Experiment set3IT018 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 9; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -4.7 -3.2 NUDIX domain-containing protein compare
ABZR87_RS08695 -4.1 -9.5 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS08630 -3.9 -2.7 dihydroorotase compare
ABZR87_RS12965 -3.6 -3.0 tail protein X compare
ABZR87_RS11330 -3.5 -3.1 transcriptional repressor LexA compare
ABZR87_RS14115 -3.4 -3.5 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS23095 -3.4 -1.5 MarR family transcriptional regulator compare
ABZR87_RS02655 -3.4 -7.2 anti-sigma factor compare
ABZR87_RS11760 -3.3 -1.5 membrane protein compare
ABZR87_RS22920 -3.2 -2.2 phosphogluconate dehydratase compare
ABZR87_RS13290 -3.2 -3.6 3-ketoacyl-ACP reductase compare
ABZR87_RS14505 -3.0 -4.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS02640 -3.0 -9.0 diaminopimelate decarboxylase compare
ABZR87_RS14500 -2.9 -8.4 tryptophan synthase subunit beta compare
ABZR87_RS05100 -2.8 -2.0 RNA polymerase-binding protein DksA compare
ABZR87_RS21950 -2.8 -8.5 hypothetical protein compare
ABZR87_RS22690 -2.7 -2.6 XRE family transcriptional regulator compare
ABZR87_RS12665 -2.7 -1.7 ABC transporter ATP-binding protein compare
ABZR87_RS02565 -2.7 -3.7 glutamate synthase subunit beta compare
ABZR87_RS16080 -2.7 -2.4 P-II family nitrogen regulator compare
ABZR87_RS01450 -2.5 -2.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS02140 -2.5 -11.3 anthranilate synthase component I compare
ABZR87_RS02160 -2.5 -3.6 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS21285 -2.4 -2.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14535 -2.4 -2.9 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS10550 -2.3 -1.6 outer membrane protein assembly factor BamC compare
ABZR87_RS05305 -2.3 -6.7 TetR family transcriptional regulator compare
ABZR87_RS06350 -2.3 -7.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS14540 -2.3 -4.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS08205 -2.3 -1.4 hypothetical protein compare
ABZR87_RS22910 -2.3 -2.2 6-phosphogluconolactonase compare
ABZR87_RS20875 -2.3 -4.6 LysR family transcriptional regulator compare
ABZR87_RS10175 -2.3 -3.5 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS01810 -2.3 -2.7 glutamate 5-kinase compare
ABZR87_RS08990 -2.2 -3.4 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS03850 -2.2 -3.5 ureidoglycolate lyase compare
ABZR87_RS09445 -2.2 -5.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS14190 -2.2 -10.0 DUF2589 domain-containing protein compare
ABZR87_RS02590 -2.2 -5.6 3-dehydroquinate synthase compare
ABZR87_RS08970 -2.2 -2.6 protein TolQ compare
ABZR87_RS18170 -2.2 -1.4 hypothetical protein compare
ABZR87_RS20160 -2.2 -2.6 OmpA family protein compare
ABZR87_RS01035 -2.2 -3.6 histidine utilization repressor compare
ABZR87_RS07360 -2.2 -6.2 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS07380 -2.2 -7.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02595 -2.1 -7.3 shikimate kinase compare
ABZR87_RS17595 -2.1 -1.9 hypothetical protein compare
ABZR87_RS13790 -2.1 -5.5 chorismate synthase compare
ABZR87_RS07510 -2.0 -2.0 LysR family transcriptional regulator compare
ABZR87_RS13285 -2.0 -8.9 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS20880 -2.0 -5.6 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02375 -2.0 -4.8 cytochrome c1 compare
ABZR87_RS14490 -2.0 -5.1 tryptophan synthase subunit alpha compare
ABZR87_RS22970 -2.0 -6.4 cystathionine gamma-synthase family protein compare
ABZR87_RS05200 -2.0 -9.0 homoserine O-acetyltransferase compare
ABZR87_RS18325 -2.0 -1.6 ferredoxin family protein compare
ABZR87_RS08795 -1.9 -1.3 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS18695 -1.9 -5.7 sugar-binding transcriptional regulator compare
ABZR87_RS07055 -1.9 -7.2 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS21345 -1.9 -3.1 tRNA-OTHER compare
ABZR87_RS01085 -1.9 -3.4 rhombosortase compare
ABZR87_RS08985 -1.9 -4.7 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS15715 -1.9 -5.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS08980 -1.9 -2.2 cell envelope integrity protein TolA compare
ABZR87_RS21225 -1.9 -1.6 LysR family transcriptional regulator compare
ABZR87_RS23215 -1.8 -4.7 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS20785 -1.8 -1.1 DUF2783 domain-containing protein compare
ABZR87_RS17310 -1.8 -3.3 PadR family transcriptional regulator compare
ABZR87_RS03780 -1.8 -1.6 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS00435 -1.7 -1.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS01280 -1.7 -3.3 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS02440 -1.7 -3.3 twin-arginine translocase subunit TatC compare
ABZR87_RS08230 -1.7 -2.4 hypothetical protein compare
ABZR87_RS06715 -1.7 -3.0 PTS sugar transporter subunit IIA compare
ABZR87_RS10980 -1.7 -1.0 tRNA-Leu compare
ABZR87_RS16055 -1.7 -3.9 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS20495 -1.7 -1.3 hypothetical protein compare
ABZR87_RS17145 -1.7 -8.4 AMP nucleosidase compare
ABZR87_RS02570 -1.7 -10.5 glutamate synthase-related protein compare
ABZR87_RS09465 -1.7 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02155 -1.7 -3.7 anthranilate phosphoribosyltransferase compare
ABZR87_RS12970 -1.7 -3.0 putative holin compare
ABZR87_RS11150 -1.6 -4.0 cytochrome-c oxidase, cbb3-type subunit II compare
ABZR87_RS12955 -1.6 -2.7 terminase endonuclease subunit compare
ABZR87_RS16545 -1.6 -2.2 enoyl-CoA hydratase family protein compare
ABZR87_RS22520 -1.6 -1.9 ABATE domain-containing protein compare
ABZR87_RS23445 -1.6 -1.4 malonate decarboxylase subunit delta compare
ABZR87_RS04270 -1.6 -3.0 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS06825 -1.6 -1.4 twin transmembrane helix small protein compare
ABZR87_RS09975 -1.5 -3.2 Fe-S cluster assembly transcriptional regulator IscR compare
ABZR87_RS12345 -1.5 -1.0 dethiobiotin synthase compare
ABZR87_RS18165 -1.5 -1.0 hypothetical protein compare
ABZR87_RS10170 -1.5 -2.7 RseA family anti-sigma factor compare
ABZR87_RS14890 -1.5 -0.9 preprotein translocase subunit SecG compare
ABZR87_RS14965 -1.5 -1.8 DUF3619 family protein compare
ABZR87_RS02515 -1.5 -1.4 BolA family protein compare
ABZR87_RS20075 -1.5 -1.2 DUF2892 domain-containing protein compare
ABZR87_RS06030 -1.5 -0.9 AraC family transcriptional regulator compare
ABZR87_RS17440 -1.5 -0.8 (2Fe-2S)-binding protein compare
ABZR87_RS17115 -1.4 -2.0 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS21955 -1.4 -3.9 hypothetical protein compare
ABZR87_RS00410 -1.4 -2.9 DUF4180 domain-containing protein compare
ABZR87_RS11180 -1.4 -2.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
ABZR87_RS10085 -1.4 -1.0 Rne/Rng family ribonuclease compare
ABZR87_RS02380 -1.4 -5.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS09515 -1.4 -1.0 cysteine synthase CysM compare
ABZR87_RS11990 -1.4 -1.7 hypothetical protein compare
ABZR87_RS02385 -1.4 -2.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS09450 -1.4 -4.3 prephenate dehydratase compare
ABZR87_RS13050 -1.4 -0.9 GpE family phage tail protein compare
ABZR87_RS07610 -1.4 -2.8 histidine phosphatase family protein compare
ABZR87_RS01110 -1.4 -4.1 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS09955 -1.4 -3.8 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS08950 -1.3 -2.2 transcriptional regulator NrdR compare
ABZR87_RS14415 -1.3 -0.7 hemin uptake protein HemP compare
ABZR87_RS05060 -1.3 -2.0 DUF484 family protein compare
ABZR87_RS12960 -1.3 -1.0 head completion/stabilization protein compare
ABZR87_RS14970 -1.3 -2.6 DUF3106 domain-containing protein compare
ABZR87_RS10420 -1.3 -2.2 TatD family hydrolase compare
ABZR87_RS01685 -1.3 -2.6 histone H1-like DNA-binding protein compare
ABZR87_RS18400 -1.3 -0.9 hypothetical protein compare
ABZR87_RS09895 -1.3 -0.9 DUF1841 family protein compare
ABZR87_RS18145 -1.3 -2.7 lytic transglycosylase domain-containing protein compare
ABZR87_RS04880 -1.3 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS03665 -1.3 -2.6 MarR family transcriptional regulator compare
ABZR87_RS19340 -1.3 -1.0 LysR family transcriptional regulator compare
ABZR87_RS12950 -1.3 -3.8 phage major capsid protein, P2 family compare
ABZR87_RS13250 -1.3 -1.7 phosphoserine phosphatase SerB compare
ABZR87_RS14330 -1.2 -0.8 hypothetical protein compare
ABZR87_RS16170 -1.2 -0.9 argininosuccinate lyase compare
ABZR87_RS06705 -1.2 -6.1 glutamate--cysteine ligase compare
ABZR87_RS00205 -1.2 -2.0 DUF934 domain-containing protein compare
ABZR87_RS04975 -1.2 -1.2 peptide deformylase compare
ABZR87_RS06355 -1.2 -4.3 SPOR domain-containing protein compare
ABZR87_RS20690 -1.2 -1.1 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS11735 -1.2 -0.9 chitin-binding domain-containing protein compare
ABZR87_RS23470 -1.2 -1.5 malonate decarboxylase holo-ACP synthase compare
ABZR87_RS22035 -1.2 -1.7 hypothetical protein compare
ABZR87_RS18335 -1.2 -1.5 GntR family transcriptional regulator compare
ABZR87_RS19675 -1.2 -0.9 cold-shock protein compare
ABZR87_RS09625 -1.2 -5.5 CobD/CbiB family protein compare
ABZR87_RS00340 -1.2 -1.1 50S ribosomal protein L33 compare
ABZR87_RS11730 -1.2 -1.3 M55 family metallopeptidase compare
ABZR87_RS20450 -1.2 -1.0 HAD family phosphatase compare
ABZR87_RS01275 -1.2 -2.6 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS22325 -1.2 -1.3 H-NS histone family protein compare
ABZR87_RS11470 -1.2 -3.0 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS12785 -1.2 -1.1 endopeptidase La compare
ABZR87_RS06845 -1.2 -4.5 heme o synthase compare
ABZR87_RS21940 -1.2 -0.7 hypothetical protein compare
ABZR87_RS11145 -1.2 -5.9 cytochrome-c oxidase, cbb3-type subunit I compare
ABZR87_RS11980 -1.2 -0.7 cold-shock protein compare
ABZR87_RS01765 -1.2 -2.3 cytochrome c biogenesis protein CcsA compare
ABZR87_RS07880 -1.1 -1.3 hypothetical protein compare
ABZR87_RS08635 -1.1 -3.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS11815 -1.1 -3.9 [protein-PII] uridylyltransferase compare
ABZR87_RS12975 -1.1 -1.9 phage holin family protein compare
ABZR87_RS20245 -1.1 -2.4 hypothetical protein compare
ABZR87_RS19750 -1.1 -2.0 DNA-binding domain-containing protein compare
ABZR87_RS10395 -1.1 -3.3 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS07355 -1.1 -2.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS19980 -1.1 -1.6 DUF1488 domain-containing protein compare
ABZR87_RS08640 -1.1 -2.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS17730 -1.1 -3.1 GntR family transcriptional regulator compare
ABZR87_RS08155 -1.1 -2.8 methyl-accepting chemotaxis protein compare
ABZR87_RS04865 -1.1 -1.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS07290 -1.1 -1.7 DUF6691 family protein compare
ABZR87_RS05145 -1.1 -1.0 copper chaperone PCu(A)C compare
ABZR87_RS04265 -1.1 -4.2 phenylalanine 4-monooxygenase compare
ABZR87_RS15605 -1.1 -1.0 hypothetical protein compare
ABZR87_RS15290 -1.1 -1.7 hypothetical protein compare
ABZR87_RS08610 -1.1 -2.7 YqgE/AlgH family protein compare
ABZR87_RS01285 -1.1 -0.7 preprotein translocase subunit YajC compare
ABZR87_RS23530 -1.1 -2.2 hypothetical protein compare
ABZR87_RS03410 -1.1 -3.7 type II secretion system major pseudopilin GspG compare
ABZR87_RS14380 -1.1 -3.1 glutamate racemase compare
ABZR87_RS00325 -1.1 -1.5 peptidylprolyl isomerase compare
ABZR87_RS14605 -1.1 -5.3 aconitate hydratase AcnA compare
ABZR87_RS09820 -1.1 -1.4 RidA family protein compare
ABZR87_RS11160 -1.1 -2.5 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR87_RS22390 -1.1 -3.0 alpha/beta fold hydrolase compare
ABZR87_RS12945 -1.1 -1.4 GPO family capsid scaffolding protein compare
ABZR87_RS20250 -1.1 -1.1 type VI secretion system lipoprotein TssJ compare
ABZR87_RS14675 -1.0 -0.7 glyoxalase compare
ABZR87_RS21540 -1.0 -3.3 aldehyde dehydrogenase family protein compare
ABZR87_RS06285 -1.0 -3.2 YchJ family protein compare
ABZR87_RS06695 -1.0 -2.9 P-II family nitrogen regulator compare
ABZR87_RS12385 -1.0 -1.0 AraC family transcriptional regulator compare
ABZR87_RS23180 -1.0 -0.6 ABC transporter ATP-binding protein compare
ABZR87_RS11810 -1.0 -2.4 pseudouridine synthase compare
ABZR87_RS19435 -1.0 -1.8 trehalose-phosphatase compare
ABZR87_RS03865 -1.0 -4.5 GntR family transcriptional regulator compare
ABZR87_RS08400 -1.0 -1.3 glycine zipper 2TM domain-containing protein compare
ABZR87_RS22405 -1.0 -0.9 hypothetical protein compare
ABZR87_RS00230 -1.0 -1.4 NAD(P)-dependent oxidoreductase compare
ABZR87_RS07215 -1.0 -1.4 hotdog family protein compare
ABZR87_RS06920 -1.0 -1.8 maleylacetoacetate isomerase compare
ABZR87_RS11755 -1.0 -1.2 arsenate reductase compare
ABZR87_RS18140 -1.0 -1.1 type III secretion system export apparatus subunit SctR compare
ABZR87_RS20650 -1.0 -1.1 aspartate dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment