Experiment set3IT019 for Caulobacter crescentus NA1000

Compare to:

PYE with copper (II) chloride dihydrate 0.25 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01525 +5.8 18.8 flagellar biosynthesis repressor flbT compare
CCNA_01060 +5.8 23.1 type I protein secretion ATP-binding protein RsaD compare
CCNA_01061 +5.6 14.8 type I secretion adaptor protein RsaE compare
CCNA_01059 +5.1 22.0 S-layer protein rsaA compare
CCNA_03808 +5.1 27.6 organic solvent resistance transport system Ttg2C protein compare
CCNA_00684 +5.0 12.0 anti-sigma factor, ChrR-family compare
CCNA_01979 +4.9 21.3 LexA repressor compare
CCNA_03807 +4.8 20.8 organic solvent resistance transport system Ttg2D protein compare
CCNA_03806 +4.7 27.9 outer membrane lipoprotein compare
CCNA_00043 +4.7 18.3 N utilization substance protein A NusA compare
CCNA_03810 +4.6 29.5 organic solvent resistance transport system ATP-binding protein compare
CCNA_03809 +4.6 19.2 organic solvent resistance transport system permease compare
CCNA_01817 +4.4 25.2 nitrogen assimilation regulatory protein ntrX compare
CCNA_00939 +4.2 12.7 MarR-family transcriptional regulator compare
CCNA_01445 +4.1 15.4 hypothetical protein compare
CCNA_02387 +4.0 33.5 glutathione reductase compare
CCNA_01181 +3.7 16.3 hypothetical protein compare
CCNA_01420 +3.6 15.7 NrdR family transcriptional regulator compare
CCNA_00162 +3.5 13.8 hypothetical protein compare
CCNA_03401 +3.4 7.9 conserved hypothetical cytosolic protein compare
CCNA_01712 +3.4 28.5 CopY/TcrY family transcriptional repressor compare
CCNA_02646 +3.4 5.5 cell division protein MraZ compare
CCNA_00059 +3.3 10.3 oxygen-insensitive NADH nitroreductase compare
CCNA_02910 +3.3 25.2 TonB-dependent receptor compare
CCNA_00296 +3.3 21.9 phosphate regulon response regulator PhoB compare
CCNA_02042 +3.3 20.1 trigger factor chaperone compare
CCNA_02575 +3.2 6.6 hypothetical protein compare
CCNA_02103 +3.2 13.0 hypothetical protein compare
CCNA_01526 +3.2 12.2 flagellar biosynthesis regulatory protein flaF compare
CCNA_03043 +3.2 9.5 type IV pilin protein pilA compare
CCNA_00527 +3.1 15.5 hypothetical protein compare
CCNA_00872 +3.1 12.5 glutaredoxin compare
CCNA_03287 +3.1 11.9 PadR-family transcriptional regulator compare
CCNA_02063 +3.0 12.9 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_01780 +3.0 17.1 exopolyphosphatase compare
CCNA_02957 +3.0 9.1 ArsR-family transcriptional regulator compare
CCNA_02000 +3.0 7.1 SSU ribosomal protein S2P compare
CCNA_02980 +3.0 19.6 tryptophan 2,3-dioxygenase compare
CCNA_R0037 +3.0 13.7 tRNA-Glu compare
CCNA_02644 +3.0 10.1 cell division protein FtsL compare
CCNA_00999 +2.9 11.2 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_01790 +2.9 11.4 protein translocase subunit secG compare
CCNA_01433 +2.9 7.7 integration host factor alpha-subunit compare
CCNA_00011 +2.9 5.4 chaperone protein DnaJ compare
CCNA_00161 +2.8 15.2 hypothetical protein compare
CCNA_03271 +2.8 18.9 methionine gamma-lyase compare
CCNA_01751 +2.8 8.8 aminodeoxychorismate lyase compare
CCNA_00422 +2.8 14.6 SDR pteridine reductase compare
CCNA_03012 +2.8 13.9 peroxiredoxin compare
CCNA_03064 +2.8 16.4 PadR-family transcriptional regulator compare
CCNA_02127 +2.8 19.2 oxacillin resistance-associated protein fmtC compare
CCNA_00518 +2.8 14.9 LSU ribosomal protein L25P compare
CCNA_03129 +2.7 16.1 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03108 +2.7 19.9 TonB-dependent outer membrane receptor compare
CCNA_03252 +2.7 18.7 CopY/TcrY-family transcriptional regulator compare
CCNA_00699 +2.7 15.0 LSU ribosomal protein L28P compare
CCNA_02339 +2.7 14.8 methyltransferase compare
CCNA_01840 +2.7 17.9 MerR-family transcriptional regulator compare
CCNA_02567 +2.7 16.4 sensory transduction histidine kinase pleC compare
CCNA_00521 +2.6 6.1 antitoxin protein compare
CCNA_01931 +2.6 15.4 TetR-family transcriptional regulator compare
CCNA_01801 +2.6 10.5 hypothetical protein compare
CCNA_02037 +2.6 15.1 ATP-dependent endopeptidase Lon compare
CCNA_03989 +2.6 19.8 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02243 +2.6 17.3 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_00044 +2.5 8.6 ribosome maturation protein RimP compare
CCNA_01242 +2.5 17.5 amino acid permease compare
CCNA_03325 +2.5 9.3 hypothetical protein compare
CCNA_03062 +2.5 12.6 cell wall hydrolase family protein compare
CCNA_00954 +2.5 15.9 AAA-family response regulator flbD compare
CCNA_01094 +2.5 5.7 hypothetical protein compare
CCNA_03289 +2.5 18.2 HicB-family RNA-binding protein compare
CCNA_01814 +2.5 18.1 nitrogen regulation protein ntrB compare
CCNA_01521 +2.5 13.5 hypothetical protein compare
CCNA_00032 +2.4 8.6 antitoxin protein VapB compare
CCNA_02075 +2.4 2.6 peptidoglycan binding endopeptidase DipM compare
CCNA_01393 +2.4 15.3 soluble lytic murein transglycosylase compare
CCNA_01913 +2.4 13.7 MarR-family transcriptional regulator compare
CCNA_01573 +2.4 11.6 ArsR-family transcriptional regulator compare
CCNA_00781 +2.4 15.9 two-component receiver protein CpdR compare
CCNA_03740 +2.4 11.6 cysteine synthase compare
CCNA_00210 +2.4 18.2 TonB-dependent receptor compare
CCNA_00950 +2.4 17.2 flagellar M-ring protein FliF compare
CCNA_03805 +2.4 11.4 PadR-family transcriptional regulator compare
CCNA_03479 +2.3 13.9 MarR-family transcriptional regulator compare
CCNA_03215 +2.3 13.7 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_02617 +2.3 17.6 histidinol-phosphate aminotransferase compare
CCNA_01414 +2.3 13.0 3-hydroxyisobutyryl-CoA hydrolase compare
CCNA_03123 +2.3 14.1 ArsR-family transcriptional regulator compare
CCNA_03136 +2.3 9.3 flagellar export protein FliJ compare
CCNA_03689 +2.3 15.6 alanine dehydrogenase compare
CCNA_03961 +2.3 7.7 hypothetical protein compare
CCNA_01008 +2.3 16.2 urocanate hydratase compare
CCNA_00947 +2.3 15.7 flagellar hook protein FlgE compare
CCNA_03832 +2.2 9.6 TetR-family transcriptional regulator compare
CCNA_01014 +2.2 8.5 cysteinyl-tRNA(Pro) deacylase compare
CCNA_01815 +2.2 16.9 nitrogen assimilation regulatory protein NtrC compare
CCNA_03614 +2.2 8.8 hypothetical protein compare
CCNA_02576 +2.2 15.3 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_03951 +2.2 11.6 hypothetical protein compare
CCNA_01011 +2.2 10.5 imidazolonepropionase compare
CCNA_01918 +2.2 11.6 cyclic di-GMP effector protein PopA compare
CCNA_00215 +2.2 10.6 SapC surface layer protein compare
CCNA_03205 +2.2 14.9 M28-family zinc peptidase compare
CCNA_00447 +2.2 10.3 chemotaxis protein cheD compare
CCNA_02225 +2.2 12.8 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01361 +2.2 5.5 PepSY superfamily protein compare
CCNA_02616 +2.1 14.0 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02324 +2.1 11.3 heat shock protein 33 hsp33 compare
CCNA_01655 +2.1 11.9 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01220 +2.1 8.0 7-keto-8-aminopelargonate synthetase compare
CCNA_00945 +2.1 10.6 chemotaxis protein MotD compare
CCNA_00031 +2.1 10.1 toxin protein VapC compare
CCNA_02718 +2.1 11.9 taurine transport system permease protein tauC compare
CCNA_00803 +2.1 8.3 chemotaxis protein cheW compare
CCNA_00952 +2.1 10.6 flagellar assembly protein FlbE/FliH compare
CCNA_01684 +2.1 11.3 phenylalanine-4-hydroxylase compare
CCNA_03861 +2.1 8.2 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_03635 +2.1 3.3 hypothetical protein compare
CCNA_01006 +2.1 7.2 flagellar hook-basal body complex protein FliE compare
CCNA_00163 +2.1 12.7 exopolysaccharide transport family protein compare
CCNA_03938 +2.1 7.7 hypothetical protein compare
CCNA_00322 +2.0 14.4 hypothetical protein compare
CCNA_01186 +2.0 8.8 hypothetical protein compare
CCNA_00998 +2.0 9.7 ROS/MUCR transcriptional regulator compare
CCNA_03089 +2.0 11.5 hypothetical protein compare
CCNA_00245 +2.0 9.2 pterin-4-alpha-carbinolamine dehydratase compare
CCNA_00153 +2.0 8.9 adenine nucleotide exchange factor GrpE compare
CCNA_03612 +2.0 8.9 HTH XRE-family transcriptional regulator compare
CCNA_01528 +2.0 10.4 flagellin fljK compare
CCNA_02073 +2.0 7.0 cupin domain transcriptional regulator compare
CCNA_03762 +2.0 8.4 acetolactate synthase-related protein compare
CCNA_00756 +2.0 3.5 hypothetical protein compare
CCNA_03420 +2.0 9.9 hypothetical protein compare
CCNA_01553 +2.0 11.1 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_00368 +2.0 11.3 phosphonates transport system permease protein phnE compare
CCNA_01681 +2.0 6.6 RimI-like acetyltransferase compare
CCNA_02448 +2.0 9.4 hypothetical protein compare
CCNA_01742 +2.0 8.6 hypothetical protein compare
CCNA_00675 +2.0 7.9 VapC-like PIN domain ribonuclease compare
CCNA_01968 +2.0 4.8 pentapeptide repeats containing protein compare
CCNA_00951 +2.0 11.4 flagellar motor switch protein FliG compare
CCNA_01580 +1.9 6.5 M15 superfamily membrane peptidase compare
CCNA_00944 +1.9 10.5 flagellar hook length determination protein compare
CCNA_00441 +1.9 10.2 chemotaxis receiver domain protein cheYI compare
CCNA_01851 +1.9 13.1 quinol cytochrome oxidase polypeptide II compare
CCNA_00168 +1.9 14.1 polysaccharide export protein compare
CCNA_00895 +1.9 10.4 hypothetical protein compare
CCNA_01959 +1.9 4.6 3-dehydroquinate dehydratase compare
CCNA_01804 +1.9 11.4 glutathione peroxidase compare
CCNA_02004 +1.9 3.9 SOS-induced inhibitor of cell division SidA compare
CCNA_02732 +1.9 3.4 hypothetical protein compare
CCNA_00834 +1.9 8.7 flagellin FljM compare
CCNA_02843 +1.9 4.5 toxin protein parE-3 compare
CCNA_02737 +1.9 3.1 queuosine biosynthesis protein QueF compare
CCNA_01533 +1.9 6.6 hypothetical protein compare
CCNA_02199 +1.9 13.2 methyltransferase compare
CCNA_01002 +1.9 8.8 flagellar biosyntheis protein FliP compare
CCNA_02717 +1.9 10.7 maltose/maltodextrin transport ATP-binding protein malK compare
CCNA_03519 +1.9 4.7 PadR-family transcriptional regulator compare
CCNA_02295 +1.9 3.4 hypothetical protein compare
CCNA_03260 +1.9 10.3 queuosine biosynthesis protein QueD compare
CCNA_00953 +1.9 7.0 flagellar motor switch protein FliN compare
CCNA_03464 +1.9 9.3 glycine cleavage system H protein compare
CCNA_03949 +1.9 8.5 hypothetical protein compare
CCNA_R0075 +1.9 2.6 tRNA-Met compare
CCNA_00400 +1.9 8.2 MarR/EmrR-family transcriptional regulator compare
CCNA_00517 +1.8 2.7 peptidyl-tRNA hydrolase compare
CCNA_01608 +1.8 8.1 TetR-family transcriptional regulator compare
CCNA_01690 +1.8 6.3 MAPEG family membrane protein compare
CCNA_01680 +1.8 9.2 succinylarginine dihydrolase compare
CCNA_03206 +1.8 11.1 L-serine dehydratase compare
CCNA_03323 +1.8 12.2 phosphoserine aminotransferase compare
CCNA_01593 +1.8 10.6 Xaa-pro aminopeptidase compare
CCNA_02805 +1.8 7.7 hypothetical protein compare
CCNA_00079 +1.8 7.1 MerR-family transcriptional regulator compare
CCNA_03964 +1.8 2.8 hypothetical protein compare
CCNA_03518 +1.8 11.9 cytochrome c oxidase polypeptide II coxB compare
CCNA_01619 +1.8 10.7 NYN domain protein compare
CCNA_02716 +1.8 9.3 ABC transporter substrate-binding protein compare
CCNA_01813 +1.8 9.0 tRNA-dihydrouridine synthase compare
CCNA_01802 +1.8 4.1 hypothetical protein compare
CCNA_01926 +1.8 7.9 GGDEF diguanylate cyclase DgcB compare
CCNA_00352 +1.8 9.6 integral membrane protein compare
CCNA_02395 +1.8 6.3 hypothetical protein compare
CCNA_02760 +1.8 4.6 hypothetical protein compare
CCNA_02067 +1.8 10.0 conserved membrane spanning protein compare
CCNA_01541 +1.8 11.5 LysR-family transcriptional regulator compare
CCNA_03893 +1.8 4.4 hypothetical protein compare
CCNA_01678 +1.8 9.3 arginine N-succinyltransferase, beta chain compare
CCNA_00726 +1.8 13.0 acyl-CoA dehydrogenase compare
CCNA_02125 +1.7 13.2 polar development protein podJ compare
CCNA_03688 +1.7 9.7 AsnC-family transcriptional regulator compare
CCNA_03940 +1.7 2.5 hypothetical protein compare
CCNA_01235 +1.7 8.9 AcrR-family transcriptional regulator compare
CCNA_03622 +1.7 9.7 beta-lactamase repressor compare
CCNA_02021 +1.7 4.0 hypothetical protein compare
CCNA_01505 +1.7 4.2 hypothetical protein compare
CCNA_03214 +1.7 9.0 hypothetical protein compare
CCNA_02077 +1.7 3.0 5'(3')-nucleotidase/polyphosphatase SurE compare


Specific Phenotypes

For 12 genes in this experiment

For stress copper (II) chloride dihydrate in Caulobacter crescentus NA1000

For stress copper (II) chloride dihydrate across organisms