Experiment set3IT018 for Caulobacter crescentus NA1000

Compare to:

PYE with Cobalt chloride hexahydrate 0.08 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01010 +4.4 29.8 histidine ammonia-lyase compare
CCNA_R0037 +4.0 19.0 tRNA-Glu compare
CCNA_02000 +4.0 6.6 SSU ribosomal protein S2P compare
CCNA_01324 +3.7 13.5 LSU ribosomal protein L30P compare
CCNA_03498 +3.6 26.9 MarR-family transcriptional regulator compare
CCNA_01583 +3.6 8.1 phosphate-binding protein compare
CCNA_00735 +3.5 9.6 beta-barrel assembly machine (BAM) protein BamF compare
CCNA_02135 +3.5 21.5 6-phosphogluconolactonase compare
CCNA_01063 +3.4 15.4 UDP-perosamine 4-acetyl transferase compare
CCNA_01739 +3.3 18.7 LSU ribosomal protein L9P compare
CCNA_01724 +3.3 7.4 hypothetical protein compare
CCNA_01222 +3.1 11.7 NADH-ubiquinone oxidoreductase compare
CCNA_00051 +3.1 20.7 magnesium and cobalt efflux protein CorC compare
CCNA_01445 +3.1 12.3 hypothetical protein compare
CCNA_00050 +3.0 19.9 apolipoprotein N-acyltransferase compare
CCNA_01218 +2.9 10.0 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_03609 +2.9 11.4 outer membrane protein compare
CCNA_01103 +2.9 11.1 ADP-heptose--LPS heptosyltransferase compare
CCNA_03909 +2.8 7.8 hypothetical protein compare
CCNA_02910 +2.8 22.7 TonB-dependent receptor compare
CCNA_03864 +2.8 16.1 hypothetical protein compare
CCNA_02315 +2.8 16.3 Cro/CI-family transcriptional regulator compare
CCNA_01217 +2.8 16.9 phosphatidylglycerophosphate synthase compare
CCNA_01763 +2.5 16.0 multifunctional aminopeptidase compare
CCNA_02042 +2.4 16.5 trigger factor chaperone compare
CCNA_00684 +2.3 10.5 anti-sigma factor, ChrR-family compare
CCNA_00290 +2.3 20.0 autotransporter protein compare
CCNA_01011 +2.3 9.2 imidazolonepropionase compare
CCNA_03163 +2.2 14.4 peptidyl-prolyl cis-trans isomerase compare
CCNA_03805 +2.2 13.6 PadR-family transcriptional regulator compare
CCNA_01373 +2.2 11.6 hypothetical protein compare
CCNA_01220 +2.1 7.7 7-keto-8-aminopelargonate synthetase compare
CCNA_01059 +2.1 13.8 S-layer protein rsaA compare
CCNA_02316 +2.0 7.0 hypothetical protein compare
CCNA_03202 +2.0 15.9 lipid A 3-O-deacylase PagL compare
CCNA_03353 +2.0 13.0 metallophosphatase domain protein compare
CCNA_02663 +2.0 4.0 DnaK suppressor protein DksA compare
CCNA_01643 +2.0 12.0 arginine-tRNA-protein transferase compare
CCNA_02387 +2.0 15.3 glutathione reductase compare
CCNA_03132 +1.9 4.9 transcriptional regulator, antitoxin protein higA compare
CCNA_02237 +1.9 15.5 Xaa-pro dipeptidyl-peptidase compare
CCNA_00525 +1.9 1.6 prolipoprotein diacylglyceryl transferase compare
CCNA_03112 +1.9 14.9 magnesium and cobalt efflux protein corB conserved
CCNA_02553 +1.9 15.1 ATP-dependent clp protease ATP-binding subunit ClpA compare
CCNA_01064 +1.9 11.6 perosamine synthetase compare
CCNA_01553 +1.8 9.8 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_00781 +1.8 14.8 two-component receiver protein CpdR compare
CCNA_01578 +1.8 11.7 beta-lactamase repressor compare
CCNA_02075 +1.8 3.1 peptidoglycan binding endopeptidase DipM compare
CCNA_03129 +1.8 14.3 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02339 +1.8 15.7 methyltransferase compare
CCNA_02552 +1.8 6.2 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_01219 +1.8 3.8 putative cytosolic protein compare
CCNA_00778 +1.7 12.1 GTP-binding protein TypA/BipA compare
CCNA_02933 +1.7 14.6 aminopeptidase compare
CCNA_02127 +1.7 14.4 oxacillin resistance-associated protein fmtC compare
CCNA_00924 +1.7 6.6 MarR/EmrR family transcriptional regulator compare
CCNA_01210 +1.7 4.0 nucleotidyltransferase family protein compare
CCNA_01816 +1.7 7.2 nitrogen regulation protein ntrY compare
CCNA_03858 +1.7 9.5 protein translocase subunit secB compare
CCNA_01199 +1.7 9.4 glucose-1-phosphate thymidylyltransferase compare
CCNA_03755 +1.7 5.2 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_01955 +1.6 8.6 zinc metalloprotease compare
CCNA_01181 +1.6 9.7 hypothetical protein compare
CCNA_00375 +1.6 7.3 hypothetical protein compare
CCNA_01497 +1.6 3.8 ADP-L-glycero-D-manno-heptose-6-epimerase compare
CCNA_01817 +1.6 9.7 nitrogen assimilation regulatory protein ntrX compare
CCNA_01993 +1.5 6.7 membrane endopeptidase MmpA compare
CCNA_01061 +1.5 5.7 type I secretion adaptor protein RsaE compare
CCNA_00954 +1.5 9.5 AAA-family response regulator flbD compare
CCNA_03404 +1.5 8.8 regulator of CtrA degradation RcdA compare
CCNA_03744 +1.4 10.0 dTDP-glucose 4,6-dehydratase compare
CCNA_02567 +1.4 10.5 sensory transduction histidine kinase pleC compare
CCNA_00497 +1.4 9.6 putative rhamnosyl transferase compare
CCNA_03705 +1.4 3.8 hypothetical protein compare
CCNA_00292 +1.4 4.0 phosphate transport system permease protein pstC compare
CCNA_03161 +1.4 7.7 transcriptional regulator xylR compare
CCNA_00029 +1.4 6.0 lysine exporter protein compare
CCNA_01918 +1.4 9.7 cyclic di-GMP effector protein PopA compare
CCNA_00210 +1.4 12.1 TonB-dependent receptor compare
CCNA_01815 +1.4 9.0 nitrogen assimilation regulatory protein NtrC compare
CCNA_00354 +1.4 6.8 NlpC/P60 CHAP domain amidase protein compare
CCNA_03702 +1.3 2.0 SSU ribosomal protein S1P compare
CCNA_03064 +1.3 9.4 PadR-family transcriptional regulator compare
CCNA_01060 +1.3 6.3 type I protein secretion ATP-binding protein RsaD compare
CCNA_01751 +1.3 6.0 aminodeoxychorismate lyase compare
CCNA_00152 +1.3 7.4 winged helix-turn-helix transcription repressor HrcA compare
CCNA_00757 +1.3 8.6 lysyl-tRNA synthetase compare
CCNA_02447 +1.3 9.2 PspA/IM30 family regulatory protein compare
CCNA_01995 +1.3 2.7 phosphatidate cytidylyltransferase compare
CCNA_01361 +1.3 2.9 PepSY superfamily protein compare
CCNA_00369 +1.3 10.5 magnesium and cobalt efflux protein corC-like protein compare
CCNA_01712 +1.2 9.8 CopY/TcrY family transcriptional repressor compare
CCNA_01756 +1.2 2.0 hypothetical protein compare
CCNA_03809 +1.2 5.8 organic solvent resistance transport system permease compare
CCNA_02289 +1.2 8.4 MarR/EmrR family transcriptional regulator compare
CCNA_00517 +1.2 2.8 peptidyl-tRNA hydrolase compare
CCNA_02448 +1.2 8.8 hypothetical protein compare
CCNA_01916 +1.2 6.8 ribonuclease BN compare
CCNA_00999 +1.1 4.7 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_03273 +1.1 6.3 hypothetical protein compare
CCNA_03983 +1.1 1.1 HicA-related toxin-antitoxin protein compare
CCNA_02219 +1.1 6.1 hypothetical protein compare
CCNA_03590 +1.1 3.3 anti-sigma factor NepR compare
CCNA_02535 +1.1 1.5 DNA topoisomerase I compare
CCNA_00512 +1.1 5.3 GTP-binding protein, probable translation factor compare
CCNA_01065 +1.1 7.2 glycosyltransferase compare
CCNA_03808 +1.0 7.1 organic solvent resistance transport system Ttg2C protein compare
CCNA_01270 +1.0 2.9 hypothetical protein compare
CCNA_03807 +1.0 6.5 organic solvent resistance transport system Ttg2D protein compare
CCNA_00230 +1.0 6.7 ribosomal large subunit pseudouridine synthase B compare
CCNA_00280 +1.0 7.0 tRNA pseudouridine synthase A compare
CCNA_03923 +1.0 3.4 hypothetical protein compare
CCNA_03748 +1.0 5.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
CCNA_01954 +1.0 2.9 ribonuclease E compare
CCNA_02957 +1.0 5.4 ArsR-family transcriptional regulator compare
CCNA_00742 +1.0 5.7 HAD superfamily sugar phosphatase compare
CCNA_00505 +1.0 7.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01556 +1.0 1.0 LacI-family transcriptional regulator compare
CCNA_03810 +0.9 5.8 organic solvent resistance transport system ATP-binding protein compare
CCNA_03970 +0.9 1.2 hypothetical protein compare
CCNA_03949 +0.9 5.0 hypothetical protein compare
CCNA_02620 +0.9 3.2 hypothetical protein compare
CCNA_03806 +0.9 7.0 outer membrane lipoprotein compare
CCNA_01226 +0.9 3.1 hypothetical protein compare
CCNA_01959 +0.9 2.1 3-dehydroquinate dehydratase compare
CCNA_03741 +0.9 5.1 DNA-cytosine methyltransferase compare
CCNA_01814 +0.9 6.3 nitrogen regulation protein ntrB compare
CCNA_01066 +0.9 6.7 glycosyltransferase compare
CCNA_03043 +0.9 4.5 type IV pilin protein pilA compare
CCNA_02328 +0.9 1.5 cell cycle regulatory protein GcrA compare
CCNA_02103 +0.9 6.9 hypothetical protein compare
CCNA_02416 +0.9 5.7 DNA-binding protein HU compare
CCNA_03849 +0.9 3.7 fructokinase compare
CCNA_03256 +0.9 1.4 chorismate synthase compare
CCNA_03316 +0.8 6.5 UDP-N-acetylglucosamine 4,6-dehydratase/UDP-D-quinovosamine 4-dehydrogenase compare
CCNA_03095 +0.8 6.3 small-conductance mechanosensitive channel compare
CCNA_02980 +0.8 5.8 tryptophan 2,3-dioxygenase compare
CCNA_03287 +0.8 5.8 PadR-family transcriptional regulator compare
CCNA_03104 +0.8 4.6 3-dehydroquinate synthase compare
CCNA_03878 +0.8 1.0 ferrochelatase compare
CCNA_00190 +0.8 0.6 acyl-CoA hydrolase compare
CCNA_00395 +0.8 6.4 feruloyl-CoA synthetase compare
CCNA_00950 +0.8 6.1 flagellar M-ring protein FliF compare
CCNA_03103 +0.8 4.2 shikimate kinase (EC 2.7.1.71) (from data) compare
CCNA_02714 +0.8 6.6 ABC transporter ATP-binding protein uup compare
CCNA_01086 +0.8 5.7 GTP-binding protein lepA compare
CCNA_00699 +0.8 2.5 LSU ribosomal protein L28P compare
CCNA_00397 +0.8 5.9 acetolactate synthase compare
CCNA_00035 +0.8 4.3 tRNA pseudouridine synthase B compare
CCNA_01622 +0.8 2.8 Rsh ppGpp hydrolase-synthetase compare
CCNA_01245 +0.8 5.1 23S rRNA methyltransferase compare
CCNA_01430 +0.8 4.3 hypothetical protein compare
CCNA_02490 +0.8 1.8 3-ketoacyl-CoA thiolase compare
CCNA_03689 +0.8 5.8 alanine dehydrogenase compare
CCNA_02241 +0.8 2.7 endoribonuclease L-PSP compare
CCNA_00350 +0.8 1.0 hypothetical protein compare
CCNA_01920 +0.8 6.1 transcription-repair coupling factor Mfd compare
CCNA_03519 +0.8 4.1 PadR-family transcriptional regulator compare
CCNA_03611 +0.8 5.2 glutathione-regulated potassium-efflux system protein kefC compare
CCNA_00952 +0.8 5.1 flagellar assembly protein FlbE/FliH compare
CCNA_00668 +0.7 4.5 capsular polysaccharide biosynthesis protein compare
CCNA_00038 +0.7 4.7 hypothetical protein compare
CCNA_01584 +0.7 6.3 multimodular transpeptidase-transglycosylase PBP 1A compare
CCNA_01214 +0.7 1.3 YjgP/YjgQ family membrane permease compare
CCNA_03215 +0.7 5.7 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_00003 +0.7 4.6 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
CCNA_02737 +0.7 1.8 queuosine biosynthesis protein QueF compare
CCNA_01898 +0.7 3.3 Mg-dependent Dnase TatD compare
CCNA_03633 +0.7 0.5 GIY-YIG domain protein compare
CCNA_03880 +0.7 2.7 ligand-binding SRPBCC domain protein compare
CCNA_01249 +0.7 3.4 ABC-transporter substrate binding protein compare
CCNA_02845 +0.7 3.6 two-component response regulator compare
CCNA_02295 +0.7 2.5 hypothetical protein compare
CCNA_03499 +0.7 2.3 hypothetical protein compare
CCNA_03108 +0.7 6.0 TonB-dependent outer membrane receptor compare
CCNA_02200 +0.7 2.5 cytochrome c-family protein compare
CCNA_00864 +0.7 3.8 D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data) compare
CCNA_03136 +0.7 2.6 flagellar export protein FliJ compare
CCNA_03135 +0.7 4.4 flagellum-specific ATP synthase fliL compare
CCNA_02140 +0.7 3.3 flagellar motor switch protein fliM compare
CCNA_00752 +0.7 4.8 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_R0075 +0.7 1.6 tRNA-Met compare
CCNA_01581 +0.7 1.5 hypothetical protein compare
CCNA_02846 +0.7 4.7 DegP/HtrA-family serine protease compare
CCNA_02836 +0.7 4.2 hypothetical protein compare
CCNA_01864 +0.7 1.4 TetR-family transcriptional regulator compare
CCNA_02138 +0.7 3.8 hypothetical protein compare
CCNA_01738 +0.7 5.0 TonB-dependent outer membrane receptor compare
CCNA_00161 +0.6 3.6 hypothetical protein compare
CCNA_00951 +0.6 4.4 flagellar motor switch protein FliG compare
CCNA_00884 +0.6 1.8 VapC-like PIN domain ribonuclease toxin compare
CCNA_00753 +0.6 4.8 lysine 2,3-aminomutase compare
CCNA_02796 +0.6 1.5 hypothetical protein compare
CCNA_02225 +0.6 3.1 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_03062 +0.6 5.0 cell wall hydrolase family protein compare
CCNA_01001 +0.6 3.9 ribokinase compare
CCNA_02063 +0.6 1.9 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_00250 +0.6 4.3 poly(3-hydroxyalkanoate) depolymerase compare
CCNA_01690 +0.6 2.2 MAPEG family membrane protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Cobalt chloride hexahydrate in Caulobacter crescentus NA1000

For stress Cobalt chloride hexahydrate across organisms