Experiment set3IT017 for Rhodospirillum rubrum S1H

Compare to:

Valeric acid 25 mM; anaerobic

200 most important genes:

  gene name fitness t score description  
Rru_A0619 -7.4 -2.5 Magnesium protoporphyrin O-methyltransferase (NCBI) compare
Rru_A3594 -7.3 -2.7 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A0670 -7.0 -2.8 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A0485 -5.8 -9.5 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A2974 -5.4 -12.1 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A0370 -5.0 -2.2 Protein of unknown function DUF58 (NCBI) compare
Rru_A0574 -5.0 -2.2 Carboxylyase-related protein (NCBI) compare
Rru_A1286 -5.0 -1.0 hypothetical protein (NCBI) compare
Rru_A0486 -4.8 -11.3 von Willebrand factor, type A (NCBI) compare
Rru_A3266 -4.8 -13.1 Homoserine O-acetyltransferase (NCBI) compare
Rru_A2772 -4.6 -2.5 ATP phosphoribosyltransferase (NCBI) compare
Rru_A2981 -4.4 -7.0 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A2886 -4.3 -20.8 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A0621 -4.2 -14.3 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A0296 -4.2 -2.2 hypothetical protein (NCBI) compare
Rru_A1894 -4.2 -7.1 heavy metal translocating P-type ATPase (NCBI) compare
Rru_A2983 -4.2 -1.2 Polyprenyl synthetase (NCBI) compare
Rru_A1239 -4.1 -1.6 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A2370 -4.1 -2.3 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A3425 -4.1 -7.4 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A0624 -4.1 -9.0 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A2980 -4.0 -9.7 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A3428 -4.0 -13.3 Tryptophan synthase (NCBI) compare
Rru_A3751 -4.0 -10.3 Argininosuccinate synthase (NCBI) compare
Rru_A3548 -3.9 -9.5 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A2975 -3.9 -13.8 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A2979 -3.9 -5.9 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A1896 -3.9 -7.7 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A3558 -3.9 -2.1 Protein of unknown function UPF0005 (NCBI) compare
Rru_A0620 -3.8 -6.6 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A1837 -3.8 -4.7 Porphobilinogen synthase (NCBI) compare
Rru_A3162 -3.8 -11.8 Prephenate dehydratase (NCBI) compare
Rru_A0622 -3.8 -8.5 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A2978 -3.8 -7.9 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A2525 -3.7 -9.5 Peptidase U32 (NCBI) compare
Rru_A0627 -3.7 -7.6 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A1775 -3.6 -2.9 chromosome segregation and condensation protein ScpA (NCBI) compare
Rru_A1530 -3.6 -12.8 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A1895 -3.6 -2.1 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A3276 -3.6 -5.8 Ornithine carbamoyltransferase (NCBI) compare
Rru_A3277 -3.5 -4.7 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A3267 -3.5 -5.8 Methionine biosynthesis MetW (NCBI) compare
Rru_A0617 -3.5 -4.0 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A3227 -3.5 -7.3 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A0397 -3.4 -5.9 Argininosuccinate lyase (NCBI) compare
Rru_A2421 -3.4 -6.1 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A0493 -3.4 -9.9 Phytoene desaturase (NCBI) compare
Rru_A3214 -3.3 -11.0 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A1897 -3.3 -5.3 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A1786 -3.2 -16.1 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A1105 -3.2 -4.8 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A0469 -3.2 -11.9 Ketol-acid reductoisomerase (NCBI) compare
Rru_A1890 -3.2 -2.7 hypothetical protein (NCBI) compare
Rru_A0053 -3.1 -11.3 Carboxyl transferase (NCBI) compare
Rru_A3264 -3.1 -9.5 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A0274 -3.1 -6.2 Acetyl-CoA C-acetyltransferase (NCBI) compare
Rru_A1827 -3.1 -9.2 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A2524 -3.0 -9.2 Peptidase U32 (NCBI) compare
Rru_A0467 -3.0 -12.2 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A0052 -3.0 -12.4 Biotin carboxylase (NCBI) compare
Rru_A2936 -3.0 -11.1 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A1189 -2.9 -10.5 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A2512 -2.9 -7.5 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI) compare
Rru_A1928 -2.8 -10.9 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A3642 -2.8 -1.0 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A2403 -2.8 -12.7 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A2182 -2.8 -2.4 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2992 -2.8 -3.2 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A3547 -2.6 -4.6 hypothetical protein (NCBI) compare
Rru_A2181 -2.6 -11.0 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A3427 -2.6 -10.4 Tryptophan synthase, beta chain (NCBI) compare
Rru_A2982 -2.5 -4.2 O-methyltransferase, family 2 (NCBI) compare
Rru_A0468 -2.5 -3.1 Acetolactate synthase, small subunit (NCBI) compare
Rru_A2404 -2.5 -10.2 Phosphoribulokinase (NCBI) compare
Rru_A3341 -2.5 -2.5 Acetylglutamate kinase (NCBI) compare
Rru_A0625 -2.4 -3.3 hypothetical protein (NCBI) compare
Rru_A1191 -2.4 -8.7 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A3190 -2.4 -2.6 Aspartate carbamoyltransferase (NCBI) compare
Rru_A3359 -2.4 -6.9 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A0514 -2.4 -9.0 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A2400 -2.4 -9.8 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A2989 -2.4 -3.9 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A0683 -2.4 -0.6 3-deoxy-7-phosphoheptulonate synthase (NCBI) compare
Rru_A2885 -2.3 -7.0 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A2183 -2.3 -10.4 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A0394 -2.2 -3.4 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A0494 -2.2 -5.8 Squalene/phytoene synthase (NCBI) compare
Rru_A2987 -2.2 -2.9 hypothetical protein (NCBI) compare
Rru_A2029 -2.1 -1.0 Serine O-acetyltransferase (NCBI) compare
Rru_A0613 -2.1 -5.5 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A2167 -2.0 -6.7 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A1865 -2.0 -3.9 Dihydrodipicolinate synthase subfamily (NCBI) compare
Rru_A2549 -2.0 -7.9 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A0021 -2.0 -1.0 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A2510 -1.9 -2.0 hypothetical protein (NCBI) compare
Rru_A1675 -1.9 -9.3 Cytochrome c assembly protein (NCBI) compare
Rru_A0412 -1.9 -2.3 hypothetical protein (NCBI) compare
Rru_A0207 -1.9 -3.8 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A1190 -1.9 -0.9 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A2990 -1.9 -5.1 precorrin-2 C20-methyltransferase (NCBI) compare
Rru_A1620 -1.9 -1.1 hypothetical protein (NCBI) compare
Rru_B0049 -1.9 -1.7 dTDP-4-dehydrorhamnose reductase (NCBI) compare
Rru_A3382 -1.8 -4.6 Cobalamin biosynthesis protein CbiB (NCBI) compare
Rru_A2771 -1.7 -2.5 Histidinol dehydrogenase (NCBI) compare
Rru_A3766 -1.7 -3.8 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A0159 -1.7 -1.5 Exodeoxyribonuclease VII (NCBI) compare
Rru_A2507 -1.7 -8.5 Orotate phosphoribosyl transferase (NCBI) compare
Rru_A0291 -1.7 -1.1 hypothetical protein (NCBI) compare
Rru_A0454 -1.7 -2.6 Leucyl aminopeptidase (NCBI) compare
Rru_A0435 -1.7 -9.5 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A3380 -1.6 -1.5 hypothetical protein (NCBI) compare
Rru_A3165 -1.6 -3.4 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A2986 -1.6 -3.8 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A0404 -1.6 -11.9 Amidophosphoribosyl transferase (NCBI) compare
Rru_A0556 -1.6 -5.4 Formyltetrahydrofolate deformylase (NCBI) compare
Rru_A3191 -1.6 -5.8 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A3009 -1.5 -2.2 Aminotransferase class-III (NCBI) compare
Rru_A3748 -1.5 -2.8 hypothetical protein (NCBI) compare
Rru_A0560 -1.5 -5.1 Cytochrome bd ubiquinol oxidase, subunit I (NCBI) compare
Rru_A0618 -1.5 -4.8 PUCC protein (NCBI) compare
Rru_A1432 -1.5 -6.9 Nicotinate-nucleotide pyrophosphorylase (NCBI) compare
Rru_A3384 -1.4 -3.6 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A2497 -1.4 -3.6 Peptide chain release factor 3 (NCBI) compare
Rru_A3688 -1.4 -3.3 ABC transporter component (NCBI) compare
Rru_A2865 -1.4 -4.9 Peptidase M24 (NCBI) compare
Rru_A2004 -1.4 -1.6 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A3623 -1.4 -1.1 hypothetical protein (NCBI) compare
Rru_A3549 -1.4 -4.3 Cobyric acid synthase CobQ (NCBI) compare
Rru_A1937 -1.4 -1.1 hypothetical protein (NCBI) compare
Rru_A1021 -1.4 -1.4 Sigma 32 (RpoH) (NCBI) compare
Rru_A3755 -1.4 -5.0 Heat shock protein Hsp20 (NCBI) compare
Rru_A2038 -1.4 -4.4 Glutamate-ammonia-ligase adenylyltransferase (NCBI) compare
Rru_A1849 -1.3 -1.4 Recombination protein O, RecO (NCBI) compare
Rru_A3079 -1.3 -4.6 3-hydroxybutyryl-CoA dehydrogenase (NCBI) compare
Rru_A1648 -1.3 -1.2 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A1536 -1.2 -2.9 UvrD/REP helicase (NCBI) compare
Rru_A0006 -1.2 -1.5 Plasmid maintenance system antidote protein (NCBI) compare
Rru_A2846 -1.2 -1.7 hypothetical protein (NCBI) compare
Rru_A3424 -1.2 -2.6 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A3537 -1.2 -1.2 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A0155 -1.2 -2.1 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A3801 -1.2 -1.7 Enoyl-CoA hydratase/isomerase (NCBI) compare
Rru_A3693 -1.2 -1.6 Protein of unknown function UPF0011 (NCBI) compare
Rru_A3627 -1.2 -3.4 Cobyrinic acid a,c-diamide synthase (NCBI) compare
Rru_A0041 -1.2 -1.1 Cytochrome c, class II (NCBI) compare
Rru_A1309 -1.2 -4.7 acetoacetyl-CoA reductase (NCBI) compare
Rru_A1168 -1.2 -2.8 Hydrogenase expression/synthesis, HypA (NCBI) compare
Rru_B0050 -1.1 -2.3 dTDP-glucose 4,6-dehydratase (NCBI) compare
Rru_A3366 -1.1 -5.7 Cobaltochelatase, CobN subunit (NCBI) compare
Rru_A1529 -1.1 -4.7 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A0484 -1.1 -4.8 hypothetical protein (NCBI) compare
Rru_A0265 -1.1 -2.7 Electron-transferring-flavoproteindehydrogenase (NCBI) compare
Rru_A3338 -1.1 -1.1 Protein of unknown function DUF37 (NCBI) compare
Rru_A2480 -1.1 -1.8 Methylmalonyl-CoA mutase (NCBI) compare
Rru_A3240 -1.1 -1.6 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A2479 -1.1 -4.9 Methylmalonyl-CoA mutase-like (NCBI) compare
Rru_A3393 -1.1 -2.4 Penicillin-binding protein 1A (NCBI) compare
Rru_A3010 -1.1 -3.4 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0050 -1.1 -2.1 hypothetical protein (NCBI) compare
Rru_A0399 -1.0 -0.7 Phosphoesterase, PA-phosphatase related (NCBI) compare
Rru_A2478 -1.0 -3.5 ArgK protein (NCBI) compare
Rru_A1206 -1.0 -0.8 hypothetical protein (NCBI) compare
Rru_A0643 -1.0 -2.8 Protein of unknown function DUF152 (NCBI) compare
Rru_A3166 -1.0 -4.0 extracellular solute-binding protein, family 5 (NCBI) compare
Rru_A0616 -1.0 -4.8 photosynthetic complex assembly protein (NCBI) compare
Rru_A2062 -1.0 -2.0 hypothetical protein (NCBI) compare
Rru_A3019 -1.0 -1.2 hypothetical protein (NCBI) compare
Rru_A2016 -1.0 -1.3 hypothetical protein (NCBI) compare
Rru_A1074 -1.0 -1.7 MotA/TolQ/ExbB proton channel family protein (NCBI) compare
Rru_A2115 -1.0 -3.5 Phosphoglucomutase/phosphomannomutase (NCBI) compare
Rru_A0671 -1.0 -2.3 cobalamin synthesis CobW protein (NCBI) compare
Rru_A3677 -1.0 -2.3 Tripartite ATP-independent periplasmic transporter, DctQ component (NCBI) compare
Rru_A0596 -1.0 -1.6 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI) compare
Rru_A3550 -1.0 -2.9 Cobyric acid synthase CobQ (NCBI) compare
Rru_A0686 -0.9 -1.0 Transcriptional Regulator, LysR family (NCBI) compare
Rru_B0028 -0.9 -0.9 ABC transporter related (NCBI) compare
Rru_A0654 -0.9 -2.5 Multiple antibiotic resistance (MarC)-related proteins (NCBI) compare
Rru_A1687 -0.9 -1.9 Inositol monophosphatase (NCBI) compare
Rru_A2264 -0.9 -1.9 ferredoxin (NCBI) compare
Rru_A3367 -0.9 -2.3 Cob(I)alamin adenosyltransferase (NCBI) compare
Rru_A1209 -0.9 -2.0 Chromate transporter (NCBI) compare
Rru_A1393 -0.9 -1.8 Nitrogenase (NCBI) compare
Rru_A1677 -0.9 -3.0 Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) compare
Rru_A1527 -0.9 -4.0 ABC transporter component (NCBI) compare
Rru_A2988 -0.9 -1.7 Precorrin-6X reductase (NCBI) compare
Rru_A3397 -0.9 -1.3 hypothetical protein (NCBI) compare
Rru_A0164 -0.9 -4.9 Sulfate transporter/antisigma-factor antagonist (NCBI) compare
Rru_A0232 -0.9 -2.3 hypothetical protein (NCBI) compare
Rru_A1417 -0.9 -2.5 thioredoxin-disulfide reductase (NCBI) compare
Rru_A0740 -0.9 -2.5 Protein of unknown function DUF1178 (NCBI) compare
Rru_A2200 -0.9 -0.9 DNA polymerase III chi subunit, HolC (NCBI) compare
Rru_A3202 -0.9 -2.4 DNA topoisomerase (NCBI) compare
Rru_A1047 -0.9 -2.8 6-phosphofructokinase (NCBI) compare
Rru_A2110 -0.8 -3.3 ATP-dependent Clp protease adaptor protein ClpS (NCBI) compare
Rru_A3603 -0.8 -1.7 Protein of unknown function DUF162 (NCBI) compare
Rru_A1571 -0.8 -1.9 metallo-beta-lactamase (NCBI) compare
Rru_A0872 -0.8 -1.0 hypothetical protein (NCBI) compare
Rru_A1804 -0.8 -2.6 N-acetyltransferase (NCBI) compare
Rru_A0148 -0.8 -1.3 GTP-binding protein TypA (NCBI) compare
Rru_A1678 -0.8 -1.9 Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in carbon source experiments

For carbon source Valeric acid across organisms