Experiment set3IT018 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Phenylalanine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS29610 +1.9 3.1 cytochrome C2 compare
RR42_RS09375 +1.4 1.8 taurine dioxygenase compare
RR42_RS32960 +1.3 2.3 2-dehydropantoate 2-reductase compare
RR42_RS28695 +1.3 2.1 hypothetical protein compare
RR42_RS02545 +1.3 3.3 nitrate ABC transporter ATP-binding protein compare
RR42_RS04850 +1.2 3.1 hypothetical protein compare
RR42_RS21755 +1.2 1.9 shikimate dehydrogenase compare
RR42_RS24820 +1.2 2.6 hypothetical protein compare
RR42_RS23220 +1.2 3.2 MarR family transcriptional regulator compare
RR42_RS31715 +1.1 2.7 hypothetical protein compare
RR42_RS24520 +1.1 2.3 hypothetical protein compare
RR42_RS05500 +1.1 1.2 preprotein translocase subunit SecG compare
RR42_RS24760 +1.1 1.3 hypothetical protein compare
RR42_RS36400 +1.1 1.5 hypothetical protein compare
RR42_RS15525 +1.0 1.1 hypothetical protein compare
RR42_RS09565 +1.0 2.1 hypothetical protein compare
RR42_RS12130 +1.0 2.5 hypothetical protein compare
RR42_RS13730 +1.0 3.0 TetR family transcriptional regulator compare
RR42_RS16510 +1.0 1.7 hypothetical protein compare
RR42_RS37455 +1.0 2.1 hypothetical protein compare
RR42_RS35250 +0.9 1.9 alpha/beta hydrolase compare
RR42_RS23355 +0.9 1.9 flagellar biosynthetic protein FliQ compare
RR42_RS19655 +0.9 1.6 tRNA-Ala compare
RR42_RS31330 +0.9 1.1 LysR family transcriptional regulator compare
RR42_RS25600 +0.9 1.8 AraC family transcriptional regulator compare
RR42_RS26265 +0.9 1.3 hypothetical protein compare
RR42_RS07615 +0.9 2.0 3-ketoacyl-ACP reductase compare
RR42_RS35240 +0.9 1.2 acyl-CoA dehydrogenase compare
RR42_RS32870 +0.9 2.1 stress responsive protein compare
RR42_RS14520 +0.9 0.9 mobilization protein compare
RR42_RS36450 +0.9 1.5 acyl dehydratase compare
RR42_RS31465 +0.9 3.1 LysR family transcriptional regulator compare
RR42_RS22295 +0.8 1.4 methionine sulfoxide reductase B compare
RR42_RS32505 +0.8 2.3 sulfonate ABC transporter ATP-binding protein compare
RR42_RS10515 +0.8 2.5 fumarylacetoacetate hydrolase compare
RR42_RS05385 +0.8 1.7 LOG family protein compare
RR42_RS05620 +0.8 1.9 esterase compare
RR42_RS27245 +0.8 3.0 hypothetical protein compare
RR42_RS05425 +0.8 3.6 membrane protein compare
RR42_RS14395 +0.8 0.9 entericidin compare
RR42_RS34395 +0.7 1.4 hypothetical protein compare
RR42_RS27885 +0.7 1.5 2-keto-4-pentenoate hydratase compare
RR42_RS14335 +0.7 2.7 sporulation protein compare
RR42_RS16555 +0.7 2.4 cysteine hydrolase compare
RR42_RS22535 +0.7 1.0 ArsR family transcriptional regulator compare
RR42_RS37055 +0.7 1.2 hypothetical protein compare
RR42_RS25455 +0.7 1.0 acetyl-CoA acetyltransferase compare
RR42_RS12290 +0.7 2.4 alkanesulfonate monooxygenase compare
RR42_RS23845 +0.7 1.2 hypothetical protein compare
RR42_RS36560 +0.7 2.6 ABC transporter substrate-binding protein compare
RR42_RS17805 +0.7 0.8 hypothetical protein compare
RR42_RS01720 +0.7 1.6 membrane protein compare
RR42_RS13190 +0.7 2.8 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS19860 +0.7 0.7 tartronate semialdehyde reductase compare
RR42_RS15135 +0.7 1.9 LysR family transcriptional regulator compare
RR42_RS23270 +0.7 2.3 pyridoxamine 5'-phosphate oxidase compare
RR42_RS05100 +0.7 2.2 acetaldehyde dehydrogenase compare
RR42_RS32550 +0.7 2.4 taurine dioxygenase compare
RR42_RS06860 +0.7 0.8 hypothetical protein compare
RR42_RS04980 +0.7 1.4 hypothetical protein compare
RR42_RS06225 +0.7 3.5 phosphoesterase compare
RR42_RS10950 +0.6 1.7 GCN5 family acetyltransferase compare
RR42_RS26455 +0.6 0.7 amino acid ABC transporter ATP-binding protein compare
RR42_RS22680 +0.6 1.6 enoyl-CoA hydratase compare
RR42_RS15030 +0.6 2.8 3-mercaptopyruvate sulfurtransferase compare
RR42_RS01285 +0.6 2.4 acyl-CoA dehydrogenase compare
RR42_RS08260 +0.6 1.2 hypothetical protein compare
RR42_RS18965 +0.6 3.9 ABC transporter permease compare
RR42_RS14235 +0.6 0.9 hypothetical protein compare
RR42_RS14915 +0.6 2.0 hypothetical protein compare
RR42_RS15225 +0.6 0.9 RNA-binding protein compare
RR42_RS24460 +0.6 1.6 hypothetical protein compare
RR42_RS20815 +0.6 2.3 phenylacetic acid degradation protein PaaI compare
RR42_RS36630 +0.6 2.5 ABC transporter substrate-binding protein compare
RR42_RS31885 +0.6 1.5 sialidase compare
RR42_RS33850 +0.6 1.2 hypothetical protein compare
RR42_RS27905 +0.6 2.7 AraC family transcriptional regulator compare
RR42_RS30965 +0.6 2.2 hypothetical protein compare
RR42_RS34060 +0.6 1.2 alpha/beta hydrolase compare
RR42_RS01330 +0.6 2.7 Fis family transcriptional regulator compare
RR42_RS16685 +0.6 1.6 tRNA-Leu compare
RR42_RS19635 +0.6 1.1 hypothetical protein compare
RR42_RS29365 +0.6 1.3 ArsR family transcriptional regulator compare
RR42_RS21375 +0.6 2.8 succinate-semialdehyde dehydrogenase compare
RR42_RS19555 +0.6 1.5 hypothetical protein compare
RR42_RS18960 +0.6 4.3 ABC transporter substrate-binding protein compare
RR42_RS35220 +0.6 0.8 peptide ABC transporter ATP-binding protein compare
RR42_RS11840 +0.6 2.5 zinc metalloprotease compare
RR42_RS02935 +0.6 2.1 malonate decarboxylase subunit epsilon compare
RR42_RS17970 +0.6 0.7 hypothetical protein compare
RR42_RS12085 +0.6 1.6 glyoxalase compare
RR42_RS05085 +0.6 1.6 2-aminomuconate deaminase compare
RR42_RS31820 +0.6 2.1 short-chain dehydrogenase compare
RR42_RS35965 +0.6 1.9 hypothetical protein compare
RR42_RS09380 +0.6 2.6 quinone oxidoreductase compare
RR42_RS11230 +0.6 2.0 peptide ABC transporter ATP-binding protein compare
RR42_RS20640 +0.6 2.1 TetR family transcriptional regulator compare
RR42_RS17235 +0.6 3.0 poly(A) polymerase compare
RR42_RS00840 +0.6 2.7 short-chain dehydrogenase compare
RR42_RS32740 +0.6 0.7 enoyl-CoA hydratase compare
RR42_RS36010 +0.6 1.5 peptidase compare
RR42_RS36495 +0.6 1.4 enoyl-CoA hydratase compare
RR42_RS13745 +0.6 2.5 LysR family transcriptional regulator compare
RR42_RS00300 +0.6 2.3 kinase compare
RR42_RS15795 +0.6 2.7 spore coat protein compare
RR42_RS32735 +0.6 2.0 3-methylcrotonyl-CoA carboxylase compare
RR42_RS31900 +0.6 1.3 short-chain dehydrogenase compare
RR42_RS07470 +0.6 4.4 arginyl-tRNA-protein transferase compare
RR42_RS00910 +0.6 2.3 hypothetical protein compare
RR42_RS03505 +0.6 1.8 replication/virulence associated protein compare
RR42_RS00975 +0.6 2.0 MBL fold metallo-hydrolase compare
RR42_RS08465 +0.6 1.9 hypothetical protein compare
RR42_RS07900 +0.6 1.5 allantoate amidohydrolase compare
RR42_RS17230 +0.6 2.9 phosphoserine phosphatase compare
RR42_RS21460 +0.6 2.3 hypothetical protein compare
RR42_RS15425 +0.6 1.9 membrane protein compare
RR42_RS03085 +0.6 0.6 RecX family transcriptional regulator compare
RR42_RS35135 +0.6 3.0 transcriptional regulator compare
RR42_RS20570 +0.6 1.2 biopolymer transporter ExbD compare
RR42_RS31915 +0.6 1.4 short-chain dehydrogenase compare
RR42_RS13365 +0.6 1.2 peptidase P60 compare
RR42_RS03905 +0.6 2.6 hypothetical protein compare
RR42_RS14905 +0.6 1.9 hypothetical protein compare
RR42_RS19490 +0.5 1.8 general secretion pathway protein GspI compare
RR42_RS33825 +0.5 1.9 LysR family transcriptional regulator compare
RR42_RS34690 +0.5 1.4 permease compare
RR42_RS25965 +0.5 2.2 LuxR family transcriptional regulator compare
RR42_RS37435 +0.5 1.7 elongation factor G compare
RR42_RS05115 +0.5 0.7 LysR family transcriptional regulator compare
RR42_RS02555 +0.5 1.9 transcriptional regulator compare
RR42_RS37120 +0.5 2.9 acetyltransferase compare
RR42_RS17590 +0.5 0.9 16S rRNA methyltransferase compare
RR42_RS35600 +0.5 1.6 hypothetical protein compare
RR42_RS22775 +0.5 1.7 3-isopropylmalate dehydratase compare
RR42_RS02150 +0.5 1.4 membrane protein compare
RR42_RS23970 +0.5 1.0 hypothetical protein compare
RR42_RS29545 +0.5 1.4 mannosyltransferase compare
RR42_RS23650 +0.5 1.6 flagellar protein compare
RR42_RS31565 +0.5 2.5 50S ribosomal protein L21 compare
RR42_RS34570 +0.5 0.9 hypothetical protein compare
RR42_RS09780 +0.5 0.9 hypothetical protein compare
RR42_RS19830 +0.5 1.5 LysR family transcriptional regulator compare
RR42_RS23765 +0.5 1.5 tRNA-Gly compare
RR42_RS18425 +0.5 0.7 hypothetical protein compare
RR42_RS07245 +0.5 1.2 hypothetical protein compare
RR42_RS16350 +0.5 1.8 hypothetical protein compare
RR42_RS18730 +0.5 0.7 hypothetical protein compare
RR42_RS32730 +0.5 3.2 terpene utilization protein AtuA compare
RR42_RS33120 +0.5 2.5 histone acetyltransferase compare
RR42_RS08670 +0.5 1.4 ATP synthase I compare
RR42_RS32850 +0.5 1.6 universal stress protein UspA compare
RR42_RS14985 +0.5 0.9 30S ribosomal protein S21 compare
RR42_RS04325 +0.5 1.6 membrane protein compare
RR42_RS19895 +0.5 0.8 elongation factor GreAB compare
RR42_RS06760 +0.5 2.8 hypothetical protein compare
RR42_RS14795 +0.5 3.0 quercetin 2,3-dioxygenase compare
RR42_RS09510 +0.5 3.2 hypothetical protein compare
RR42_RS32670 +0.5 0.8 phenol hydroxylase compare
RR42_RS09290 +0.5 0.9 hypothetical protein compare
RR42_RS27705 +0.5 1.4 NAD-dependent deacetylase compare
RR42_RS04110 +0.5 1.3 pilus assembly protein TadG compare
RR42_RS21035 +0.5 1.6 GntR family transcriptional regulator compare
RR42_RS28170 +0.5 3.6 thioredoxin reductase compare
RR42_RS12490 +0.5 2.6 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS04060 +0.5 0.8 hypothetical protein compare
RR42_RS33070 +0.5 1.0 oxidoreductase compare
RR42_RS22600 +0.5 0.9 heavy metal resistance protein CzcE compare
RR42_RS09060 +0.5 1.2 glucose-6-phosphate isomerase compare
RR42_RS30140 +0.5 2.1 gluconolaconase compare
RR42_RS14880 +0.5 0.9 hypothetical protein compare
RR42_RS14930 +0.5 1.4 biopolymer transporter ExbD compare
RR42_RS12790 +0.5 1.0 ACP phosphodiesterase compare
RR42_RS35275 +0.5 1.3 membrane protein compare
RR42_RS09325 +0.5 1.3 citrate synthase compare
RR42_RS12090 +0.5 1.8 monooxygenase compare
RR42_RS24895 +0.5 1.9 enoyl-CoA hydratase compare
RR42_RS15240 +0.5 1.8 membrane protein compare
RR42_RS07940 +0.5 1.5 ABC transporter permease compare
RR42_RS04090 +0.5 1.3 type II secretion system protein compare
RR42_RS27710 +0.5 1.5 LysR family transcriptional regulator compare
RR42_RS20855 +0.5 2.1 cold-shock protein compare
RR42_RS07925 +0.5 1.8 amidase compare
RR42_RS30485 +0.5 2.0 hypothetical protein compare
RR42_RS19750 +0.5 0.5 MBL fold metallo-hydrolase compare
RR42_RS30450 +0.5 1.7 cation:proton antiporter compare
RR42_RS34965 +0.5 1.6 dioxygenase compare
RR42_RS34180 +0.5 2.5 hypothetical protein compare
RR42_RS07735 +0.5 1.3 histidine kinase compare
RR42_RS09850 +0.5 1.3 hypothetical protein compare
RR42_RS33430 +0.5 0.8 LysR family transcriptional regulator compare
RR42_RS00740 +0.5 2.0 ABC transporter substrate-binding protein compare
RR42_RS15720 +0.5 2.1 hypothetical protein compare
RR42_RS10835 +0.5 2.1 hypothetical protein compare
RR42_RS35210 +0.5 2.2 TetR family transcriptional regulator compare
RR42_RS05595 +0.5 2.1 acyl-CoA dehydrogenase compare
RR42_RS06440 +0.5 2.7 membrane protein compare
RR42_RS31685 +0.5 1.4 Asp/Glu/hydantoin racemase compare
RR42_RS04675 +0.5 1.4 alkylhydroperoxidase compare
RR42_RS09255 +0.5 1.2 copper resistance protein CopQ compare
RR42_RS04335 +0.5 2.8 iron deficiency-induced protein A compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Phenylalanine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Phenylalanine across organisms