Experiment set3IT018 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Rifampicin 0.004 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_1457 +2.6 17.8 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_1456 +2.5 11.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_1461 +2.4 9.4 Protein fixF compare
Pf1N1B4_1464 +2.3 13.1 Glycosyl transferase compare
Pf1N1B4_1463 +2.3 15.5 hypothetical protein compare
Pf1N1B4_339 +1.8 4.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_4041 +1.7 4.5 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_5014 +1.6 3.4 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_2807 +1.5 4.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_5509 +1.4 3.1 hypothetical protein compare
Pf1N1B4_1458 +1.4 8.2 Probable transcription regulator Mig-14 compare
Pf1N1B4_649 +1.4 4.9 Small-conductance mechanosensitive channel compare
Pf1N1B4_2270 +1.3 4.7 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_3153 +1.3 3.3 hypothetical protein compare
Pf1N1B4_3708 +1.3 1.8 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf1N1B4_733 +1.2 2.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_78 +1.2 2.3 FIG00956937: hypothetical protein compare
Pf1N1B4_4030 +1.2 3.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_241 +1.2 2.8 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_1554 +1.2 7.4 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_5604 +1.2 3.4 Permeases of the major facilitator superfamily compare
Pf1N1B4_74 +1.1 1.8 hypothetical protein compare
Pf1N1B4_1191 +1.1 3.2 hypothetical protein compare
Pf1N1B4_5877 +1.1 3.6 FIG00967533: hypothetical protein compare
Pf1N1B4_973 +1.1 9.6 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_4134 +1.1 2.8 Na+ driven multidrug efflux pump compare
Pf1N1B4_5266 +1.1 1.9 hypothetical protein compare
Pf1N1B4_1465 +1.1 8.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_4604 +1.1 2.3 FMN reductase, NADPH-dependent compare
Pf1N1B4_4725 +1.0 3.2 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_4436 +1.0 2.6 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_4397 +1.0 3.2 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_3111 +1.0 2.4 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_473 +1.0 3.2 DNA internalization-related competence protein ComEC/Rec2 compare
Pf1N1B4_2511 +1.0 3.1 hypothetical protein compare
Pf1N1B4_4177 +1.0 2.1 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_972 +1.0 9.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_971 +1.0 7.7 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_4123 +1.0 2.0 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_4212 +1.0 2.2 Gfa-like protein compare
Pf1N1B4_969 +1.0 9.2 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_6050 +1.0 2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_476 +1.0 2.7 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_3168 +0.9 3.0 AmpG permease compare
Pf1N1B4_5820 +0.9 3.3 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_475 +0.9 3.2 ABC-type multidrug transport system, permease component compare
Pf1N1B4_572 +0.9 7.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_625 +0.9 2.8 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_3501 +0.9 4.3 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_1627 +0.9 3.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2412 +0.9 3.1 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_4872 +0.9 1.6 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_4287 +0.9 4.1 Inositol transport system permease protein compare
Pf1N1B4_1096 +0.9 4.1 Septum formation protein Maf compare
Pf1N1B4_4765 +0.9 1.1 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_2352 +0.9 5.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1115 +0.9 5.7 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_591 +0.9 4.5 Aldose 1-epimerase compare
Pf1N1B4_2939 +0.9 4.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_4241 +0.9 3.8 Dienelactone hydrolase family compare
Pf1N1B4_4762 +0.9 2.6 hypothetical protein compare
Pf1N1B4_3413 +0.8 1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_49 +0.8 2.9 hypothetical protein compare
Pf1N1B4_4772 +0.8 3.3 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_4920 +0.8 2.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_5072 +0.8 2.0 Glycerol-3-phosphate regulon repressor compare
Pf1N1B4_2860 +0.8 4.3 FIG00954153: hypothetical protein compare
Pf1N1B4_3802 +0.8 1.7 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_5710 +0.8 1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_5057 +0.8 1.8 mandelate racemase family protein Pfl_3283 compare
Pf1N1B4_4039 +0.8 4.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_3878 +0.8 4.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_1116 +0.8 6.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_2047 +0.8 2.8 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_328 +0.8 2.6 Glucosyltransferase (side chain biosynthesis) (EC 2.4.1.-) compare
Pf1N1B4_6029 +0.8 3.7 uridine nucleosidase (EC 3.2.2.3) (from data) compare
Pf1N1B4_1668 +0.8 3.3 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2485 +0.8 2.0 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_1181 +0.8 1.9 UPF0125 protein yfjF compare
Pf1N1B4_4505 +0.8 2.3 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_767 +0.8 3.9 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_4425 +0.8 2.8 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_4458 +0.8 2.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_1669 +0.8 4.3 ADP compounds hydrolase NudE (EC 3.6.1.-) compare
Pf1N1B4_608 +0.8 1.9 Heme oxygenase HemO, associated with heme uptake compare
Pf1N1B4_1466 +0.8 3.0 hypothetical protein compare
Pf1N1B4_1626 +0.8 4.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5353 +0.8 2.5 hypothetical protein compare
Pf1N1B4_5476 +0.8 1.2 hypothetical protein compare
Pf1N1B4_5619 +0.8 2.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_4972 +0.8 1.4 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_5631 +0.8 2.4 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2668 +0.8 5.4 DedA protein compare
Pf1N1B4_3966 +0.8 1.4 serine/threonine protein kinase compare
Pf1N1B4_4482 +0.8 2.7 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_2969 +0.8 6.2 ATPase, AFG1 family compare
Pf1N1B4_1146 +0.8 4.4 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Pf1N1B4_2858 +0.8 5.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4516 +0.8 1.8 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_5620 +0.8 1.9 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_4481 +0.8 1.3 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_2854 +0.8 3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_1833 +0.8 2.1 FIG00953718: hypothetical protein compare
Pf1N1B4_2545 +0.8 5.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_970 +0.8 5.5 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_106 +0.7 2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5590 +0.7 1.8 Trans-feruloyl-CoA synthase (EC 6.2.1.34) compare
Pf1N1B4_5666 +0.7 1.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_515 +0.7 2.5 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf1N1B4_2171 +0.7 2.5 Tyrosine recombinase XerC compare
Pf1N1B4_5914 +0.7 2.5 Transcriptional regulator, LysR family compare
Pf1N1B4_2552 +0.7 2.5 OsmC/Ohr family protein compare
Pf1N1B4_4593 +0.7 3.2 ABC transporter, periplasmic substrate-binding protein compare
Pf1N1B4_4806 +0.7 1.8 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_4247 +0.7 2.2 D-aminopeptidase (EC 3.4.11.19) compare
Pf1N1B4_4523 +0.7 1.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3808 +0.7 2.5 hydrolase, haloacid dehalogenase-like family compare
Pf1N1B4_3407 +0.7 1.7 Sterol desaturase, putative compare
Pf1N1B4_2674 +0.7 0.8 hypothetical protein compare
Pf1N1B4_2980 +0.7 1.7 Acetylornithine aminotransferase (EC 2.6.1.11) compare
Pf1N1B4_5674 +0.7 1.8 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_611 +0.7 1.5 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_3056 +0.7 2.2 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_5371 +0.7 1.3 hypothetical protein compare
Pf1N1B4_1958 +0.7 1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_366 +0.7 4.3 FIG00954136: hypothetical protein compare
Pf1N1B4_541 +0.7 2.0 hypothetical protein compare
Pf1N1B4_4771 +0.7 1.9 Probable transmembrane protein compare
Pf1N1B4_2935 +0.7 1.8 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_2054 +0.7 1.8 FIG00964469: hypothetical protein compare
Pf1N1B4_5146 +0.7 1.5 Chromosome initiation inhibitor compare
Pf1N1B4_5912 +0.7 1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5808 +0.7 2.8 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_882 +0.7 2.1 carbonic anhydrase, family 3 compare
Pf1N1B4_5224 +0.7 2.0 tRNA-Arg-CCT compare
Pf1N1B4_2317 +0.7 2.5 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Pf1N1B4_115 +0.7 1.1 Membrane protein mosC compare
Pf1N1B4_1315 +0.7 4.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_4787 +0.7 2.8 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf1N1B4_5989 +0.7 2.2 FIG067310: hypothetical protein compare
Pf1N1B4_1845 +0.7 2.0 FIG00954395: hypothetical protein compare
Pf1N1B4_4019 +0.7 2.4 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_4511 +0.7 2.6 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) compare
Pf1N1B4_4669 +0.7 1.1 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_691 +0.7 1.9 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_1332 +0.7 1.2 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_3467 +0.7 1.4 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_5834 +0.7 1.4 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_5811 +0.7 2.5 FIG00958502: hypothetical protein compare
Pf1N1B4_2224 +0.7 1.5 FIG00953390: hypothetical protein compare
Pf1N1B4_5762 +0.7 1.7 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_4613 +0.7 1.2 FIG00953934: hypothetical protein compare
Pf1N1B4_5791 +0.7 2.1 hypothetical protein compare
Pf1N1B4_1535 +0.7 2.7 hypothetical protein compare
Pf1N1B4_4506 +0.7 1.3 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_5920 +0.7 1.7 Transcriptional regulator, AraC family compare
Pf1N1B4_5433 +0.7 2.2 hypothetical protein compare
Pf1N1B4_5152 +0.7 1.8 hypothetical protein compare
Pf1N1B4_753 +0.7 1.4 hypothetical protein compare
Pf1N1B4_2453 +0.7 1.5 hypothetical protein compare
Pf1N1B4_5833 +0.7 1.2 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_3967 +0.7 2.4 AFG1-like ATPase compare
Pf1N1B4_5136 +0.7 3.4 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_2940 +0.7 3.1 hypothetical protein compare
Pf1N1B4_5386 +0.7 1.4 hypothetical protein compare
Pf1N1B4_899 +0.7 1.4 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_3876 +0.7 3.7 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_4192 +0.7 1.2 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_5074 +0.7 1.7 Gluconate permease compare
Pf1N1B4_4322 +0.7 2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_202 +0.7 1.8 ABC transporter in pyoverdin gene cluster, permease component compare
Pf1N1B4_5938 +0.6 2.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf1N1B4_4605 +0.6 1.6 FIG00953564: hypothetical protein compare
Pf1N1B4_678 +0.6 3.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_2954 +0.6 2.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1107 +0.6 2.1 D-galactarate dehydratase (EC 4.2.1.42) compare
Pf1N1B4_5367 +0.6 2.8 hypothetical protein compare
Pf1N1B4_1353 +0.6 1.9 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_1105 +0.6 1.6 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_1916 +0.6 1.4 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_833 +0.6 3.4 PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Pf1N1B4_2880 +0.6 4.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_31 +0.6 2.0 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf1N1B4_4835 +0.6 1.1 Carbon starvation protein A compare
Pf1N1B4_4587 +0.6 1.4 probable dioxygenase compare
Pf1N1B4_2682 +0.6 1.2 Antiholin-like protein LrgA compare
Pf1N1B4_573 +0.6 4.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_108 +0.6 1.6 FIG00954456: hypothetical protein compare
Pf1N1B4_606 +0.6 1.6 Iron siderophore sensor protein compare
Pf1N1B4_929 +0.6 1.4 FIG00964214: hypothetical protein compare
Pf1N1B4_5135 +0.6 2.1 Transcriptional regulator, TetR family compare
Pf1N1B4_1891 +0.6 1.2 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_3546 +0.6 1.0 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_3936 +0.6 1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_5348 +0.6 1.3 hypothetical protein compare
Pf1N1B4_3494 +0.6 1.6 Flavoprotein WrbA compare
Pf1N1B4_2303 +0.6 4.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3753 +0.6 2.1 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_3524 +0.6 1.7 FIG00955363: hypothetical protein compare
Pf1N1B4_5671 +0.6 2.7 Exoenzymes regulatory protein AepA precursor compare


Specific Phenotypes

For 10 genes in this experiment

For stress Rifampicin in Pseudomonas fluorescens FW300-N1B4

For stress Rifampicin across organisms