 -1.7 -1.3 MifU-like protein, Fe-S cluster formation (NCBI) compare
Rru_A0435 -1.7 -8.0 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A0224 -1.7 -1.8 Protein of unknown function DUF160 (NCBI) compare
Rru_A3009 -1.7 -2.2 Aminotransferase class-III (NCBI) compare
Rru_A2989 -1.7 -1.9 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A3386 -1.7 -1.8 BioY protein (NCBI) compare
Rru_A0100 -1.7 -0.5 hypothetical protein (NCBI) compare
Rru_A1019 -1.7 -2.4 FAD dependent oxidoreductase (NCBI) compare
Rru_A3195 -1.7 -1.8 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A0468 -1.7 -2.4 Acetolactate synthase, small subunit (NCBI) compare
Rru_A1048 -1.7 -0.9 Protein of unknown function DUF465 (NCBI) compare
Rru_A0058 -1.7 -0.5 Dihydrokaempferol 4-reductase (NCBI) compare
Rru_A2935 -1.7 -3.0 PAS/PAC Sensor Hybrid Histidine Kinase (NCBI) compare
Rru_A1064 -1.6 -1.2 Plasmid maintenance system killer (NCBI) compare
Rru_A3150 -1.6 -1.7 ABC transporter component (NCBI) compare
Rru_A3165 -1.6 -4.3 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A2974 -1.6 -5.3 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A3157 -1.6 -3.0 hypothetical protein (NCBI) compare
Rru_A1441 -1.6 -1.2 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A2403 -1.6 -6.4 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A0274 -1.6 -2.4 Acetyl-CoA C-acetyltransferase (NCBI) compare
Rru_A1536 -1.6 -2.7 UvrD/REP helicase (NCBI) compare
Rru_A0892 -1.6 -3.1 stress protein (NCBI) compare
Rru_A1955 -1.6 -0.9 Phosphoribosyltransferase (NCBI) compare
Rru_A3393 -1.5 -2.2 Penicillin-binding protein 1A (NCBI) compare
Rru_A2497 -1.5 -3.0 Peptide chain release factor 3 (NCBI) compare
Rru_A2391 -1.5 -1.5 hypothetical protein (NCBI) compare
Rru_A2979 -1.5 -4.4 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A0622 -1.5 -4.3 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A2870 -1.5 -3.4 integral membrane protein TerC (NCBI) compare
Rru_A3797 -1.5 -2.9 2-polyprenylphenol 6-hydroxylase (NCBI) compare
Rru_A0665 -1.5 -0.8 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A0654 -1.5 -2.3 Multiple antibiotic resistance (MarC)-related proteins (NCBI) compare
Rru_A0616 -1.5 -3.8 photosynthetic complex assembly protein (NCBI) compare
Rru_A0620 -1.5 -3.5 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A2919 -1.4 -1.9 hypothetical protein (NCBI) compare
Rru_A3367 -1.4 -1.4 Cob(I)alamin adenosyltransferase (NCBI) compare
Rru_A0752 -1.4 -0.7 hypothetical protein (NCBI) compare
Rru_A2480 -1.4 -1.3 Methylmalonyl-CoA mutase (NCBI) compare
Rru_A0556 -1.4 -4.0 Formyltetrahydrofolate deformylase (NCBI) compare
Rru_A3010 -1.4 -3.9 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2925 -1.4 -1.4 Major facilitator superfamily MFS_1 (NCBI) compare
Rru_A0372 -1.4 -2.5 hypothetical protein (NCBI) compare
Rru_A2167 -1.4 -5.0 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A0770 -1.4 -2.7 Peptidase M23B (NCBI) compare
Rru_A1417 -1.4 -2.5 thioredoxin-disulfide reductase (NCBI) compare
Rru_A2182 -1.4 -1.3 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2038 -1.4 -4.3 Glutamate-ammonia-ligase adenylyltransferase (NCBI) compare
Rru_A2986 -1.3 -2.2 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A0753 -1.3 -4.1 Chaperone clpB (NCBI) compare
Rru_A1926 -1.3 -1.6 hypothetical protein (NCBI) compare
Rru_A2865 -1.3 -2.7 Peptidase M24 (NCBI) compare
Rru_A0137 -1.3 -3.3 TRAP transporter solute receptor, TAXI family (NCBI) compare
Rru_A0404 -1.3 -9.0 Amidophosphoribosyl transferase (NCBI) compare
Rru_A0574 -1.3 -0.7 Carboxylyase-related protein (NCBI) compare
Rru_A3368 -1.3 -1.7 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A0206 -1.3 -1.4 Cobalt chelatase, pCobS small subunit (NCBI) compare
Rru_A2773 -1.3 -1.6 hypothetical protein (NCBI) compare
Rru_A1636 -1.3 -1.4 NADH-ubiquinone oxidoreductase, chain 4L (NCBI) compare
Rru_A3190 -1.3 -1.1 Aspartate carbamoyltransferase (NCBI) compare
Rru_A0155 -1.3 -1.1 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A0150 -1.3 -1.4 hypothetical protein (NCBI) compare
Rru_A2980 -1.3 -3.5 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A2703 -1.3 -2.1 RNA methyltransferase TrmH, group 3 (NCBI) compare
Rru_A2099 -1.3 -3.7 surface antigen (NCBI) compare
Rru_A3399 -1.3 -1.3 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A0663 -1.2 -0.7 Cold-shock DNA-binding domain protein (NCBI) compare
Rru_A3328 -1.2 -2.5 OmpA/MotB (NCBI) compare
Rru_A1001 -1.2 -2.0 ABC transporter component (NCBI) compare
Rru_A3731 -1.2 -2.8 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A0032 -1.2 -1.7 TPR repeat (NCBI) compare
Rru_A1741 -1.2 -1.9 Phage integrase (NCBI) compare
Rru_A3366 -1.2 -4.6 Cobaltochelatase, CobN subunit (NCBI) compare
Rru_A0922 -1.2 -0.7 Protein of unknown function DUF1044 (NCBI) compare
Rru_A2507 -1.2 -5.0 Orotate phosphoribosyl transferase (NCBI) compare
Rru_A2393 -1.2 -1.3 hypothetical protein (NCBI) compare
Rru_A2631 -1.2 -1.5 hypothetical protein (NCBI) compare
Rru_A2398 -1.2 -6.9 Pyruvate-ferredoxin (flavodoxin) oxidoreductase (NCBI) compare
Rru_A2463 -1.2 -2.3 N-formylglutamate amidohydrolase (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in carbon source experiments

For carbon source Valeric acid across organisms