Experiment set3IT017 for Pantoea sp. MT58

Compare to:

Defined media, anaerobic, with FW303 groundwater

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -4.6 -4.5 RNA polymerase-binding protein DksA compare
IAI47_16390 -4.4 -2.0 tRNA-Leu compare
IAI47_14945 -3.2 -4.4 pyrroline-5-carboxylate reductase compare
IAI47_16350 -2.9 -12.3 phosphoserine phosphatase compare
IAI47_05070 -2.9 -1.3 outer membrane protein assembly factor BamB compare
IAI47_15120 -2.8 -9.7 glutamate 5-kinase compare
IAI47_15115 -2.8 -12.6 glutamate-5-semialdehyde dehydrogenase compare
IAI47_17220 -2.8 -21.2 glutamate synthase large subunit compare
IAI47_00780 -2.7 -6.0 6-phosphofructokinase compare
IAI47_17185 -2.7 -9.3 RNA polymerase factor sigma-54 compare
IAI47_00915 -2.7 -15.4 argininosuccinate synthase compare
IAI47_13685 -2.6 -2.9 Tol-Pal system protein TolB compare
IAI47_09175 -2.6 -14.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_17225 -2.6 -17.4 sulfite reductase subunit alpha compare
IAI47_17965 -2.6 -15.1 glucose-6-phosphate isomerase compare
IAI47_00300 -2.6 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_00890 -2.6 -12.1 methylenetetrahydrofolate reductase compare
IAI47_09240 -2.5 -3.4 HTH-type transcriptional regulator CysB compare
IAI47_12865 -2.5 -12.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00920 -2.5 -13.3 argininosuccinate lyase compare
IAI47_00460 -2.5 -2.9 glutamate--ammonia ligase compare
IAI47_04120 -2.4 -17.3 GTP diphosphokinase compare
IAI47_04895 -2.4 -5.7 pyridoxine 5'-phosphate synthase compare
IAI47_03725 -2.4 -8.5 phosphoglycerate dehydrogenase compare
IAI47_00895 -2.4 -16.1 phosphoenolpyruvate carboxylase compare
IAI47_00880 -2.4 -14.2 cystathionine gamma-synthase compare
IAI47_01035 -2.4 -15.3 dihydroxy-acid dehydratase compare
IAI47_09165 -2.4 -9.3 tryptophan synthase subunit alpha compare
IAI47_18015 -2.4 -13.4 homoserine O-succinyltransferase compare
IAI47_18830 -2.4 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_01030 -2.4 -15.1 branched-chain amino acid transaminase compare
IAI47_07070 -2.3 -10.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_16210 -2.3 -11.1 homoserine kinase compare
IAI47_16005 -2.3 -10.9 3-isopropylmalate dehydrogenase compare
IAI47_06235 -2.3 -8.5 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_01050 -2.3 -15.1 ketol-acid reductoisomerase compare
IAI47_16015 -2.3 -8.5 3-isopropylmalate dehydratase small subunit compare
IAI47_17560 -2.3 -1.6 ROK family transcriptional regulator compare
IAI47_00905 -2.3 -11.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_01040 -2.3 -10.8 threonine ammonia-lyase, biosynthetic compare
IAI47_09580 -2.3 -3.9 FNR family transcription factor compare
IAI47_08085 -2.3 -6.1 helix-turn-helix domain-containing protein compare
IAI47_16010 -2.2 -14.6 3-isopropylmalate dehydratase large subunit compare
IAI47_09170 -2.2 -12.6 tryptophan synthase subunit beta compare
IAI47_09275 -2.2 -8.8 orotidine-5'-phosphate decarboxylase compare
IAI47_03860 -2.2 -12.9 diaminopimelate decarboxylase compare
IAI47_16115 -2.2 -16.2 carbamoyl-phosphate synthase large subunit compare
IAI47_00910 -2.2 -9.0 acetylglutamate kinase compare
IAI47_07080 -2.2 -9.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_07085 -2.1 -12.8 histidinol-phosphate transaminase compare
IAI47_07060 -2.1 -10.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_13740 -2.1 -2.4 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_16830 -2.1 -11.3 ornithine carbamoyltransferase compare
IAI47_05155 -2.1 -14.1 polyphosphate kinase 1 compare
IAI47_18040 -2.1 -14.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_13770 -2.1 -11.2 citrate synthase compare
IAI47_15485 -2.0 -1.9 molecular chaperone Skp compare
IAI47_03975 -2.0 -12.6 amino-acid N-acetyltransferase compare
IAI47_13900 -2.0 -13.5 asparagine synthase B compare
IAI47_09190 -2.0 -11.6 anthranilate synthase component 1 compare
IAI47_16080 -2.0 -7.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_16000 -2.0 -13.0 2-isopropylmalate synthase compare
IAI47_16215 -2.0 -13.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_13690 -1.9 -0.8 cell envelope integrity protein TolA compare
IAI47_07065 -1.9 -8.3 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_16120 -1.9 -9.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_07090 -1.9 -10.6 histidinol dehydrogenase compare
IAI47_10520 -1.9 -4.9 pyridoxamine 5'-phosphate oxidase compare
IAI47_05440 -1.9 -10.0 cysteine synthase A compare
IAI47_07075 -1.9 -7.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_12705 -1.9 -9.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_12215 -1.8 -10.2 dihydroorotase compare
IAI47_09180 -1.8 -9.9 anthranilate phosphoribosyltransferase compare
IAI47_09055 -1.8 -11.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_06275 -1.8 -12.9 amidophosphoribosyltransferase compare
IAI47_04835 -1.8 -8.1 ATP-dependent RNA helicase SrmB compare
IAI47_18045 -1.8 -9.9 phosphoribosylamine--glycine ligase compare
IAI47_12880 -1.8 -13.9 formate C-acetyltransferase compare
IAI47_16205 -1.8 -5.3 threonine synthase compare
IAI47_00600 -1.7 -9.1 orotate phosphoribosyltransferase compare
IAI47_13700 -1.7 -3.1 Tol-Pal system protein TolQ compare
IAI47_07095 -1.7 -7.1 ATP phosphoribosyltransferase compare
IAI47_12885 -1.7 -7.7 pyruvate formate lyase 1-activating protein compare
IAI47_08440 -1.7 -2.5 crossover junction endodeoxyribonuclease RuvC compare
IAI47_16860 -1.7 -10.6 aspartate carbamoyltransferase compare
IAI47_16870 -1.6 -7.7 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_04930 -1.6 -12.3 phosphoribosylformylglycinamidine synthase compare
IAI47_05275 -1.6 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_13475 -1.6 -5.2 molybdopterin synthase catalytic subunit MoaE compare
IAI47_04410 -1.5 -10.3 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_00110 -1.5 -6.5 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_04160 -1.5 -8.6 phosphoadenylyl-sulfate reductase compare
IAI47_05425 -1.5 -4.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_05180 -1.5 -8.9 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_08450 -1.4 -3.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_09305 -1.4 -3.1 cyclic di-GMP phosphodiesterase compare
IAI47_17035 -1.3 -2.9 ribosome maturation factor RimP compare
IAI47_05745 -1.3 -2.2 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_14350 -1.3 -6.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_00465 -1.3 -1.9 ribosome-dependent GTPase TypA compare
IAI47_17005 -1.2 -5.9 polyribonucleotide nucleotidyltransferase compare
IAI47_18400 -1.2 -2.4 tyrosine recombinase XerC compare
IAI47_11475 -1.2 -1.5 hypothetical protein compare
IAI47_15540 -1.2 -6.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_17900 -1.2 -1.0 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_09185 -1.2 -3.5 glutamine amidotransferase compare
IAI47_18055 -1.2 -5.6 DNA-binding protein HU-alpha compare
IAI47_17020 -1.1 -2.0 30S ribosome-binding factor RbfA compare
IAI47_00515 -1.1 -1.8 DNA-directed RNA polymerase subunit omega compare
IAI47_03685 -1.1 -6.3 erythrose-4-phosphate dehydrogenase compare
IAI47_12790 -1.1 -1.1 chromosome partition protein MukE compare
IAI47_16930 -1.0 -5.0 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_01365 -1.0 -1.4 inorganic phosphate transporter PitA compare
IAI47_16600 -1.0 -1.8 tRNA-OTHER compare
IAI47_03855 -1.0 -6.5 LysR family transcriptional regulator compare
IAI47_18315 -1.0 -4.7 HTH-type transcriptional regulator MetR compare
IAI47_21035 -1.0 -3.0 TetR/AcrR family transcriptional regulator compare
IAI47_07165 -1.0 -1.7 exodeoxyribonuclease I compare
IAI47_03375 -1.0 -5.6 peptide chain release factor 3 compare
IAI47_02695 -0.9 -6.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_06400 -0.9 -1.6 NADH-quinone oxidoreductase subunit J compare
IAI47_12570 -0.9 -1.3 tRNA-Ser compare
IAI47_00900 -0.9 -7.2 acetylornithine deacetylase compare
IAI47_00410 -0.9 -6.9 molybdenum cofactor guanylyltransferase MobA compare
IAI47_13140 -0.9 -6.1 molybdopterin molybdotransferase MoeA compare
IAI47_10840 -0.9 -3.5 pyruvate kinase PykF compare
IAI47_06940 -0.9 -1.0 tyrosine-protein kinase Wzc compare
IAI47_16925 -0.9 -7.7 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_01025 -0.9 -5.5 acetolactate synthase 2 small subunit compare
IAI47_12915 -0.9 -5.7 leucine-responsive transcriptional regulator Lrp compare
IAI47_09395 -0.9 -2.8 phage shock protein PspA compare
IAI47_02585 -0.9 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_08705 -0.9 -6.5 carboxy terminal-processing peptidase compare
IAI47_06365 -0.9 -3.0 NADH-quinone oxidoreductase subunit B compare
IAI47_06320 -0.9 -4.1 phosphate acetyltransferase compare
IAI47_00445 -0.9 -6.2 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_19945 -0.8 -1.1 hypothetical protein compare
IAI47_18310 -0.8 -6.7 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_04155 -0.8 -6.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_13935 -0.8 -1.3 tRNA-Gln compare
IAI47_00455 -0.8 -5.2 nitrogen regulation protein NR(II) compare
IAI47_04270 -0.8 -5.3 respiratory nitrate reductase subunit gamma compare
IAI47_06055 -0.8 -2.7 tRNA-Arg compare
IAI47_09010 -0.8 -3.8 formyltetrahydrofolate deformylase compare
IAI47_12030 -0.8 -5.8 PTS glucose transporter subunit IIBC compare
IAI47_08430 -0.8 -2.6 dihydroneopterin triphosphate diphosphatase compare
IAI47_16190 -0.8 -3.9 molybdopterin adenylyltransferase compare
IAI47_12920 -0.8 -2.1 thioredoxin-disulfide reductase compare
IAI47_04865 -0.7 -1.3 SoxR-reducing system protein RseC compare
IAI47_06325 -0.7 -3.2 acetate kinase compare
IAI47_11310 -0.7 -2.3 redox-regulated ATPase YchF compare
IAI47_13485 -0.7 -3.4 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_13145 -0.7 -4.2 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_03595 -0.7 -3.0 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_14400 -0.7 -5.4 copper-exporting P-type ATPase CopA compare
IAI47_04260 -0.7 -5.7 nitrate reductase subunit beta compare
IAI47_13480 -0.7 -1.9 molybdopterin synthase sulfur carrier subunit compare
IAI47_09210 -0.7 -2.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_07175 -0.7 -5.3 FUSC family protein compare
IAI47_04425 -0.7 -3.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_17120 -0.7 -1.8 BolA family iron metabolism protein IbaG compare
IAI47_15990 -0.7 -5.7 acetolactate synthase 3 large subunit compare
IAI47_13495 -0.7 -3.6 GTP 3',8-cyclase MoaA compare
IAI47_15985 -0.7 -4.1 acetolactate synthase small subunit compare
IAI47_00655 -0.7 -1.4 glycosyltransferase family 4 protein compare
IAI47_04190 -0.7 -3.6 adenylyl-sulfate kinase compare
IAI47_02400 -0.7 -1.4 YhdT family protein compare
IAI47_16095 -0.7 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_04255 -0.6 -5.8 nitrate reductase subunit alpha compare
IAI47_16220 -0.6 -2.9 thr operon leader peptide compare
IAI47_04265 -0.6 -3.9 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_18595 -0.6 -5.0 endoglucanase compare
IAI47_01020 -0.6 -4.8 acetolactate synthase 2 catalytic subunit compare
IAI47_07450 -0.6 -2.1 winged helix-turn-helix domain-containing protein compare
IAI47_02090 -0.6 -1.6 elongation factor Tu compare
IAI47_15575 -0.6 -4.5 vitamin B12 ABC transporter substrate-binding protein BtuF compare
IAI47_00875 -0.6 -1.2 met regulon transcriptional regulator MetJ compare
IAI47_00485 -0.6 -4.3 fatty acid biosynthesis protein FabY compare
IAI47_03100 -0.6 -5.0 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
IAI47_21880 -0.6 -0.7 ParA family protein compare
IAI47_03820 -0.6 -1.7 site-specific tyrosine recombinase XerD compare
IAI47_18530 -0.6 -1.4 thioredoxin TrxA compare
IAI47_18410 -0.6 -1.9 diaminopimelate epimerase compare
IAI47_14980 -0.6 -2.6 hypothetical protein compare
IAI47_00710 -0.6 -4.7 glycosyltransferase compare
IAI47_04300 -0.6 -3.0 recombinase RecA compare
IAI47_04150 -0.6 -4.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_13950 -0.6 -0.8 PhoH family protein compare
IAI47_17255 -0.5 -1.3 DUF1043 family protein compare
IAI47_12110 -0.5 -1.6 ribonuclease E compare
IAI47_00755 -0.5 -4.2 envelope stress sensor histidine kinase CpxA compare
IAI47_16520 -0.5 -3.4 hypothetical protein compare
IAI47_10935 -0.5 -2.3 vitamin B12 ABC transporter ATP-binding protein BtuD compare
IAI47_09245 -0.5 -1.6 YmiA family putative membrane protein compare
IAI47_10890 -0.5 -4.5 FAD-binding oxidoreductase compare
IAI47_15995 -0.5 -0.7 leu operon leader peptide compare
IAI47_05630 -0.5 -1.9 hypothetical protein compare
IAI47_12470 -0.5 -4.3 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_19050 -0.5 -1.1 hypothetical protein compare
IAI47_01005 -0.5 -3.8 DUF413 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress FW303_groundwater across organisms