Experiment set3IT017 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 8; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -4.5 -5.4 NUDIX domain-containing protein compare
ABZR87_RS08630 -4.5 -3.1 dihydroorotase compare
ABZR87_RS08695 -4.1 -12.7 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS02145 -3.7 -2.5 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS13790 -3.5 -5.4 chorismate synthase compare
ABZR87_RS14115 -3.5 -3.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS11330 -3.3 -2.7 transcriptional repressor LexA compare
ABZR87_RS08990 -3.3 -3.2 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS22920 -3.2 -4.4 phosphogluconate dehydratase compare
ABZR87_RS14535 -3.0 -3.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02075 -3.0 -2.1 23S ribosomal RNA compare
ABZR87_RS02640 -3.0 -10.9 diaminopimelate decarboxylase compare
ABZR87_RS12965 -2.9 -4.0 tail protein X compare
ABZR87_RS05100 -2.9 -3.4 RNA polymerase-binding protein DksA compare
ABZR87_RS05305 -2.9 -8.7 TetR family transcriptional regulator compare
ABZR87_RS07510 -2.8 -2.0 LysR family transcriptional regulator compare
ABZR87_RS14965 -2.8 -1.9 DUF3619 family protein compare
ABZR87_RS08645 -2.8 -1.3 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS08970 -2.7 -4.4 protein TolQ compare
ABZR87_RS06350 -2.6 -9.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS18695 -2.5 -7.2 sugar-binding transcriptional regulator compare
ABZR87_RS08795 -2.5 -1.7 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS15715 -2.4 -6.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS02590 -2.4 -7.0 3-dehydroquinate synthase compare
ABZR87_RS14490 -2.4 -6.4 tryptophan synthase subunit alpha compare
ABZR87_RS02160 -2.4 -4.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS13705 -2.3 -1.6 integration host factor subunit alpha compare
ABZR87_RS13475 -2.3 -4.5 PAS domain S-box protein compare
ABZR87_RS22690 -2.3 -3.1 XRE family transcriptional regulator compare
ABZR87_RS06400 -2.3 -6.3 response regulator transcription factor compare
ABZR87_RS12145 -2.3 -4.0 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS02155 -2.2 -6.2 anthranilate phosphoribosyltransferase compare
ABZR87_RS12150 -2.2 -2.6 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS02595 -2.1 -7.8 shikimate kinase compare
ABZR87_RS00435 -2.1 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS21950 -2.1 -5.5 hypothetical protein compare
ABZR87_RS16080 -2.1 -2.4 P-II family nitrogen regulator compare
ABZR87_RS02655 -2.1 -6.7 anti-sigma factor compare
ABZR87_RS10170 -2.1 -3.7 RseA family anti-sigma factor compare
ABZR87_RS14190 -2.1 -9.0 DUF2589 domain-containing protein compare
ABZR87_RS14500 -2.1 -9.5 tryptophan synthase subunit beta compare
ABZR87_RS22415 -2.1 -2.1 universal stress protein compare
ABZR87_RS22910 -2.0 -2.3 6-phosphogluconolactonase compare
ABZR87_RS01810 -2.0 -2.4 glutamate 5-kinase compare
ABZR87_RS10980 -2.0 -1.2 tRNA-Leu compare
ABZR87_RS11125 -2.0 -4.1 cell division protein ZapE compare
ABZR87_RS16185 -2.0 -1.4 dCTP deaminase compare
ABZR87_RS02550 -2.0 -2.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS01255 -2.0 -9.5 LysR substrate-binding domain-containing protein compare
ABZR87_RS04975 -2.0 -1.9 peptide deformylase compare
ABZR87_RS02445 -2.0 -2.7 Sec-independent protein translocase protein TatB compare
ABZR87_RS12955 -2.0 -4.4 terminase endonuclease subunit compare
ABZR87_RS10175 -1.9 -4.3 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS12785 -1.9 -1.3 endopeptidase La compare
ABZR87_RS08985 -1.9 -7.2 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS02380 -1.9 -7.3 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS11760 -1.9 -1.2 membrane protein compare
ABZR87_RS01700 -1.9 -1.6 DUF2147 domain-containing protein compare
ABZR87_RS07050 -1.9 -1.3 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS04105 -1.9 -3.1 ATP synthase subunit I compare
ABZR87_RS06030 -1.8 -1.2 AraC family transcriptional regulator compare
ABZR87_RS05200 -1.8 -10.4 homoserine O-acetyltransferase compare
ABZR87_RS11245 -1.8 -3.5 translational GTPase TypA compare
ABZR87_RS20555 -1.8 -4.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS13645 -1.8 -1.1 hypothetical protein compare
ABZR87_RS09625 -1.8 -5.1 CobD/CbiB family protein compare
ABZR87_RS05570 -1.8 -4.3 lysophospholipid acyltransferase family protein compare
ABZR87_RS02440 -1.8 -4.7 twin-arginine translocase subunit TatC compare
ABZR87_RS13300 -1.7 -2.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS14540 -1.7 -4.3 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02565 -1.7 -4.0 glutamate synthase subunit beta compare
ABZR87_RS04945 -1.7 -1.6 DUF4390 domain-containing protein compare
ABZR87_RS20680 -1.7 -2.3 SDR family oxidoreductase compare
ABZR87_RS07360 -1.7 -6.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02375 -1.7 -5.8 cytochrome c1 compare
ABZR87_RS13285 -1.7 -8.3 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS01450 -1.7 -3.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS07380 -1.7 -8.9 FAD/FMN-binding oxidoreductase compare
ABZR87_RS07035 -1.7 -2.3 RNase adapter RapZ compare
ABZR87_RS19675 -1.6 -1.3 cold-shock protein compare
ABZR87_RS22970 -1.6 -7.2 cystathionine gamma-synthase family protein compare
ABZR87_RS06845 -1.6 -6.6 heme o synthase compare
ABZR87_RS16340 -1.6 -2.5 ABC transporter ATP-binding protein compare
ABZR87_RS14505 -1.6 -3.7 phosphoribosylanthranilate isomerase compare
ABZR87_RS12330 -1.6 -1.8 hypothetical protein compare
ABZR87_RS01035 -1.6 -3.6 histidine utilization repressor compare
ABZR87_RS08585 -1.6 -1.9 chemotaxis protein CheW compare
ABZR87_RS06705 -1.6 -7.9 glutamate--cysteine ligase compare
ABZR87_RS02140 -1.6 -9.6 anthranilate synthase component I compare
ABZR87_RS08980 -1.6 -3.0 cell envelope integrity protein TolA compare
ABZR87_RS19485 -1.6 -2.0 H-NS histone family protein compare
ABZR87_RS17145 -1.6 -9.5 AMP nucleosidase compare
ABZR87_RS21365 -1.6 -1.3 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS03420 -1.5 -1.0 type II secretion system minor pseudopilin GspI compare
ABZR87_RS13250 -1.5 -2.5 phosphoserine phosphatase SerB compare
ABZR87_RS01685 -1.5 -4.6 histone H1-like DNA-binding protein compare
ABZR87_RS19370 -1.5 -1.9 hypothetical protein compare
ABZR87_RS07355 -1.5 -4.9 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS11160 -1.5 -3.9 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR87_RS21245 -1.5 -1.2 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS09445 -1.5 -6.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS13400 -1.5 -1.1 hypothetical protein compare
ABZR87_RS10190 -1.5 -3.6 translation elongation factor 4 compare
ABZR87_RS17650 -1.5 -4.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13290 -1.5 -3.4 3-ketoacyl-ACP reductase compare
ABZR87_RS16125 -1.5 -4.5 heme biosynthesis protein HemY compare
ABZR87_RS16960 -1.5 -1.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS12970 -1.4 -2.7 putative holin compare
ABZR87_RS21285 -1.4 -2.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS12950 -1.4 -5.2 phage major capsid protein, P2 family compare
ABZR87_RS03850 -1.4 -3.1 ureidoglycolate lyase compare
ABZR87_RS10900 -1.4 -3.7 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS02545 -1.4 -3.4 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS14675 -1.4 -0.9 glyoxalase compare
ABZR87_RS09450 -1.4 -3.7 prephenate dehydratase compare
ABZR87_RS00685 -1.4 -2.8 hypothetical protein compare
ABZR87_RS10930 -1.4 -1.3 outer membrane protein assembly factor BamB compare
ABZR87_RS11255 -1.4 -3.8 rhodanese-like domain-containing protein compare
ABZR87_RS01275 -1.4 -4.0 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS01615 -1.3 -0.7 RNB domain-containing ribonuclease compare
ABZR87_RS14605 -1.3 -7.7 aconitate hydratase AcnA compare
ABZR87_RS03180 -1.3 -1.5 hypothetical protein compare
ABZR87_RS08610 -1.3 -3.8 YqgE/AlgH family protein compare
ABZR87_RS03425 -1.3 -5.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS04880 -1.3 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS15405 -1.3 -2.1 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS10700 -1.3 -4.3 C40 family peptidase compare
ABZR87_RS16170 -1.3 -1.5 argininosuccinate lyase compare
ABZR87_RS20505 -1.3 -1.4 hypothetical protein compare
ABZR87_RS02485 -1.3 -1.0 MarC family protein compare
ABZR87_RS22980 -1.3 -2.2 hypothetical protein compare
ABZR87_RS04865 -1.2 -1.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS11265 -1.2 -1.7 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS08700 -1.2 -2.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS03430 -1.2 -6.0 type II secretion system minor pseudopilin GspK compare
ABZR87_RS03460 -1.2 -6.8 type II secretion system inner membrane protein GspF compare
ABZR87_RS02535 -1.2 -2.5 phospholipid-binding protein MlaC compare
ABZR87_RS12945 -1.2 -2.4 GPO family capsid scaffolding protein compare
ABZR87_RS12960 -1.2 -1.1 head completion/stabilization protein compare
ABZR87_RS20155 -1.2 -2.9 type VI secretion system-associated protein TagF compare
ABZR87_RS16735 -1.2 -7.0 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS15505 -1.2 -0.9 DNA polymerase III subunit alpha compare
ABZR87_RS04940 -1.2 -2.3 PAS domain-containing sensor histidine kinase compare
ABZR87_RS10525 -1.2 -1.0 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS03410 -1.2 -3.6 type II secretion system major pseudopilin GspG compare
ABZR87_RS04270 -1.2 -2.9 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS06355 -1.2 -3.9 SPOR domain-containing protein compare
ABZR87_RS05470 -1.2 -2.4 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS20440 -1.2 -0.9 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS03435 -1.2 -4.1 type II secretion system protein GspL compare
ABZR87_RS14380 -1.2 -3.9 glutamate racemase compare
ABZR87_RS14530 -1.2 -3.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS07055 -1.1 -4.4 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS17625 -1.1 -1.9 SDR family oxidoreductase compare
ABZR87_RS04835 -1.1 -2.2 hypothetical protein compare
ABZR87_RS20875 -1.1 -3.9 LysR family transcriptional regulator compare
ABZR87_RS03455 -1.1 -6.0 type II secretion system ATPase GspE compare
ABZR87_RS02385 -1.1 -2.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS11440 -1.1 -3.8 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS20690 -1.1 -1.1 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS18445 -1.1 -1.9 MaoC family dehydratase compare
ABZR87_RS16540 -1.1 -2.3 MarR family transcriptional regulator compare
ABZR87_RS20160 -1.1 -1.9 OmpA family protein compare
ABZR87_RS16055 -1.1 -3.7 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS16860 -1.1 -1.5 response regulator compare
ABZR87_RS14890 -1.1 -0.8 preprotein translocase subunit SecG compare
ABZR87_RS02680 -1.1 -5.0 c-type cytochrome compare
ABZR87_RS08650 -1.1 -3.6 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS23380 -1.1 -0.9 chemotaxis protein CheW compare
ABZR87_RS10195 -1.1 -1.5 signal peptidase I compare
ABZR87_RS08950 -1.1 -2.5 transcriptional regulator NrdR compare
ABZR87_RS20430 -1.1 -2.1 YfiR family protein compare
ABZR87_RS04265 -1.1 -4.5 phenylalanine 4-monooxygenase compare
ABZR87_RS17865 -1.1 -1.0 cation:proton antiporter compare
ABZR87_RS15225 -1.1 -2.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS16270 -1.1 -0.9 cold-shock protein compare
ABZR87_RS18000 -1.1 -2.2 protein phosphatase CheZ compare
ABZR87_RS15365 -1.0 -2.3 YkvA family protein compare
ABZR87_RS17760 -1.0 -1.2 ATP-binding cassette domain-containing protein compare
ABZR87_RS17310 -1.0 -2.7 PadR family transcriptional regulator compare
ABZR87_RS08070 -1.0 -1.1 pyruvate kinase compare
ABZR87_RS02570 -1.0 -7.5 glutamate synthase-related protein compare
ABZR87_RS01645 -1.0 -2.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS09465 -1.0 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS15240 -1.0 -1.5 YicC/YloC family endoribonuclease compare
ABZR87_RS12790 -1.0 -1.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS10420 -1.0 -2.6 TatD family hydrolase compare
ABZR87_RS09000 -1.0 -3.8 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS22390 -1.0 -3.0 alpha/beta fold hydrolase compare
ABZR87_RS11195 -1.0 -3.3 pseudouridine synthase compare
ABZR87_RS21810 -1.0 -2.1 enoyl-CoA hydratase compare
ABZR87_RS06455 -1.0 -1.8 IclR family transcriptional regulator compare
ABZR87_RS06715 -1.0 -2.0 PTS sugar transporter subunit IIA compare
ABZR87_RS21570 -1.0 -3.0 FAD-binding oxidoreductase compare
ABZR87_RS02540 -1.0 -2.3 VacJ family lipoprotein compare
ABZR87_RS14125 -1.0 -2.0 YhbY family RNA-binding protein compare
ABZR87_RS18875 -1.0 -2.5 nitrite reductase small subunit NirD compare
ABZR87_RS01110 -1.0 -3.8 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS21955 -0.9 -3.1 hypothetical protein compare
ABZR87_RS01225 -0.9 -1.2 YggS family pyridoxal phosphate-dependent enzyme compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in rhizosphere experiments