Experiment set3IT017 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS06120 -4.7 -2.8 UPF0147 family protein compare
MMP_RS03475 -4.7 -0.9 hypothetical protein compare
MMP_RS06925 -4.6 -3.9 ribonuclease VapC4 compare
MMP_RS01955 -4.5 -3.2 hypothetical protein compare
MMP_RS08635 -4.2 -2.7 UbiA family prenyltransferase compare
MMP_RS01910 -4.2 -12.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS01915 -4.2 -15.3 DUF354 domain-containing protein compare
MMP_RS06730 -4.1 -2.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS00300 -4.0 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07845 -4.0 -3.9 LL-diaminopimelate aminotransferase compare
MMP_RS01920 -3.9 -11.5 glycosyltransferase family 2 protein compare
MMP_RS00520 -3.9 -2.4 RNA polymerase Rpb4 family protein compare
MMP_RS08790 -3.9 -2.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS07755 -3.8 -1.7 DUF555 domain-containing protein compare
MMP_RS02345 -3.7 -4.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04720 -3.6 -3.6 DedA family protein compare
MMP_RS01020 -3.6 -1.3 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01905 -3.6 -15.6 glycosyltransferase compare
MMP_RS08820 -3.6 -7.8 hypothetical protein compare
MMP_RS07730 -3.5 -2.8 pyruvate synthase subunit beta compare
MMP_RS03315 -3.5 -1.7 ferrous iron transport protein A compare
MMP_RS07555 -3.5 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS07005 -3.5 -0.9 4Fe-4S binding protein compare
MMP_RS01885 -3.5 -10.3 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01900 -3.4 -18.0 hypothetical protein compare
MMP_RS00895 -3.4 -5.7 hypothetical protein compare
MMP_RS08715 -3.4 -2.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01925 -3.4 -9.8 DUF1616 domain-containing protein compare
MMP_RS07390 -3.3 -3.7 cell division protein FtsZ compare
MMP_RS01940 -3.3 -5.5 MoxR family ATPase compare
MMP_RS01880 -3.3 -5.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS02900 -3.3 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05640 -3.3 -7.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08435 -3.2 -3.3 Era-like GTP-binding protein compare
MMP_RS06475 -3.2 -5.8 FAD-dependent oxidoreductase compare
MMP_RS08650 -3.2 -4.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03700 -3.2 -11.3 sodium:proton antiporter compare
MMP_RS01755 -3.2 -1.8 DUF2097 domain-containing protein compare
MMP_RS06975 -3.2 -2.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS07600 -3.2 -3.4 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02240 -3.2 -4.6 methanogenesis marker 7 protein compare
MMP_RS08720 -3.1 -1.8 4Fe-4S binding protein compare
MMP_RS02195 -3.1 -5.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS02010 -3.1 -11.8 PHP domain-containing protein compare
MMP_RS00110 -3.1 -4.2 hypothetical protein compare
MMP_RS07750 -3.1 -7.1 DUF357 domain-containing protein compare
MMP_RS06895 -3.0 -2.3 selenocysteine-specific translation elongation factor compare
MMP_RS01005 -2.9 -1.9 riboflavin synthase compare
MMP_RS05930 -2.9 -3.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS05815 -2.9 -5.5 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06670 -2.9 -4.2 glucose-6-phosphate isomerase compare
MMP_RS01895 -2.8 -9.0 flippase compare
MMP_RS09020 -2.8 -2.5 hypothetical protein compare
MMP_RS04780 -2.8 -3.7 ribonuclease P compare
MMP_RS08210 -2.8 -2.5 phosphatidylglycerophosphatase A compare
MMP_RS07630 -2.8 -1.8 ATP-binding cassette domain-containing protein compare
MMP_RS01875 -2.8 -11.4 N-acetyltransferase compare
MMP_RS04710 -2.8 -2.1 hypothetical protein compare
MMP_RS02135 -2.8 -6.0 DUF5612 domain-containing protein compare
MMP_RS01325 -2.8 -2.5 dihydroneopterin aldolase family protein compare
MMP_RS02280 -2.7 -1.0 DUF211 domain-containing protein compare
MMP_RS03035 -2.7 -4.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS00305 -2.7 -2.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS01975 -2.7 -10.2 hypothetical protein compare
MMP_RS01175 -2.7 -5.6 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04500 -2.7 -16.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01610 -2.6 -4.3 hypothetical protein compare
MMP_RS07735 -2.6 -1.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS03435 -2.6 -2.5 ketol-acid reductoisomerase compare
MMP_RS01830 -2.6 -2.2 tRNA-Val compare
MMP_RS00515 -2.6 -1.5 DUF655 domain-containing protein compare
MMP_RS01225 -2.6 -5.5 DUF5379 domain-containing protein compare
MMP_RS08100 -2.5 -7.5 8-amino-7-oxononanoate synthase compare
MMP_RS01500 -2.5 -3.4 CBS domain-containing protein compare
MMP_RS01970 -2.5 -5.6 TIGR04279 domain-containing protein compare
MMP_RS04685 -2.5 -4.0 DUF126 domain-containing protein compare
MMP_RS01960 -2.5 -0.6 hypothetical protein compare
MMP_RS06370 -2.5 -6.4 biotin synthase BioB compare
MMP_RS00685 -2.4 -5.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08095 -2.4 -8.1 dethiobiotin synthase compare
MMP_RS08105 -2.4 -7.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS06630 -2.4 -1.5 UPF0058 family protein compare
MMP_RS01385 -2.4 -0.9 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08745 -2.3 -7.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07580 -2.3 -3.7 DUF356 domain-containing protein compare
MMP_RS00695 -2.3 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02355 -2.3 -3.4 30S ribosomal protein S27ae compare
MMP_RS01220 -2.3 -10.8 hypothetical protein compare
MMP_RS05920 -2.3 -0.8 50S ribosomal protein L37e compare
MMP_RS04775 -2.3 -3.6 adenosylhomocysteinase compare
MMP_RS05845 -2.3 -1.9 tRNA-intron lyase compare
MMP_RS02145 -2.3 -7.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS02190 -2.3 -3.9 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01930 -2.3 -12.2 hypothetical protein compare
MMP_RS05555 -2.2 -1.4 DUF4040 domain-containing protein compare
MMP_RS06230 -2.2 -3.5 helix-turn-helix domain-containing protein compare
MMP_RS03600 -2.2 -2.4 triose-phosphate isomerase compare
MMP_RS06285 -2.2 -2.3 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03445 -2.2 -1.3 methanogenesis marker 17 protein compare
MMP_RS05250 -2.2 -2.4 NFYB/HAP3 family transcription factor subunit compare
MMP_RS06355 -2.2 -2.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01945 -2.2 -6.3 DUF4350 domain-containing protein compare
MMP_RS05265 -2.2 -2.4 2-isopropylmalate synthase compare
MMP_RS02340 -2.2 -2.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06625 -2.1 -2.4 DNA primase compare
MMP_RS07645 -2.1 -7.1 aldehyde dehydrogenase family protein compare
MMP_RS01725 -2.1 -4.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS00325 -2.1 -2.2 RNA-binding protein compare
MMP_RS06885 -2.1 -2.5 50S ribosome-binding GTPase compare
MMP_RS07380 -2.1 -2.3 transcription elongation factor Spt5 compare
MMP_RS06310 -2.1 -3.4 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS01380 -2.1 -2.5 PHP domain-containing protein compare
MMP_RS01935 -2.1 -7.8 DUF58 domain-containing protein compare
MMP_RS06340 -2.0 -6.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07195 -2.0 -10.9 M20 family metallo-hydrolase compare
MMP_RS07605 -2.0 -4.6 diadenylate cyclase compare
MMP_RS07540 -2.0 -4.4 CBS domain-containing protein compare
MMP_RS03025 -2.0 -5.8 molybdenum cofactor guanylyltransferase compare
MMP_RS06270 -2.0 -6.0 TIGR00300 family protein compare
MMP_RS02800 -2.0 -5.5 nucleotidyltransferase domain-containing protein compare
MMP_RS04585 -2.0 -10.0 AIR synthase related protein compare
MMP_RS04605 -2.0 -5.8 cobalt ECF transporter T component CbiQ compare
MMP_RS06980 -2.0 -7.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01890 -2.0 -3.0 nucleotide sugar dehydrogenase compare
MMP_RS07635 -1.9 -4.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03400 -1.9 -2.7 archease compare
MMP_RS02245 -1.9 -4.8 hypothetical protein compare
MMP_RS01950 -1.9 -6.4 hypothetical protein compare
MMP_RS08440 -1.9 -2.9 cell division protein SepF compare
MMP_RS04955 -1.9 -5.6 DNA topoisomerase I compare
MMP_RS03095 -1.9 -7.2 diphthine synthase compare
MMP_RS08460 -1.9 -2.7 proteasome-activating nucleotidase compare
MMP_RS06295 -1.9 -8.3 methanogenesis marker 14 protein compare
MMP_RS08350 -1.8 -1.1 hypothetical protein compare
MMP_RS00115 -1.8 -11.5 radical SAM protein compare
MMP_RS06400 -1.8 -1.6 4Fe-4S binding protein compare
MMP_RS06930 -1.8 -11.3 MBL fold metallo-hydrolase compare
MMP_RS00050 -1.8 -9.3 AarF/UbiB family protein compare
MMP_RS00320 -1.7 -2.2 class I SAM-dependent methyltransferase compare
MMP_RS07435 -1.7 -2.3 GMP synthase subunit A compare
MMP_RS06020 -1.7 -3.5 archaeoflavoprotein AfpA compare
MMP_RS01980 -1.7 -8.4 trimeric intracellular cation channel family protein compare
MMP_RS00810 -1.7 -7.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS06900 -1.7 -2.7 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS01800 -1.7 -4.3 TIGR00303 family protein compare
MMP_RS07860 -1.7 -0.7 hypothetical protein compare
MMP_RS03140 -1.6 -11.0 hypothetical protein compare
MMP_RS00040 -1.6 -5.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06130 -1.6 -4.5 peptidylprolyl isomerase compare
MMP_RS03580 -1.6 -2.7 signal recognition particle-docking protein FtsY compare
MMP_RS07875 -1.6 -6.2 hypothetical protein compare
MMP_RS01335 -1.6 -2.7 prefoldin subunit beta compare
MMP_RS03145 -1.6 -6.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01365 -1.6 -3.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS07425 -1.6 -5.7 GTP-binding protein compare
MMP_RS07090 -1.5 -7.4 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06940 -1.5 -3.3 polyprenyl diphosphate synthase compare
MMP_RS05425 -1.5 -3.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07200 -1.5 -4.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08890 -1.5 -8.6 glycosyltransferase family 4 protein compare
MMP_RS04850 -1.5 -10.5 UPF0254 family protein compare
MMP_RS06395 -1.5 -3.1 ThiF family adenylyltransferase compare
MMP_RS06350 -1.5 -5.1 HesA/MoeB/ThiF family protein compare
MMP_RS03640 -1.5 -2.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07695 -1.5 -6.9 DUF3236 domain-containing protein compare
MMP_RS05345 -1.4 -5.3 hypothetical protein compare
MMP_RS00315 -1.4 -6.4 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS02875 -1.4 -8.0 chorismate pyruvate-lyase family protein compare
MMP_RS06315 -1.4 -1.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08195 -1.4 -5.8 hypothetical protein compare
MMP_RS01665 -1.4 -3.1 DUF2111 domain-containing protein compare
MMP_RS03015 -1.4 -6.6 GTP 3' 8-cyclase MoaA compare
MMP_RS01840 -1.4 -5.9 TIGR00289 family protein compare
MMP_RS06865 -1.4 -1.5 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS07075 -1.3 -2.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS00900 -1.3 -1.9 50S ribosomal protein L39e compare
MMP_RS01700 -1.3 -0.9 dihydroxy-acid dehydratase compare
MMP_RS03155 -1.3 -4.9 precorrin-6A reductase compare
MMP_RS07710 -1.3 -3.5 cell division protein FtsZ compare
MMP_RS08330 -1.3 -3.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS00450 -1.3 -1.9 4Fe-4S binding protein compare
MMP_RS08645 -1.3 -5.6 UPF0179 family protein compare
MMP_RS07385 -1.3 -1.4 protein translocase SEC61 complex subunit gamma compare
MMP_RS07575 -1.3 -2.0 RNA ligase partner protein compare
MMP_RS06725 -1.3 -7.9 hypothetical protein compare
MMP_RS06105 -1.3 -5.3 hydrogenase maturation peptidase HycI compare
MMP_RS05515 -1.3 -4.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS00735 -1.2 -2.5 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS02165 -1.2 -5.0 tRNA-dihydrouridine synthase compare
MMP_RS08445 -1.2 -3.1 DUF2099 family protein compare
MMP_RS03960 -1.2 -0.9 hypothetical protein compare
MMP_RS05525 -1.2 -4.8 calcium/sodium antiporter compare
MMP_RS06770 -1.2 -4.1 DHH family phosphoesterase compare
MMP_RS00060 -1.2 -1.2 3-dehydroquinate synthase II compare
MMP_RS05800 -1.2 -5.3 B12-binding domain-containing radical SAM protein compare
MMP_RS08595 -1.2 -1.1 flagellar protein C compare
MMP_RS07355 -1.2 -0.8 transcription factor S compare
MMP_RS00725 -1.1 -4.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00720 -1.1 -4.4 metal-dependent hydrolase compare
MMP_RS04615 -1.1 -2.7 PDGLE domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms