Experiment set3IT018 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Phenylalanine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.0 -5.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS01385 -7.0 -4.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS05860 -6.7 -4.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS18305 -6.6 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS30655 -6.3 -4.3 LysR family transcriptional regulator compare
RR42_RS14390 -5.7 -4.0 3-isopropylmalate dehydratase compare
RR42_RS06485 -5.7 -5.6 chorismate synthase compare
RR42_RS19005 -5.7 -5.5 3-dehydroquinate synthase compare
RR42_RS16250 -5.5 -6.5 sulfate adenylyltransferase compare
RR42_RS16255 -5.3 -8.0 sulfate adenylyltransferase compare
RR42_RS14320 -5.2 -5.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS33255 -5.2 -3.2 protein-tyrosine phosphatase compare
RR42_RS01435 -5.2 -3.5 short-chain dehydrogenase compare
RR42_RS14400 -4.9 -4.8 isopropylmalate isomerase compare
RR42_RS18300 -4.8 -5.7 anthranilate synthase subunit II compare
RR42_RS01160 -4.7 -10.5 homoserine O-acetyltransferase compare
RR42_RS20365 -4.7 -10.8 phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) conserved
RR42_RS04475 -4.5 -9.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS18295 -4.5 -12.3 anthranilate synthase component I compare
RR42_RS07555 -4.5 -3.0 potassium transporter Kup compare
RR42_RS33240 -4.4 -14.7 GDP-L-fucose synthase compare
RR42_RS33260 -4.3 -8.2 multidrug MFS transporter compare
RR42_RS16270 -4.3 -9.3 sulfite reductase compare
RR42_RS04535 -4.2 -5.0 cysteine synthase compare
RR42_RS14365 -4.1 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS30660 -4.1 -8.8 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS33250 -4.0 -7.2 tyrosine protein kinase compare
RR42_RS14385 -3.9 -6.3 3-isopropylmalate dehydrogenase compare
RR42_RS24930 -3.8 -1.6 AraC family transcriptional regulator compare
RR42_RS33235 -3.7 -8.8 GDP-mannose 4,6-dehydratase compare
RR42_RS16275 -3.7 -4.4 membrane protein compare
RR42_RS01775 -3.7 -6.2 glutamate--cysteine ligase compare
RR42_RS33210 -3.6 -8.0 teichoic acid biosynthesis protein compare
RR42_RS01845 -3.6 -2.1 glycerol-3-phosphate dehydrogenase compare
RR42_RS16280 -3.5 -6.5 transcriptional regulator compare
RR42_RS20360 -3.5 -2.1 AsnC family transcriptional regulator compare
RR42_RS33355 -3.5 -6.1 membrane protein compare
RR42_RS16245 -3.3 -5.1 uroporphyrin-III methyltransferase compare
RR42_RS15000 -3.3 -2.3 GTP cyclohydrolase compare
RR42_RS01290 -3.3 -5.8 thiamine biosynthesis protein ThiC compare
RR42_RS17645 -3.3 -6.0 shikimate dehydrogenase compare
RR42_RS33245 -3.3 -9.3 mannose-1-phosphate guanyltransferase compare
RR42_RS11770 -3.2 -3.1 cyclase compare
RR42_RS33500 -3.2 -7.3 4-hydroxyphenylpyruvate dioxygenase compare
RR42_RS01780 -3.2 -8.0 glutathione synthetase compare
RR42_RS33490 -3.2 -11.4 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (from data) conserved
RR42_RS21220 -3.1 -3.6 iron transporter FeoB compare
RR42_RS31270 -3.1 -5.7 fumarylacetoacetase compare
RR42_RS14360 -3.0 -1.6 tryptophan synthase subunit alpha compare
RR42_RS01970 -2.9 -8.3 maleylacetoacetate isomerase conserved
RR42_RS33505 -2.9 -5.3 AsnC family transcriptional regulator compare
RR42_RS17720 -2.7 -3.2 sugar kinase compare
RR42_RS03080 -2.7 -3.2 recombinase RecA compare
RR42_RS05965 -2.7 -2.2 malonic semialdehyde reductase compare
RR42_RS30640 -2.7 -7.2 DNA mismatch repair protein MutT compare
RR42_RS15890 -2.7 -7.1 heme biosynthesis protein HemY compare
RR42_RS12040 -2.6 -12.1 MFS transporter compare
RR42_RS15895 -2.4 -6.8 uroporphyrinogen III methyltransferase compare
RR42_RS12925 -2.4 -2.4 ATPase compare
RR42_RS20370 -2.4 -1.4 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS02500 -2.4 -2.1 TetR family transcriptional regulator compare
RR42_RS16240 -2.3 -1.2 cobalamin biosynthesis protein CbiX compare
RR42_RS14965 -2.2 -4.4 hypothetical protein compare
RR42_RS04770 -2.1 -1.7 methylglyoxal synthase compare
RR42_RS06020 -2.1 -1.2 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS17355 -2.0 -1.4 hypothetical protein compare
RR42_RS04700 -2.0 -1.6 ribonuclease G compare
RR42_RS21505 -2.0 -1.9 hypothetical protein compare
RR42_RS31275 -1.9 -6.1 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) compare
RR42_RS13800 -1.9 -7.4 formyltetrahydrofolate deformylase compare
RR42_RS18855 -1.8 -3.8 preprotein translocase compare
RR42_RS22590 -1.7 -1.4 organic hydroperoxide resistance protein compare
RR42_RS12590 -1.7 -1.2 50S ribosomal protein L9 compare
RR42_RS20205 -1.7 -2.5 chromosome partitioning protein compare
RR42_RS12185 -1.7 -1.8 LysR family transcriptional regulator compare
RR42_RS04895 -1.7 -9.2 serine/threonine protein phosphatase compare
RR42_RS33495 -1.7 -11.1 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS08770 -1.6 -1.6 2-nitropropane dioxygenase compare
RR42_RS18140 -1.6 -1.1 MarR family transcriptional regulator compare
RR42_RS01380 -1.6 -1.5 membrane protein compare
RR42_RS33575 -1.6 -2.4 hypothetical protein compare
RR42_RS16675 -1.5 -1.8 hypothetical protein compare
RR42_RS02045 -1.5 -10.0 GTPase compare
RR42_RS00725 -1.5 -3.5 hypothetical protein compare
RR42_RS06095 -1.5 -4.5 hypothetical protein compare
RR42_RS02705 -1.4 -2.3 Holliday junction DNA helicase RuvA compare
RR42_RS10855 -1.4 -1.4 diguanylate phosphodiesterase compare
RR42_RS30310 -1.4 -2.3 signal transduction protein compare
RR42_RS16460 -1.4 -3.3 cupin compare
RR42_RS06335 -1.4 -1.9 cyclophilin compare
RR42_RS17060 -1.4 -9.0 histidine kinase compare
RR42_RS26935 -1.4 -4.7 farnesyl-diphosphate farnesyltransferase compare
RR42_RS11790 -1.4 -6.9 phosphoenolpyruvate synthase compare
RR42_RS05920 -1.4 -4.0 HrcA family transcriptional regulator compare
RR42_RS01920 -1.3 -2.3 protoheme IX farnesyltransferase compare
RR42_RS02065 -1.3 -1.2 phosphate starvation-inducible protein PsiF compare
RR42_RS12980 -1.3 -4.4 chemotaxis protein CheY compare
RR42_RS07360 -1.3 -2.0 ATPase compare
RR42_RS24845 -1.3 -2.3 iditol 2-dehydrogenase compare
RR42_RS00430 -1.3 -2.8 histidine kinase compare
RR42_RS12345 -1.3 -1.9 hypothetical protein compare
RR42_RS24980 -1.2 -1.3 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS11795 -1.2 -2.8 PEP synthetase regulatory protein compare
RR42_RS11885 -1.2 -6.7 (protein-PII) uridylyltransferase compare
RR42_RS18990 -1.2 -9.0 glutamate synthase compare
RR42_RS22575 -1.2 -2.3 hypothetical protein compare
RR42_RS08350 -1.2 -2.0 hypothetical protein compare
RR42_RS33035 -1.2 -3.6 type IV secretion protein Rhs compare
RR42_RS17620 -1.2 -3.5 phosphatidylglycerophosphatase compare
RR42_RS04145 -1.2 -1.3 peptidase A24 compare
RR42_RS30690 -1.2 -4.9 hypothetical protein compare
RR42_RS28085 -1.2 -1.7 alkylphosphonate utilization protein PhnG compare
RR42_RS09585 -1.2 -3.2 Crp/Fnr family transcriptional regulator compare
RR42_RS15035 -1.2 -3.8 ZIP zinc transporter compare
RR42_RS08525 -1.2 -1.9 hypothetical protein compare
RR42_RS17055 -1.2 -4.9 LuxR family transcriptional regulator compare
RR42_RS15465 -1.1 -2.4 TonB-dependent receptor compare
RR42_RS26900 -1.1 -2.1 enoyl-CoA hydratase compare
RR42_RS15120 -1.1 -1.3 4-oxalocrotonate tautomerase compare
RR42_RS17390 -1.1 -3.9 ATP-dependent DNA helicase RecG compare
RR42_RS00115 -1.1 -1.6 hypothetical protein compare
RR42_RS12550 -1.1 -2.6 hypothetical protein compare
RR42_RS03630 -1.1 -1.0 cold-shock protein compare
RR42_RS09760 -1.1 -2.1 hypothetical protein compare
RR42_RS16335 -1.1 -1.8 hypothetical protein compare
RR42_RS18670 -1.1 -2.9 metal-dependent hydrolase compare
RR42_RS10415 -1.1 -1.0 hypothetical protein compare
RR42_RS14055 -1.1 -1.5 elongation factor 4 compare
RR42_RS14800 -1.1 -4.6 LysR family transcriptional regulator compare
RR42_RS12985 -1.1 -4.1 histidine kinase compare
RR42_RS02775 -1.0 -1.4 molecular chaperone SurA compare
RR42_RS27625 -1.0 -2.6 TetR family transcriptional regulator compare
RR42_RS04015 -1.0 -1.1 RNA polymerase sigma factor compare
RR42_RS16950 -1.0 -3.1 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS03940 -1.0 -1.6 membrane protein compare
RR42_RS18985 -1.0 -4.8 glutamate synthase compare
RR42_RS07295 -1.0 -2.2 LysR family transcriptional regulator compare
RR42_RS13620 -1.0 -1.0 ferredoxin compare
RR42_RS06255 -1.0 -1.9 lipoprotein compare
RR42_RS16220 -1.0 -1.0 DNA polymerase III subunit chi compare
RR42_RS03095 -1.0 -1.4 succinyl-CoA synthetase subunit beta compare
RR42_RS00285 -1.0 -1.5 thiamine biosynthesis protein ThiS compare
RR42_RS05955 -1.0 -0.8 hypothetical protein compare
RR42_RS03665 -1.0 -2.8 translation initiation factor IF-1 compare
RR42_RS16960 -0.9 -4.5 ABC transporter ATP-binding protein compare
RR42_RS22015 -0.9 -3.5 histidine kinase compare
RR42_RS20210 -0.9 -2.8 16S rRNA methyltransferase compare
RR42_RS13465 -0.9 -2.3 phosphate transporter permease subunit PstC compare
RR42_RS21605 -0.9 -1.4 S-adenosylhomocysteine hydrolase compare
RR42_RS13625 -0.9 -1.6 4-hydroxybenzoyl-CoA reductase compare
RR42_RS31950 -0.9 -2.2 ketoacid CoA transferase compare
RR42_RS16945 -0.9 -3.9 NAD-dependent dehydratase compare
RR42_RS24490 -0.9 -1.7 hypothetical protein compare
RR42_RS11655 -0.9 -0.8 heat-shock protein Hsp20 compare
RR42_RS14585 -0.9 -2.9 L-PSP family endoribonuclease compare
RR42_RS21695 -0.9 -2.9 DNA-binding protein compare
RR42_RS02270 -0.9 -1.2 hypothetical protein compare
RR42_RS03315 -0.9 -2.7 RND transporter MFP subunit compare
RR42_RS14790 -0.9 -4.1 cobalamin biosynthesis protein CobD compare
RR42_RS18940 -0.9 -1.4 ABC transporter ATP-binding protein compare
RR42_RS07225 -0.9 -1.0 hypothetical protein compare
RR42_RS31825 -0.9 -1.7 3-oxoacyl-ACP reductase compare
RR42_RS16975 -0.9 -4.2 ABC transporter permease compare
RR42_RS16965 -0.9 -2.9 ABC transporter compare
RR42_RS33215 -0.9 -5.6 transferase compare
RR42_RS06735 -0.9 -1.2 hypothetical protein compare
RR42_RS19805 -0.9 -2.6 enoyl-CoA hydratase compare
RR42_RS00715 -0.9 -1.8 ferritin compare
RR42_RS20295 -0.8 -1.6 alpha/beta hydrolase compare
RR42_RS17940 -0.8 -1.5 gamma-glutamyl kinase compare
RR42_RS12520 -0.8 -2.1 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS06635 -0.8 -3.0 MerR family transcriptional regulator compare
RR42_RS18935 -0.8 -3.6 metal-dependent hydrolase compare
RR42_RS22495 -0.8 -1.7 hypothetical protein compare
RR42_RS35750 -0.8 -4.1 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS19010 -0.8 -3.3 shikimate kinase compare
RR42_RS19885 -0.8 -1.1 aminoglycoside transporter compare
RR42_RS34565 -0.8 -1.4 GDP-mannose mannosyl hydrolase compare
RR42_RS17730 -0.8 -0.9 hypothetical protein compare
RR42_RS23880 -0.8 -1.2 hypothetical protein compare
RR42_RS06545 -0.8 -1.1 thioesterase compare
RR42_RS33600 -0.8 -0.9 oxidoreductase compare
RR42_RS11410 -0.8 -1.3 hypothetical protein compare
RR42_RS05665 -0.8 -0.9 urease accessory protein UreJ compare
RR42_RS14125 -0.8 -1.6 metal-binding protein compare
RR42_RS28145 -0.8 -2.6 LysR family transcriptional regulator compare
RR42_RS08575 -0.8 -0.9 tail protein compare
RR42_RS21040 -0.8 -0.7 hypothetical protein compare
RR42_RS21470 -0.8 -0.9 hypothetical protein compare
RR42_RS06655 -0.8 -1.7 hypothetical protein compare
RR42_RS07605 -0.8 -3.1 poly-beta-hydroxybutyrate polymerase compare
RR42_RS03395 -0.8 -2.1 membrane protein compare
RR42_RS31285 -0.8 -1.1 XRE family transcriptional regulator compare
RR42_RS02420 -0.8 -0.6 SAM-dependent methyltransferase compare
RR42_RS00545 -0.8 -2.4 transglutaminase compare
RR42_RS29280 -0.8 -0.7 hypothetical protein compare
RR42_RS21295 -0.8 -1.4 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS30545 -0.8 -1.2 cobalt-precorrin-6Y C(5)-methyltransferase compare
RR42_RS13015 -0.8 -3.4 fatty acid hydroxylase compare
RR42_RS35810 -0.8 -3.9 flagellar motor protein MotB compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Phenylalanine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Phenylalanine across organisms