Experiment set3IT018 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Rifampicin 0.004 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_289 -4.2 -18.4 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_1441 -4.1 -13.9 Putative esterase, FIGfam005057 compare
Pf1N1B4_291 -3.9 -6.3 Major outer membrane lipoprotein I compare
Pf1N1B4_2885 -3.9 -6.4 Paraquat-inducible protein A compare
Pf1N1B4_2695 -3.5 -2.4 Rare lipoprotein A precursor compare
Pf1N1B4_769 -3.5 -6.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2106 -3.4 -4.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1307 -3.4 -2.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3091 -3.3 -4.9 Membrane-associated zinc metalloprotease compare
Pf1N1B4_2609 -3.1 -14.0 Catalase (EC 1.11.1.6) compare
Pf1N1B4_1468 -3.1 -12.8 InaA protein compare
Pf1N1B4_2856 -3.1 -4.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2886 -3.1 -14.1 Paraquat-inducible protein B compare
Pf1N1B4_1469 -3.0 -16.2 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_4957 -3.0 -2.4 Transcriptional regulator, TetR family compare
Pf1N1B4_3785 -2.8 -2.7 FOG: Ankyrin repeat compare
Pf1N1B4_3833 -2.8 -10.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1403 -2.7 -8.1 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2917 -2.7 -9.9 FIG140336: TPR domain protein compare
Pf1N1B4_3147 -2.7 -8.9 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf1N1B4_2884 -2.6 -6.6 Paraquat-inducible protein A compare
Pf1N1B4_1462 -2.6 -14.3 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3830 -2.5 -3.8 CrfX protein compare
Pf1N1B4_3445 -2.5 -4.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_1544 -2.5 -9.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1619 -2.5 -11.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2874 -2.5 -2.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_4132 -2.4 -2.7 Mobile element protein compare
Pf1N1B4_3362 -2.4 -4.9 Multidrug resistance protein B compare
Pf1N1B4_58 -2.4 -7.9 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1472 -2.3 -1.8 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_240 -2.3 -3.0 Transcriptional regulators compare
Pf1N1B4_3166 -2.2 -10.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_290 -2.2 -17.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4839 -2.2 -2.0 lipoprotein compare
Pf1N1B4_3668 -2.2 -8.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_4636 -2.2 -3.1 TPR domain protein in aerotolerance operon compare
Pf1N1B4_5383 -2.2 -7.0 hypothetical protein compare
Pf1N1B4_2621 -2.2 -2.2 PspA/IM30 family protein compare
Pf1N1B4_389 -2.1 -6.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_350 -2.1 -6.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_718 -2.1 -7.5 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_2026 -2.1 -4.3 Transcriptional regulator compare
Pf1N1B4_1614 -2.1 -3.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_3093 -2.1 -1.3 Outer membrane protein H precursor compare
Pf1N1B4_3816 -2.0 -7.0 FIG139976: hypothetical protein compare
Pf1N1B4_2169 -2.0 -3.5 FIG00953808: hypothetical protein compare
Pf1N1B4_388 -2.0 -5.7 OmpA family protein compare
Pf1N1B4_1906 -2.0 -4.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4024 -2.0 -3.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1641 -2.0 -9.2 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_2209 -1.9 -7.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2105 -1.9 -2.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3667 -1.9 -6.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_1889 -1.9 -12.0 Fused spore maturation proteins A and B compare
Pf1N1B4_4640 -1.9 -5.4 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_578 -1.8 -3.1 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3591 -1.8 -6.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_3468 -1.8 -2.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1679 -1.8 -2.0 Membrane-fusion protein compare
Pf1N1B4_2322 -1.8 -2.1 FIG015547: peptidase, M16 family compare
Pf1N1B4_501 -1.8 -2.2 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_763 -1.8 -4.7 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_2114 -1.8 -6.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_304 -1.8 -2.1 Deoxyribonuclease TatD compare
Pf1N1B4_292 -1.8 -15.0 ErfK/YbiS/YcfS/YnhG family protein compare
Pf1N1B4_1617 -1.7 -6.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_4818 -1.7 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3696 -1.7 -9.4 FIG00955360: hypothetical protein compare
Pf1N1B4_974 -1.7 -4.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_3559 -1.7 -10.4 Aromatic amino acid transport protein AroP compare
Pf1N1B4_4156 -1.7 -2.6 putative secreted protein compare
Pf1N1B4_3143 -1.7 -3.7 RecA protein compare
Pf1N1B4_4238 -1.7 -2.9 hypothetical protein compare
Pf1N1B4_4208 -1.7 -2.5 organophosphate pesticide hydrolase compare
Pf1N1B4_1142 -1.7 -6.7 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB compare
Pf1N1B4_1095 -1.7 -9.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf1N1B4_407 -1.6 -2.3 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_3828 -1.6 -6.5 Ribonuclease E inhibitor RraA compare
Pf1N1B4_4027 -1.6 -2.2 hypothetical protein compare
Pf1N1B4_875 -1.6 -2.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_327 -1.6 -2.2 hypothetical protein compare
Pf1N1B4_348 -1.6 -3.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_1993 -1.6 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4485 -1.6 -2.2 membrane protein, putative compare
Pf1N1B4_5838 -1.5 -2.4 FIG00956589: hypothetical protein compare
Pf1N1B4_650 -1.5 -3.7 FIG001943: hypothetical protein YajQ compare
Pf1N1B4_1511 -1.5 -2.3 FIG027190: Putative transmembrane protein compare
Pf1N1B4_4990 -1.5 -2.6 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_4250 -1.5 -2.0 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1475 -1.5 -3.7 FIG00962376: hypothetical protein compare
Pf1N1B4_201 -1.5 -2.8 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_1882 -1.5 -12.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf1N1B4_3368 -1.5 -2.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_3590 -1.5 -5.7 hypothetical protein compare
Pf1N1B4_5871 -1.5 -2.2 FIG00963848: hypothetical protein compare
Pf1N1B4_5498 -1.5 -1.6 hypothetical protein compare
Pf1N1B4_644 -1.5 -2.3 Cold shock protein CspC compare
Pf1N1B4_695 -1.5 -1.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_197 -1.4 -2.4 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_3831 -1.4 -6.4 CmpX compare
Pf1N1B4_2037 -1.4 -3.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_4318 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_262 -1.4 -10.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_2949 -1.4 -2.0 FIG00956396: hypothetical protein compare
Pf1N1B4_630 -1.4 -4.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf1N1B4_2227 -1.4 -1.9 FIG019278: hypothetical protein compare
Pf1N1B4_617 -1.4 -1.4 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_296 -1.4 -2.5 ABC transporter ATP-binding protein YvcR compare
Pf1N1B4_4761 -1.3 -3.0 hypothetical protein compare
Pf1N1B4_3829 -1.3 -7.3 Magnesium and cobalt transport protein CorA compare
Pf1N1B4_3356 -1.3 -2.0 Cyclic nucleotide-binding protein compare
Pf1N1B4_3361 -1.3 -7.8 Outer membrane receptor proteins, likely involved in siderophore uptake @ TonB-dependent siderophore receptor compare
Pf1N1B4_3325 -1.3 -1.9 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_3446 -1.3 -2.3 Putative GTPases (G3E family) compare
Pf1N1B4_5769 -1.3 -1.8 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_1445 -1.3 -6.5 lipoprotein, putative compare
Pf1N1B4_4643 -1.3 -6.4 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf1N1B4_2035 -1.3 -4.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_4154 -1.3 -2.4 Transcriptional regulator, AraC family compare
Pf1N1B4_5815 -1.3 -2.2 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_4007 -1.3 -2.0 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_76 -1.2 -2.3 ATP binding protein compare
Pf1N1B4_740 -1.2 -2.2 Leucyl-tRNA synthetase compare
Pf1N1B4_1615 -1.2 -2.9 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_4419 -1.2 -1.9 Organosulfonate utilization protein SsuF compare
Pf1N1B4_3991 -1.2 -1.8 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_4602 -1.2 -1.9 Transcriptional regulators, LysR family compare
Pf1N1B4_414 -1.2 -3.4 transcriptional regulator compare
Pf1N1B4_4326 -1.2 -2.7 N-carbamoylputrescine amidase (3.5.1.53) compare
Pf1N1B4_4777 -1.2 -2.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_3345 -1.2 -5.9 Ribonuclease D (EC 3.1.26.3) compare
Pf1N1B4_3815 -1.2 -3.2 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf1N1B4_1008 -1.2 -1.7 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_717 -1.2 -5.2 Iron-regulated protein A precursor compare
Pf1N1B4_2117 -1.2 -7.9 Ribonuclease PH (EC 2.7.7.56) compare
Pf1N1B4_1057 -1.2 -1.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1294 -1.2 -2.1 VgrG protein compare
Pf1N1B4_888 -1.2 -3.6 Transglycosylase, Slt family compare
Pf1N1B4_4882 -1.2 -3.1 Transcriptional regulator MexT compare
Pf1N1B4_3074 -1.2 -1.7 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_2283 -1.2 -1.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_723 -1.2 -6.6 two-component system sensor protein compare
Pf1N1B4_5995 -1.2 -2.0 Transporter, MFS superfamily compare
Pf1N1B4_3836 -1.1 -1.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_1847 -1.1 -3.5 hypothetical protein compare
Pf1N1B4_598 -1.1 -3.3 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_1509 -1.1 -5.3 Putative histidine ammonia-lyase protein compare
Pf1N1B4_3775 -1.1 -1.0 FIG00956876: hypothetical protein compare
Pf1N1B4_5899 -1.1 -1.3 FIG00954746: hypothetical protein compare
Pf1N1B4_5109 -1.1 -2.4 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_1005 -1.1 -2.7 probable membrane protein YPO0899 compare
Pf1N1B4_1153 -1.1 -2.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_3002 -1.1 -2.8 hypothetical protein compare
Pf1N1B4_825 -1.1 -1.9 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf1N1B4_2739 -1.1 -1.8 acetyltransferase, GNAT family compare
Pf1N1B4_4897 -1.1 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_2090 -1.1 -2.8 FIG00959590: hypothetical protein compare
Pf1N1B4_4921 -1.0 -1.9 Haloacid dehalogenase, type II compare
Pf1N1B4_275 -1.0 -2.1 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_4621 -1.0 -2.5 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_419 -1.0 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_2724 -1.0 -4.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_1257 -1.0 -2.6 Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase compare
Pf1N1B4_2208 -1.0 -4.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_4731 -1.0 -2.9 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_29 -1.0 -1.6 FIG00967200: hypothetical protein compare
Pf1N1B4_431 -1.0 -3.4 hypothetical protein compare
Pf1N1B4_4253 -1.0 -1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4438 -1.0 -1.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_4362 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_1612 -1.0 -1.9 FIG00955429: hypothetical protein compare
Pf1N1B4_5520 -1.0 -3.0 General secretion pathway protein E compare
Pf1N1B4_4592 -1.0 -1.7 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_4569 -1.0 -2.1 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_1888 -1.0 -3.3 Glutamate-aspartate carrier protein compare
Pf1N1B4_3341 -1.0 -3.0 Cyanate transport protein CynX compare
Pf1N1B4_751 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_4051 -1.0 -2.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2233 -1.0 -4.3 Ferric iron ABC transporter, permease protein compare
Pf1N1B4_823 -1.0 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2484 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_4866 -1.0 -1.2 hypothetical protein compare
Pf1N1B4_3750 -1.0 -2.3 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_2611 -1.0 -6.5 Excinuclease ABC subunit A compare
Pf1N1B4_4494 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_5330 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_2003 -0.9 -2.9 FIG00956226: hypothetical protein compare
Pf1N1B4_4699 -0.9 -1.8 Multidrug translocase MdfA compare
Pf1N1B4_2568 -0.9 -2.3 Translation elongation factor Tu compare
Pf1N1B4_3906 -0.9 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2249 -0.9 -2.0 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf1N1B4_5275 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_1311 -0.9 -2.4 Probable transmembrane protein compare
Pf1N1B4_765 -0.9 -1.4 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_981 -0.9 -2.2 UPF0246 protein YaaA compare
Pf1N1B4_5823 -0.9 -1.0 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_2381 -0.9 -6.5 Protein yceI precursor compare
Pf1N1B4_6035 -0.9 -1.8 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_4336 -0.9 -1.9 FMN-dependent NADH-azoreductase compare


Specific Phenotypes

For 10 genes in this experiment

For stress Rifampicin in Pseudomonas fluorescens FW300-N1B4

For stress Rifampicin across organisms