Experiment set3IT018 for Pseudomonas fluorescens FW300-N2C3

Compare to:

KB-half, Pseudo11 supernatant, 100 uM FeCl3

200 most important genes:

  gene name fitness t score description  
AO356_03400 -3.6 -5.9 aminotransferase DegT compare
AO356_03405 -3.2 -4.2 serine acetyltransferase compare
AO356_03415 -2.9 -9.2 oxidoreductase compare
AO356_03420 -2.8 -8.4 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_15325 -2.8 -1.8 hypothetical protein compare
AO356_20800 -2.6 -1.3 hypothetical protein compare
AO356_21705 -2.2 -2.6 response regulator compare
AO356_15200 -2.2 -6.7 hypothetical protein compare
AO356_19080 -2.1 -6.9 dehydrogenase compare
AO356_25830 -2.0 -1.2 DNA repair protein compare
AO356_05995 -1.9 -2.2 hypothetical protein compare
AO356_04055 -1.9 -2.1 hypothetical protein compare
AO356_16955 -1.9 -4.6 disulfide bond formation protein B compare
AO356_08870 -1.8 -5.4 polymerase compare
AO356_24955 -1.8 -2.7 D-amino acid oxidase compare
AO356_03360 -1.8 -2.4 hypothetical protein compare
AO356_03375 -1.7 -2.6 ExsB family protein compare
AO356_08875 -1.7 -2.3 toluene tolerance protein compare
AO356_15420 -1.7 -4.6 hypothetical protein compare
AO356_20850 -1.7 -4.0 hypothetical protein compare
AO356_08880 -1.7 -2.9 glycosyl transferase compare
AO356_18000 -1.6 -1.6 FmdB family transcriptional regulator compare
AO356_03350 -1.6 -6.9 glycosyl transferase compare
AO356_15435 -1.6 -2.7 hydrogenase compare
AO356_15275 -1.5 -3.9 ATP-dependent protease compare
AO356_04445 -1.5 -2.3 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO356_14540 -1.5 -3.0 biotin--protein ligase compare
AO356_26350 -1.5 -1.9 acetyl-CoA acetyltransferase compare
AO356_26285 -1.5 -1.4 sugar ABC transporter substrate-binding protein compare
AO356_28440 -1.5 -1.4 galactose 1-dehydrogenase compare
AO356_25110 -1.5 -1.6 protein DnrP compare
AO356_03365 -1.4 -4.0 UDP-N-acetylglucosamine 2-epimerase compare
AO356_03800 -1.4 -0.9 histidine kinase compare
AO356_24215 -1.4 -3.6 chemotaxis protein CheC compare
AO356_27595 -1.4 -2.6 amino acid ABC transporter substrate-binding protein compare
AO356_09350 -1.4 -1.9 hypothetical protein compare
AO356_05655 -1.4 -3.1 hypothetical protein compare
AO356_18805 -1.4 -1.0 magnesium transporter compare
AO356_25720 -1.4 -1.2 polyamine ABC transporter permease compare
AO356_25505 -1.4 -1.6 hypothetical protein compare
AO356_13375 -1.3 -3.2 thiazole synthase compare
AO356_11450 -1.3 -1.4 cytochrome C compare
AO356_22770 -1.3 -2.8 hypothetical protein compare
AO356_18855 -1.3 -1.6 hypothetical protein compare
AO356_13395 -1.3 -1.6 non-canonical purine NTP pyrophosphatase compare
AO356_18775 -1.3 -1.9 aspartate kinase compare
AO356_14135 -1.3 -5.0 biotin synthase compare
AO356_17070 -1.3 -2.0 cytochrome B compare
AO356_08135 -1.3 -1.8 MFS transporter compare
AO356_07055 -1.3 -1.5 phosphocarrier protein HPr compare
AO356_15925 -1.2 -2.8 ribosomal large subunit pseudouridine synthase D compare
AO356_19320 -1.2 -1.9 hypothetical protein compare
AO356_03595 -1.2 -1.6 carbon storage regulator compare
AO356_28680 -1.2 -1.9 short-chain dehydrogenase compare
AO356_01750 -1.2 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO356_00440 -1.2 -2.5 peptidylprolyl isomerase compare
AO356_00560 -1.2 -1.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_17765 -1.2 -1.6 antibiotic biosynthesis monooxygenase compare
AO356_02590 -1.2 -1.8 hypothetical protein compare
AO356_17575 -1.1 -1.4 hypothetical protein compare
AO356_01720 -1.1 -3.5 hypothetical protein compare
AO356_25090 -1.1 -1.4 hypothetical protein compare
AO356_22665 -1.1 -1.9 chemotaxis protein compare
AO356_17890 -1.1 -1.4 H-NS histone compare
AO356_09145 -1.1 -2.4 acyl carrier protein compare
AO356_15265 -1.1 -3.3 murein hydrolase transporter LrgA compare
AO356_17075 -1.1 -2.2 cytochrome C compare
AO356_25150 -1.1 -1.4 molybdenum cofactor biosynthesis protein B compare
AO356_03355 -1.1 -3.1 hypothetical protein compare
AO356_08890 -1.1 -3.7 glycosyltransferase compare
AO356_06575 -1.1 -1.7 outer membrane protein assembly factor BamB compare
AO356_03345 -1.1 -6.3 hypothetical protein compare
AO356_11205 -1.1 -3.6 copper-binding protein compare
AO356_18300 -1.1 -3.1 (2Fe-2S)-binding protein compare
AO356_02445 -1.1 -1.4 prevent-host-death protein compare
AO356_27790 -1.0 -1.8 N-acetylglucosamine-6-sulfatase compare
AO356_16725 -1.0 -1.9 HopJ type III effector protein compare
AO356_12745 -1.0 -2.3 iron donor protein CyaY compare
AO356_03215 -1.0 -4.7 hypothetical protein compare
AO356_09765 -1.0 -1.3 sulfurtransferase compare
AO356_09140 -1.0 -4.1 acyltransferase compare
AO356_25485 -1.0 -2.0 aldehyde dehydrogenase compare
AO356_13565 -1.0 -2.6 16S rRNA methyltransferase compare
AO356_09460 -1.0 -2.2 ATP-dependent protease ATP-binding subunit HslU compare
AO356_09170 -1.0 -1.5 glycosyl transferase compare
AO356_05755 -1.0 -1.2 ArsR family transcriptional regulator compare
AO356_09290 -1.0 -2.6 LysR family transcriptional regulator compare
AO356_15500 -1.0 -3.6 hypothetical protein compare
AO356_22775 -1.0 -2.2 hypothetical protein compare
AO356_13860 -1.0 -3.5 AraC family transcriptional regulator compare
AO356_13065 -1.0 -2.8 hypothetical protein compare
AO356_16485 -0.9 -3.3 hypothetical protein compare
AO356_11055 -0.9 -1.7 long-chain acyl-CoA thioester hydrolase compare
AO356_21160 -0.9 -1.8 RND transporter compare
AO356_23500 -0.9 -3.7 TetR family transcriptional regulator compare
AO356_26270 -0.9 -1.2 histidine kinase compare
AO356_27995 -0.9 -1.3 thioredoxin reductase compare
AO356_20100 -0.9 -2.7 (2Fe-2S)-binding protein compare
AO356_18435 -0.9 -1.8 hypothetical protein compare
AO356_09775 -0.9 -4.2 peptidase M23 compare
AO356_25390 -0.9 -1.3 enamine deaminase RidA compare
AO356_09330 -0.9 -2.1 type II secretion system protein GspG compare
AO356_01270 -0.9 -3.4 (Fe-S)-binding protein compare
AO356_13345 -0.9 -1.7 cell division ATP-binding protein FtsE compare
AO356_02460 -0.9 -0.9 hypothetical protein compare
AO356_18890 -0.9 -1.5 flagellar biosynthesis protein FlgN compare
AO356_29125 -0.9 -1.3 vanillate monooxygenase compare
AO356_18330 -0.9 -3.5 hypothetical protein compare
AO356_27640 -0.9 -2.1 chemotaxis protein CheB compare
AO356_07385 -0.9 -0.7 tRNA-Thr compare
AO356_18850 -0.9 -2.6 hypothetical protein compare
AO356_10755 -0.9 -0.9 hypothetical protein compare
AO356_02205 -0.9 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_24450 -0.9 -1.5 microcin ABC transporter ATP-binding protein compare
AO356_08385 -0.9 -1.1 urease subunit beta compare
AO356_05970 -0.9 -1.9 ribonuclease HII compare
AO356_01095 -0.9 -1.0 glycolate oxidase compare
AO356_13505 -0.9 -0.9 chemotaxis protein compare
AO356_08160 -0.9 -1.8 translation initiation factor Sui1 compare
AO356_20920 -0.9 -2.4 peptidase compare
AO356_02325 -0.9 -1.0 3-ketoacyl-CoA thiolase compare
AO356_24725 -0.9 -1.0 alkylhydroperoxidase compare
AO356_14105 -0.9 -0.6 glycine cleavage system protein R compare
AO356_06995 -0.9 -3.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_29285 -0.9 -2.3 LysR family transcriptional regulator compare
AO356_21125 -0.9 -1.3 cyclic peptide transporter compare
AO356_26245 -0.9 -1.0 energy transducer TonB compare
AO356_22675 -0.9 -0.5 sulfate transporter compare
AO356_13965 -0.8 -1.6 hypothetical protein compare
AO356_12460 -0.8 -2.5 hypothetical protein compare
AO356_13195 -0.8 -3.9 thiol-disulfide isomerase compare
AO356_16810 -0.8 -2.9 hypothetical protein compare
AO356_24150 -0.8 -2.8 hypothetical protein compare
AO356_21405 -0.8 -1.4 3-isopropylmalate dehydratase compare
AO356_26110 -0.8 -1.3 sarcosine oxidase subunit alpha compare
AO356_03225 -0.8 -2.8 esterase compare
AO356_17590 -0.8 -2.5 hypothetical protein compare
AO356_03730 -0.8 -4.2 flagellar biosynthesis sigma factor compare
AO356_13525 -0.8 -1.7 biotin-independent malonate decarboxylase subunit beta compare
AO356_14150 -0.8 -3.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_13880 -0.8 -1.9 DNA-binding protein compare
AO356_26275 -0.8 -2.0 cag pathogenicity island protein Cag5 compare
AO356_09230 -0.8 -2.6 excinuclease compare
AO356_25865 -0.8 -0.8 peroxidase compare
AO356_15235 -0.8 -2.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO356_25980 -0.8 -1.7 autotransporter subunit beta compare
AO356_22870 -0.8 -1.4 glycerate kinase compare
AO356_05565 -0.8 -2.2 hypothetical protein compare
AO356_28420 -0.8 -2.1 hypothetical protein compare
AO356_19765 -0.8 -2.4 helicase compare
AO356_23475 -0.8 -1.9 polyketide synthase compare
AO356_21080 -0.8 -1.4 sugar dehydrogenase compare
AO356_02125 -0.8 -1.9 hypothetical protein compare
AO356_12895 -0.8 -6.4 polyphosphate kinase compare
AO356_08400 -0.8 -1.4 chaperone modulatory protein CbpM compare
AO356_27965 -0.8 -0.7 benzaldehyde dehydrogenase compare
AO356_00935 -0.8 -1.8 hypothetical protein compare
AO356_20775 -0.8 -1.6 short-chain dehydrogenase compare
AO356_24865 -0.8 -1.5 Valyl-tRNA synthetase compare
AO356_26235 -0.8 -1.3 protein TolQ compare
AO356_25840 -0.8 -1.2 peptidylprolyl isomerase compare
AO356_22970 -0.8 -2.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
AO356_28000 -0.8 -1.0 Rrf2 family transcriptional regulator compare
AO356_24580 -0.8 -1.6 GntR family transcriptional regulator compare
AO356_04085 -0.8 -2.0 hypothetical protein compare
AO356_18155 -0.8 -0.8 cold-shock protein compare
AO356_17825 -0.8 -1.8 enoyl-CoA hydratase compare
AO356_27600 -0.8 -1.5 RND transporter MFP subunit compare
AO356_28400 -0.8 -1.3 dimethyl sulfone monooxygenase SfnG compare
AO356_26850 -0.8 -1.9 3-oxoacyl-ACP synthase compare
AO356_03280 -0.8 -2.8 metal-chelation protein CHAD compare
AO356_05895 -0.8 -2.1 protein-L-isoaspartate O-methyltransferase compare
AO356_27360 -0.8 -1.4 nitrile hydratase subunit alpha compare
AO356_01015 -0.8 -1.1 peptidylprolyl isomerase compare
AO356_06440 -0.8 -2.1 hypothetical protein compare
AO356_18845 -0.8 -1.8 hypothetical protein compare
AO356_18340 -0.8 -2.1 leucyl-tRNA synthetase compare
AO356_30125 -0.8 -1.8 xylose isomerase compare
AO356_22280 -0.8 -2.1 gluconolactonase compare
AO356_16340 -0.7 -2.1 hypothetical protein compare
AO356_09210 -0.7 -1.4 3-oxoacyl-ACP synthase compare
AO356_26370 -0.7 -2.1 crotonase compare
AO356_17845 -0.7 -3.0 hypothetical protein compare
AO356_27180 -0.7 -2.4 hypothetical protein compare
AO356_26820 -0.7 -0.9 hypothetical protein compare
AO356_15405 -0.7 -2.4 ATP-binding protein compare
AO356_12375 -0.7 -4.1 histidine kinase compare
AO356_12300 -0.7 -1.4 type VI secretion protein compare
AO356_15495 -0.7 -3.3 endonuclease compare
AO356_29755 -0.7 -1.4 hypothetical protein compare
AO356_28700 -0.7 -1.5 hypothetical protein compare
AO356_24940 -0.7 -1.4 AraC family transcriptional regulator compare
AO356_26160 -0.7 -2.4 MFS transporter compare
AO356_12730 -0.7 -1.4 hypothetical protein compare
AO356_23520 -0.7 -1.6 fructoselysine kinase compare
AO356_10085 -0.7 -3.1 haloacid dehalogenase compare
AO356_25395 -0.7 -1.0 fimbrial assembly protein FimA compare
AO356_00875 -0.7 -2.2 MerR family transcriptional regulator compare
AO356_28585 -0.7 -2.0 ABC transporter compare
AO356_10010 -0.7 -2.3 GCN5 family acetyltransferase compare


Specific Phenotypes

For 3 genes in this experiment