Experiment set3IT019 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07345 -4.0 -11.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS01175 -3.8 -12.7 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03315 -3.8 -3.0 ferrous iron transport protein A compare
MMP_RS06685 -3.7 -20.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS03435 -3.7 -3.6 ketol-acid reductoisomerase compare
MMP_RS06680 -3.6 -25.2 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06720 -3.5 -17.4 response regulator transcription factor compare
MMP_RS06715 -3.4 -24.7 cache domain-containing protein compare
MMP_RS05500 -3.3 -14.5 2-isopropylmalate synthase compare
MMP_RS06345 -3.3 -19.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06730 -3.2 -2.2 phosphopantothenate/pantothenate synthetase compare
MMP_RS06700 -3.2 -19.6 hypothetical protein compare
MMP_RS06355 -3.2 -3.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07845 -3.1 -5.5 LL-diaminopimelate aminotransferase compare
MMP_RS06705 -3.1 -12.2 formate/nitrite transporter family protein compare
MMP_RS03450 -3.0 -3.1 glycine synthesis protein GlyXS (from data) compare
MMP_RS03015 -3.0 -14.6 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -3.0 -12.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS02010 -2.9 -14.1 PHP domain-containing protein compare
MMP_RS06350 -2.9 -11.7 HesA/MoeB/ThiF family protein compare
MMP_RS01455 -2.8 -15.0 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS04215 -2.7 -14.9 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS07185 -2.7 -17.2 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05930 -2.7 -5.3 3-isopropylmalate dehydratase large subunit compare
MMP_RS06340 -2.6 -13.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06375 -2.6 -13.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS00750 -2.6 -4.4 fumarate hydratase compare
MMP_RS03475 -2.6 -1.6 hypothetical protein compare
MMP_RS08790 -2.6 -4.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS07635 -2.5 -12.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00895 -2.4 -6.6 hypothetical protein compare
MMP_RS07445 -2.4 -8.8 helix-turn-helix domain-containing protein compare
MMP_RS01985 -2.4 -12.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04615 -2.4 -4.9 PDGLE domain-containing protein compare
MMP_RS03035 -2.4 -5.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05875 -2.3 -12.8 hydroxyethylthiazole kinase compare
MMP_RS04585 -2.3 -12.4 AIR synthase related protein compare
MMP_RS08820 -2.3 -7.3 hypothetical protein compare
MMP_RS06925 -2.3 -4.0 ribonuclease VapC4 compare
MMP_RS06270 -2.3 -9.8 TIGR00300 family protein compare
MMP_RS05550 -2.3 -1.6 cation:proton antiporter compare
MMP_RS03640 -2.3 -4.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02195 -2.2 -8.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05425 -2.2 -6.0 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01005 -2.2 -3.6 riboflavin synthase compare
MMP_RS01500 -2.2 -4.4 CBS domain-containing protein compare
MMP_RS01755 -2.2 -3.0 DUF2097 domain-containing protein compare
MMP_RS06630 -2.2 -2.3 UPF0058 family protein compare
MMP_RS04605 -2.1 -7.6 cobalt ECF transporter T component CbiQ compare
MMP_RS00685 -2.1 -7.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08330 -2.1 -7.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS01225 -2.1 -8.0 DUF5379 domain-containing protein compare
MMP_RS03400 -2.1 -5.4 archease compare
MMP_RS05265 -2.1 -3.9 2-isopropylmalate synthase compare
MMP_RS05285 -2.1 -14.7 MMPL family transporter compare
MMP_RS05100 -2.1 -17.4 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS06625 -2.0 -4.1 DNA primase compare
MMP_RS07735 -2.0 -1.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05555 -2.0 -2.7 DUF4040 domain-containing protein compare
MMP_RS06295 -2.0 -9.0 methanogenesis marker 14 protein compare
MMP_RS06105 -2.0 -10.2 hydrogenase maturation peptidase HycI compare
MMP_RS06885 -2.0 -5.3 50S ribosome-binding GTPase compare
MMP_RS01545 -2.0 -2.6 CBS domain-containing protein compare
MMP_RS04620 -2.0 -11.4 cobalt transporter CbiM compare
MMP_RS08460 -2.0 -3.6 proteasome-activating nucleotidase compare
MMP_RS02355 -2.0 -6.8 30S ribosomal protein S27ae compare
MMP_RS07580 -1.9 -6.1 DUF356 domain-containing protein compare
MMP_RS01830 -1.9 -3.8 tRNA-Val compare
MMP_RS05090 -1.9 -10.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS02345 -1.9 -3.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03025 -1.9 -5.6 molybdenum cofactor guanylyltransferase compare
MMP_RS09020 -1.9 -1.7 hypothetical protein compare
MMP_RS01700 -1.9 -2.2 dihydroxy-acid dehydratase compare
MMP_RS07730 -1.9 -2.9 pyruvate synthase subunit beta compare
MMP_RS01610 -1.9 -6.1 hypothetical protein compare
MMP_RS03600 -1.9 -3.6 triose-phosphate isomerase compare
MMP_RS00300 -1.9 -1.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05075 -1.8 -14.5 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS05920 -1.8 -1.5 50S ribosomal protein L37e compare
MMP_RS05070 -1.8 -10.2 4Fe-4S dicluster domain-containing protein compare
MMP_RS05085 -1.8 -10.8 AAA family ATPase compare
MMP_RS05095 -1.8 -11.6 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS04685 -1.8 -4.4 DUF126 domain-containing protein compare
MMP_RS05060 -1.8 -11.9 AAA family ATPase compare
MMP_RS05080 -1.8 -11.8 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS02135 -1.8 -8.7 DUF5612 domain-containing protein compare
MMP_RS08745 -1.7 -5.7 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05280 -1.7 -12.1 COG1361 S-layer family protein compare
MMP_RS01220 -1.7 -8.5 hypothetical protein compare
MMP_RS05540 -1.7 -3.7 hypothetical protein compare
MMP_RS07545 -1.7 -1.6 HTH domain-containing protein compare
MMP_RS06120 -1.7 -3.4 UPF0147 family protein compare
MMP_RS06400 -1.7 -3.3 4Fe-4S binding protein compare
MMP_RS08320 -1.7 -7.4 molybdopterin molybdotransferase MoeA compare
MMP_RS08720 -1.6 -3.0 4Fe-4S binding protein compare
MMP_RS01385 -1.6 -1.4 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08715 -1.6 -2.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08240 -1.6 -8.9 methanogenesis marker 16 metalloprotein compare
MMP_RS05055 -1.6 -12.6 DUF166 domain-containing protein compare
MMP_RS03140 -1.6 -11.2 hypothetical protein compare
MMP_RS02800 -1.6 -6.0 nucleotidyltransferase domain-containing protein compare
MMP_RS05345 -1.6 -8.6 hypothetical protein compare
MMP_RS04775 -1.6 -5.4 adenosylhomocysteinase compare
MMP_RS03700 -1.6 -9.0 sodium:proton antiporter compare
MMP_RS06200 -1.5 -9.4 M24 family metallopeptidase compare
MMP_RS07555 -1.5 -1.3 monovalent cation/H+ antiporter subunit E compare
MMP_RS06285 -1.5 -2.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08760 -1.5 -1.9 hypothetical protein compare
MMP_RS04710 -1.5 -2.7 hypothetical protein compare
MMP_RS03145 -1.5 -10.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS02190 -1.5 -3.5 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS05065 -1.5 -6.2 CooT family nickel-binding protein compare
MMP_RS05925 -1.4 -5.6 small nuclear ribonucleoprotein compare
MMP_RS00305 -1.4 -2.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS02280 -1.4 -1.5 DUF211 domain-containing protein compare
MMP_RS08635 -1.4 -3.0 UbiA family prenyltransferase compare
MMP_RS08300 -1.4 -2.0 metal-sulfur cluster assembly factor compare
MMP_RS00060 -1.4 -1.4 3-dehydroquinate synthase II compare
MMP_RS06475 -1.4 -5.6 FAD-dependent oxidoreductase compare
MMP_RS00115 -1.4 -11.0 radical SAM protein compare
MMP_RS00295 -1.4 -4.3 gamma carbonic anhydrase family protein compare
MMP_RS01020 -1.4 -1.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01725 -1.4 -5.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS03305 -1.4 -8.8 winged helix-turn-helix domain-containing protein compare
MMP_RS06230 -1.3 -4.6 helix-turn-helix domain-containing protein compare
MMP_RS04780 -1.3 -4.6 ribonuclease P compare
MMP_RS02240 -1.3 -6.0 methanogenesis marker 7 protein compare
MMP_RS07600 -1.3 -3.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02340 -1.3 -2.1 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01800 -1.3 -4.9 TIGR00303 family protein compare
MMP_RS07605 -1.3 -4.9 diadenylate cyclase compare
MMP_RS07630 -1.3 -1.6 ATP-binding cassette domain-containing protein compare
MMP_RS04870 -1.3 -4.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS05430 -1.3 -5.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS02875 -1.3 -7.0 chorismate pyruvate-lyase family protein compare
MMP_RS07955 -1.3 -5.3 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS07350 -1.3 -2.7 preprotein translocase subunit Sec61beta compare
MMP_RS07575 -1.3 -4.0 RNA ligase partner protein compare
MMP_RS08210 -1.3 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS05250 -1.3 -3.0 NFYB/HAP3 family transcription factor subunit compare
MMP_RS03960 -1.2 -1.8 hypothetical protein compare
MMP_RS06020 -1.2 -4.8 archaeoflavoprotein AfpA compare
MMP_RS07380 -1.2 -3.2 transcription elongation factor Spt5 compare
MMP_RS05815 -1.2 -4.3 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08435 -1.2 -2.7 Era-like GTP-binding protein compare
MMP_RS07005 -1.2 -1.1 4Fe-4S binding protein compare
MMP_RS06175 -1.2 -6.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS07525 -1.2 -7.3 4Fe-4S binding protein compare
MMP_RS00110 -1.1 -4.6 hypothetical protein compare
MMP_RS06865 -1.1 -1.9 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS08165 -1.1 -1.7 phosphoglycerate dehydrogenase compare
MMP_RS06895 -1.1 -1.8 selenocysteine-specific translation elongation factor compare
MMP_RS01325 -1.1 -2.2 dihydroneopterin aldolase family protein compare
MMP_RS08645 -1.1 -5.0 UPF0179 family protein compare
MMP_RS03555 -1.1 -6.1 transcriptional regulator compare
MMP_RS00695 -1.1 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS04890 -1.1 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00290 -1.1 -6.6 hypothetical protein compare
MMP_RS02885 -1.0 -8.4 molybdopterin biosynthesis protein compare
MMP_RS03095 -1.0 -6.5 diphthine synthase compare
MMP_RS03580 -1.0 -3.7 signal recognition particle-docking protein FtsY compare
MMP_RS00900 -1.0 -3.3 50S ribosomal protein L39e compare
MMP_RS04955 -1.0 -4.8 DNA topoisomerase I compare
MMP_RS00810 -1.0 -5.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS04790 -1.0 -7.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01265 -1.0 -1.8 hypothetical protein compare
MMP_RS03250 -1.0 -3.9 MJ1244 family protein compare
MMP_RS02170 -1.0 -3.6 CBS domain-containing protein compare
MMP_RS03155 -0.9 -6.5 precorrin-6A reductase compare
MMP_RS03445 -0.9 -1.5 methanogenesis marker 17 protein compare
MMP_RS05850 -0.9 -4.5 Ldh family oxidoreductase compare
MMP_RS08915 -0.9 -2.3 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS02165 -0.9 -5.4 tRNA-dihydrouridine synthase compare
MMP_RS07200 -0.9 -4.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02110 -0.9 -1.9 hypothetical protein compare
MMP_RS02900 -0.9 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04875 -0.9 -5.9 energy-converting hydrogenase B subunit P compare
MMP_RS04090 -0.9 -2.8 hypothetical protein compare
MMP_RS00515 -0.9 -1.4 DUF655 domain-containing protein compare
MMP_RS07750 -0.9 -4.2 DUF357 domain-containing protein compare
MMP_RS04500 -0.9 -7.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS07710 -0.9 -5.7 cell division protein FtsZ compare
MMP_RS07425 -0.9 -4.0 GTP-binding protein compare
MMP_RS01720 -0.9 -0.8 replication factor C large subunit compare
MMP_RS00720 -0.9 -5.7 metal-dependent hydrolase compare
MMP_RS07720 -0.9 -6.7 4Fe-4S binding protein compare
MMP_RS01795 -0.8 -2.1 methanogenesis marker 6 protein compare
MMP_RS08335 -0.8 -3.8 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS07365 -0.8 -6.7 2-phosphoglycerate kinase compare
MMP_RS08105 -0.8 -5.3 6-carboxyhexanoate--CoA ligase compare
MMP_RS09055 -0.8 -1.3 CAP domain-containing protein compare
MMP_RS08445 -0.8 -3.6 DUF2099 family protein compare
MMP_RS06130 -0.8 -3.2 peptidylprolyl isomerase compare
MMP_RS00985 -0.8 -3.8 CDC48 family AAA ATPase compare
MMP_RS01380 -0.8 -3.0 PHP domain-containing protein compare
MMP_RS05765 -0.8 -5.0 M42 family metallopeptidase compare
MMP_RS07390 -0.8 -2.5 cell division protein FtsZ compare
MMP_RS02245 -0.8 -2.6 hypothetical protein compare
MMP_RS01475 -0.8 -5.0 phosphosulfolactate synthase compare
MMP_RS07090 -0.8 -5.8 tRNA (adenine-N1)-methyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms