Experiment set3IT019 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 1; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -6.3 -8.6 NUDIX domain-containing protein compare
ABZR87_RS08630 -5.5 -6.5 dihydroorotase compare
ABZR87_RS01225 -5.4 -3.7 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS02145 -5.2 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS05100 -4.6 -5.5 RNA polymerase-binding protein DksA compare
ABZR87_RS14965 -4.5 -3.1 DUF3619 family protein compare
ABZR87_RS02590 -4.2 -9.8 3-dehydroquinate synthase compare
ABZR87_RS08795 -4.2 -2.9 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS08695 -4.1 -15.5 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS14115 -4.0 -3.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS00435 -4.0 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS01255 -4.0 -12.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS02640 -4.0 -15.1 diaminopimelate decarboxylase compare
ABZR87_RS13705 -3.9 -2.7 integration host factor subunit alpha compare
ABZR87_RS11790 -3.8 -2.6 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS10170 -3.7 -5.7 RseA family anti-sigma factor compare
ABZR87_RS09515 -3.7 -2.5 cysteine synthase CysM compare
ABZR87_RS14540 -3.6 -6.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS13790 -3.6 -9.9 chorismate synthase compare
ABZR87_RS16170 -3.6 -2.5 argininosuccinate lyase compare
ABZR87_RS05305 -3.5 -12.8 TetR family transcriptional regulator compare
ABZR87_RS09895 -3.5 -2.4 DUF1841 family protein compare
ABZR87_RS07050 -3.5 -2.4 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS22920 -3.5 -6.4 phosphogluconate dehydratase compare
ABZR87_RS09465 -3.5 -7.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS06400 -3.4 -7.3 response regulator transcription factor compare
ABZR87_RS08990 -3.4 -7.2 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS14490 -3.4 -9.9 tryptophan synthase subunit alpha compare
ABZR87_RS11170 -3.3 -1.4 FixH family protein compare
ABZR87_RS13475 -3.2 -7.6 PAS domain S-box protein compare
ABZR87_RS12785 -3.2 -4.3 endopeptidase La compare
ABZR87_RS02440 -3.1 -8.7 twin-arginine translocase subunit TatC compare
ABZR87_RS02555 -3.0 -5.7 ABC transporter ATP-binding protein compare
ABZR87_RS04975 -2.9 -3.5 peptide deformylase compare
ABZR87_RS14500 -2.9 -12.1 tryptophan synthase subunit beta compare
ABZR87_RS04865 -2.9 -4.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02445 -2.9 -4.4 Sec-independent protein translocase protein TatB compare
ABZR87_RS08985 -2.9 -12.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS07035 -2.9 -7.1 RNase adapter RapZ compare
ABZR87_RS02385 -2.8 -5.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS02075 -2.8 -3.0 23S ribosomal RNA compare
ABZR87_RS07510 -2.7 -4.2 LysR family transcriptional regulator compare
ABZR87_RS08970 -2.7 -8.7 protein TolQ compare
ABZR87_RS12790 -2.7 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS10980 -2.7 -1.6 tRNA-Leu compare
ABZR87_RS02550 -2.7 -4.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS07360 -2.6 -10.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS08700 -2.6 -7.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS02325 -2.5 -4.8 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS06705 -2.5 -12.4 glutamate--cysteine ligase compare
ABZR87_RS09935 -2.5 -1.7 amino acid aminotransferase compare
ABZR87_RS02545 -2.4 -6.6 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS05065 -2.4 -3.3 tyrosine recombinase XerC compare
ABZR87_RS03420 -2.4 -1.4 type II secretion system minor pseudopilin GspI compare
ABZR87_RS13290 -2.4 -3.8 3-ketoacyl-ACP reductase compare
ABZR87_RS09615 -2.3 -1.5 50S ribosomal protein L19 compare
ABZR87_RS08625 -2.3 -1.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02535 -2.3 -4.7 phospholipid-binding protein MlaC compare
ABZR87_RS14530 -2.3 -6.6 3-isopropylmalate dehydrogenase compare
ABZR87_RS02595 -2.3 -8.5 shikimate kinase compare
ABZR87_RS04995 -2.3 -2.7 DNA topoisomerase III compare
ABZR87_RS10195 -2.3 -3.1 signal peptidase I compare
ABZR87_RS02570 -2.3 -15.4 glutamate synthase-related protein compare
ABZR87_RS16960 -2.2 -4.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS14375 -2.2 -3.3 fumarate hydratase compare
ABZR87_RS10175 -2.2 -5.2 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS13300 -2.2 -6.5 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07380 -2.2 -12.0 FAD/FMN-binding oxidoreductase compare
ABZR87_RS15715 -2.2 -6.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS12970 -2.2 -2.5 putative holin compare
ABZR87_RS01615 -2.2 -1.1 RNB domain-containing ribonuclease compare
ABZR87_RS21285 -2.2 -2.6 TetR/AcrR family transcriptional regulator compare
ABZR87_RS11125 -2.2 -5.8 cell division protein ZapE compare
ABZR87_RS21950 -2.1 -8.0 hypothetical protein compare
ABZR87_RS13250 -2.1 -2.4 phosphoserine phosphatase SerB compare
ABZR87_RS01645 -2.1 -4.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS00795 -2.1 -3.2 site-specific tyrosine recombinase XerD compare
ABZR87_RS02140 -2.1 -10.8 anthranilate synthase component I compare
ABZR87_RS14535 -2.1 -2.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS01035 -2.1 -4.1 histidine utilization repressor compare
ABZR87_RS04940 -2.0 -7.0 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02160 -2.0 -3.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS07005 -2.0 -2.2 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS01245 -2.0 -2.8 Dps family protein compare
ABZR87_RS08980 -2.0 -2.9 cell envelope integrity protein TolA compare
ABZR87_RS06745 -2.0 -5.3 S41 family peptidase compare
ABZR87_RS02375 -2.0 -8.0 cytochrome c1 compare
ABZR87_RS20555 -2.0 -4.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS12150 -2.0 -3.0 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS11245 -2.0 -3.9 translational GTPase TypA compare
ABZR87_RS08585 -2.0 -2.0 chemotaxis protein CheW compare
ABZR87_RS02155 -2.0 -5.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS02220 -2.0 -8.1 redox-regulated ATPase YchF compare
ABZR87_RS07635 -2.0 -1.4 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS02380 -2.0 -8.2 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS22970 -2.0 -10.5 cystathionine gamma-synthase family protein compare
ABZR87_RS17145 -1.9 -11.4 AMP nucleosidase compare
ABZR87_RS05590 -1.9 -1.3 orotate phosphoribosyltransferase compare
ABZR87_RS02540 -1.9 -5.8 VacJ family lipoprotein compare
ABZR87_RS11330 -1.9 -2.8 transcriptional repressor LexA compare
ABZR87_RS09820 -1.9 -3.4 RidA family protein compare
ABZR87_RS05645 -1.9 -3.6 SDR family oxidoreductase compare
ABZR87_RS10400 -1.9 -1.3 hypothetical protein compare
ABZR87_RS06385 -1.9 -8.8 CHASE3 domain-containing protein compare
ABZR87_RS05200 -1.9 -11.4 homoserine O-acetyltransferase compare
ABZR87_RS09445 -1.9 -8.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS14190 -1.8 -7.2 DUF2589 domain-containing protein compare
ABZR87_RS11940 -1.8 -2.2 SsrA-binding protein SmpB compare
ABZR87_RS12795 -1.8 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS00970 -1.8 -1.2 molecular chaperone DnaJ compare
ABZR87_RS00360 -1.8 -2.0 acyl-CoA desaturase compare
ABZR87_RS02565 -1.8 -4.5 glutamate synthase subunit beta compare
ABZR87_RS11015 -1.8 -4.0 amino-acid N-acetyltransferase compare
ABZR87_RS08640 -1.8 -4.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS07290 -1.7 -2.9 DUF6691 family protein compare
ABZR87_RS14605 -1.7 -8.5 aconitate hydratase AcnA compare
ABZR87_RS11010 -1.7 -2.0 oxidative damage protection protein compare
ABZR87_RS07965 -1.7 -4.5 recombinase RecA compare
ABZR87_RS10785 -1.7 -2.0 exodeoxyribonuclease V subunit beta compare
ABZR87_RS02655 -1.7 -7.9 anti-sigma factor compare
ABZR87_RS11435 -1.7 -2.5 Mth938-like domain-containing protein compare
ABZR87_RS08660 -1.6 -3.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS04125 -1.6 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS14505 -1.6 -2.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS20880 -1.6 -5.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS16185 -1.6 -2.0 dCTP deaminase compare
ABZR87_RS14950 -1.6 -1.5 acetolactate synthase small subunit compare
ABZR87_RS07625 -1.6 -1.9 Holliday junction branch migration protein RuvA compare
ABZR87_RS00835 -1.6 -1.1 argininosuccinate synthase compare
ABZR87_RS21365 -1.6 -1.2 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS01275 -1.6 -4.5 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS04880 -1.6 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS09625 -1.6 -6.9 CobD/CbiB family protein compare
ABZR87_RS06645 -1.6 -1.1 TlpA disulfide reductase family protein compare
ABZR87_RS01110 -1.6 -7.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS06715 -1.6 -4.1 PTS sugar transporter subunit IIA compare
ABZR87_RS07705 -1.6 -2.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS09450 -1.5 -4.2 prephenate dehydratase compare
ABZR87_RS00875 -1.5 -3.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS13415 -1.5 -3.9 IclR family transcriptional regulator compare
ABZR87_RS07470 -1.5 -5.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13285 -1.5 -7.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS10900 -1.5 -2.8 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS05350 -1.5 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS01885 -1.4 -3.0 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS01685 -1.4 -4.4 histone H1-like DNA-binding protein compare
ABZR87_RS07355 -1.4 -3.9 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS21955 -1.4 -4.7 hypothetical protein compare
ABZR87_RS10190 -1.4 -5.0 translation elongation factor 4 compare
ABZR87_RS09000 -1.4 -4.9 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS03430 -1.4 -8.2 type II secretion system minor pseudopilin GspK compare
ABZR87_RS16270 -1.4 -1.5 cold-shock protein compare
ABZR87_RS12965 -1.3 -2.6 tail protein X compare
ABZR87_RS20875 -1.3 -5.3 LysR family transcriptional regulator compare
ABZR87_RS17235 -1.3 -4.3 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS22690 -1.3 -2.1 XRE family transcriptional regulator compare
ABZR87_RS06350 -1.3 -7.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS10085 -1.3 -1.0 Rne/Rng family ribonuclease compare
ABZR87_RS07730 -1.3 -2.2 lysophospholipid acyltransferase family protein compare
ABZR87_RS07055 -1.3 -5.9 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS05205 -1.3 -3.7 methionine biosynthesis protein MetW compare
ABZR87_RS03440 -1.3 -4.9 type II secretion system protein GspM compare
ABZR87_RS06710 -1.3 -8.7 glutathione synthase compare
ABZR87_RS16125 -1.3 -3.7 heme biosynthesis protein HemY compare
ABZR87_RS11370 -1.3 -2.0 DUF47 domain-containing protein compare
ABZR87_RS01565 -1.3 -6.8 NADP-dependent malic enzyme compare
ABZR87_RS03410 -1.3 -5.6 type II secretion system major pseudopilin GspG compare
ABZR87_RS03450 -1.3 -6.9 type II secretion system secretin GspD compare
ABZR87_RS12950 -1.3 -3.6 phage major capsid protein, P2 family compare
ABZR87_RS15705 -1.3 -2.8 UvrD-helicase domain-containing protein compare
ABZR87_RS12960 -1.3 -1.3 head completion/stabilization protein compare
ABZR87_RS03425 -1.2 -5.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS05570 -1.2 -5.2 lysophospholipid acyltransferase family protein compare
ABZR87_RS06315 -1.2 -7.8 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS18165 -1.2 -1.9 hypothetical protein compare
ABZR87_RS11815 -1.2 -4.9 [protein-PII] uridylyltransferase compare
ABZR87_RS00440 -1.2 -6.0 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS15240 -1.2 -1.0 YicC/YloC family endoribonuclease compare
ABZR87_RS06855 -1.2 -2.4 RNA polymerase sigma factor RpoH compare
ABZR87_RS12945 -1.2 -2.2 GPO family capsid scaffolding protein compare
ABZR87_RS22035 -1.2 -3.7 hypothetical protein compare
ABZR87_RS01555 -1.2 -1.0 barstar family protein compare
ABZR87_RS04270 -1.2 -3.4 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS03435 -1.2 -4.2 type II secretion system protein GspL compare
ABZR87_RS12145 -1.2 -2.8 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS19675 -1.2 -1.3 cold-shock protein compare
ABZR87_RS05170 -1.2 -0.8 acetylglutamate kinase compare
ABZR87_RS10650 -1.2 -2.9 DNA-3-methyladenine glycosylase compare
ABZR87_RS02850 -1.2 -2.0 elongation factor Tu compare
ABZR87_RS16660 -1.2 -3.9 helix-turn-helix domain-containing protein compare
ABZR87_RS01980 -1.2 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS17310 -1.2 -4.4 PadR family transcriptional regulator compare
ABZR87_RS02575 -1.1 -5.7 transposase compare
ABZR87_RS01270 -1.1 -4.4 ATP-dependent DNA helicase RecG compare
ABZR87_RS10060 -1.1 -3.7 DNA recombination protein RmuC compare
ABZR87_RS20495 -1.1 -1.5 hypothetical protein compare
ABZR87_RS07620 -1.1 -2.4 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS17980 -1.1 -5.8 CheR family methyltransferase compare
ABZR87_RS12775 -1.1 -3.4 tRNA-Val compare
ABZR87_RS03460 -1.1 -6.7 type II secretion system inner membrane protein GspF compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in soil experiments