Experiment set3IT016 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 0.025 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_769 -3.8 -6.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_4772 -3.1 -6.4 RND efflux system, inner membrane transporter CmeB conserved
Pf1N1B4_1307 -2.8 -3.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2106 -2.5 -4.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1399 -2.5 -4.9 FIG003573: hypothetical protein compare
Pf1N1B4_2021 -2.5 -2.8 hypothetical protein compare
Pf1N1B4_3582 -2.4 -2.8 C-methyltransferase compare
Pf1N1B4_875 -2.2 -4.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2004 -2.1 -3.1 putative membrane protein compare
Pf1N1B4_2105 -2.1 -3.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1 -2.0 -2.7 Colicin V production protein compare
Pf1N1B4_4035 -1.9 -3.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_1906 -1.9 -4.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2401 -1.9 -1.8 Lipoprotein, putative compare
Pf1N1B4_327 -1.7 -2.9 hypothetical protein compare
Pf1N1B4_4181 -1.7 -3.5 FIG00957123: hypothetical protein compare
Pf1N1B4_3795 -1.7 -3.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_683 -1.7 -4.3 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_69 -1.7 -3.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4957 -1.6 -1.8 Transcriptional regulator, TetR family compare
Pf1N1B4_1462 -1.6 -10.3 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_1315 -1.6 -7.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_4028 -1.6 -3.9 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_888 -1.5 -4.1 Transglycosylase, Slt family compare
Pf1N1B4_2037 -1.5 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_1403 -1.4 -6.8 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_959 -1.4 -9.6 Stringent starvation protein A compare
Pf1N1B4_1246 -1.4 -1.8 FIG00954047: hypothetical protein compare
Pf1N1B4_2114 -1.4 -5.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3305 -1.4 -3.0 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_4611 -1.4 -2.6 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_4040 -1.3 -2.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3499 -1.3 -2.0 hypothetical protein compare
Pf1N1B4_1472 -1.3 -1.7 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_652 -1.3 -7.5 Sensory box histidine kinase compare
Pf1N1B4_675 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_3119 -1.2 -2.2 Holin compare
Pf1N1B4_4429 -1.2 -2.2 No significant database matches compare
Pf1N1B4_275 -1.2 -2.4 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_5722 -1.2 -1.9 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_2684 -1.2 -2.4 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_5498 -1.2 -1.5 hypothetical protein compare
Pf1N1B4_4759 -1.2 -1.7 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_2609 -1.2 -8.4 Catalase (EC 1.11.1.6) compare
Pf1N1B4_1837 -1.2 -1.9 Osmotically inducible protein C compare
Pf1N1B4_2071 -1.2 -1.8 Protein phosphatase ImpM compare
Pf1N1B4_3143 -1.2 -3.1 RecA protein compare
Pf1N1B4_3468 -1.2 -2.0 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_3812 -1.2 -6.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_756 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_2005 -1.1 -1.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_835 -1.1 -2.5 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_3246 -1.1 -2.5 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_4531 -1.1 -1.8 FIG01221261: hypothetical protein compare
Pf1N1B4_866 -1.1 -1.6 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_298 -1.1 -2.1 Transcription elongation factor GreB compare
Pf1N1B4_1370 -1.1 -1.4 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_899 -1.0 -1.4 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_2227 -1.0 -1.9 FIG019278: hypothetical protein compare
Pf1N1B4_5991 -1.0 -1.5 Transcriptional regulator, AraC family compare
Pf1N1B4_4731 -1.0 -2.9 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4039 -1.0 -4.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_260 -1.0 -3.1 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_1561 -1.0 -2.4 FIG00954300: hypothetical protein compare
Pf1N1B4_5721 -1.0 -1.8 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_3328 -1.0 -1.8 Rhodanese-like domain protein compare
Pf1N1B4_3729 -0.9 -1.8 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_430 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_1386 -0.9 -2.9 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) compare
Pf1N1B4_2432 -0.9 -1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_4776 -0.9 -2.6 Nicotinamidase (EC 3.5.1.19) compare
Pf1N1B4_3168 -0.9 -2.1 AmpG permease compare
Pf1N1B4_4357 -0.9 -2.2 Putrescine utilization regulator compare
Pf1N1B4_3316 -0.9 -2.7 Tricarboxylate transport transcriptional regulator TctD compare
Pf1N1B4_5747 -0.9 -2.1 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_5278 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_1568 -0.9 -2.8 Twin-arginine translocation protein TatB compare
Pf1N1B4_3044 -0.9 -2.6 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf1N1B4_3685 -0.9 -3.0 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_3751 -0.9 -1.9 FIG00953060: hypothetical protein compare
Pf1N1B4_3445 -0.9 -2.5 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_5724 -0.9 -1.9 High-affinity iron permease compare
Pf1N1B4_115 -0.8 -1.8 Membrane protein mosC compare
Pf1N1B4_5383 -0.8 -4.6 hypothetical protein compare
Pf1N1B4_2891 -0.8 -3.0 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_5689 -0.8 -2.1 Lactoylglutathione lyase compare
Pf1N1B4_1617 -0.8 -4.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_58 -0.8 -3.7 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_5386 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_5690 -0.8 -1.8 Putative TEGT family carrier/transport protein compare
Pf1N1B4_3833 -0.8 -5.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4293 -0.8 -2.5 hypothetical protein compare
Pf1N1B4_4030 -0.8 -1.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1511 -0.8 -1.2 FIG027190: Putative transmembrane protein compare
Pf1N1B4_2706 -0.8 -2.2 FIG00954871: hypothetical protein compare
Pf1N1B4_1827 -0.8 -2.5 FIG00953482: hypothetical protein compare
Pf1N1B4_1296 -0.8 -5.4 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) compare
Pf1N1B4_3745 -0.8 -2.1 Thiamin ABC transporter, transmembrane component compare
Pf1N1B4_289 -0.8 -6.3 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_795 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_3451 -0.8 -2.0 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_1993 -0.8 -1.5 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_961 -0.8 -6.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_2612 -0.8 -2.5 Putative transport protein compare
Pf1N1B4_5720 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_4857 -0.8 -3.4 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3447 -0.8 -3.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_1469 -0.8 -6.3 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_5370 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_3458 -0.8 -0.9 hypothetical protein compare
Pf1N1B4_407 -0.8 -1.5 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_5628 -0.8 -1.8 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_2209 -0.8 -4.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_5071 -0.8 -2.1 FIG00959535: hypothetical protein compare
Pf1N1B4_5187 -0.7 -0.7 5S RNA compare
Pf1N1B4_4932 -0.7 -2.4 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_1317 -0.7 -1.9 Sensor histidine kinase/response regulator compare
Pf1N1B4_4476 -0.7 -2.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_2169 -0.7 -1.9 FIG00953808: hypothetical protein compare
Pf1N1B4_5995 -0.7 -1.5 Transporter, MFS superfamily compare
Pf1N1B4_2026 -0.7 -2.1 Transcriptional regulator compare
Pf1N1B4_4051 -0.7 -2.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_4810 -0.7 -2.1 Polymyxin resistance protein PmrM compare
Pf1N1B4_4333 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_4590 -0.7 -2.0 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_2196 -0.7 -2.3 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2959 -0.7 -3.0 FIG067310: hypothetical protein compare
Pf1N1B4_617 -0.7 -1.2 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_1310 -0.7 -2.2 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1191 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_3081 -0.7 -6.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4777 -0.7 -2.0 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_4627 -0.7 -1.0 FIG00957600: hypothetical protein compare
Pf1N1B4_5357 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_5119 -0.7 -2.5 Putative hemagglutinin/hemolysin-related protein compare
Pf1N1B4_3764 -0.7 -1.9 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_4729 -0.7 -1.5 Hemolysin-type calcium-binding region compare
Pf1N1B4_2352 -0.7 -3.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_4011 -0.7 -2.3 Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3) compare
Pf1N1B4_5838 -0.7 -1.5 FIG00956589: hypothetical protein compare
Pf1N1B4_2145 -0.7 -1.0 Translation initiation inhibitor compare
Pf1N1B4_3259 -0.7 -2.2 FIG00956006: hypothetical protein compare
Pf1N1B4_1294 -0.7 -1.4 VgrG protein compare
Pf1N1B4_3811 -0.7 -1.8 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_4667 -0.7 -2.0 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_5460 -0.7 -2.3 TolA protein compare
Pf1N1B4_5294 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_3093 -0.7 -1.2 Outer membrane protein H precursor compare
Pf1N1B4_876 -0.7 -2.3 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_3991 -0.7 -1.4 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_5575 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_5010 -0.7 -3.1 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Pf1N1B4_5043 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_4145 -0.7 -0.8 hypothetical protein compare
Pf1N1B4_2917 -0.7 -4.1 FIG140336: TPR domain protein compare
Pf1N1B4_1611 -0.7 -2.2 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3184 -0.7 -1.5 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_4755 -0.7 -1.6 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_3364 -0.6 -1.7 Cyn operon transcriptional activator compare
Pf1N1B4_4979 -0.6 -1.7 Transcriptional regulator, AsnC family compare
Pf1N1B4_1958 -0.6 -1.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2712 -0.6 -2.7 tRNA-i(6)A37 methylthiotransferase compare
Pf1N1B4_419 -0.6 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_47 -0.6 -2.0 Copper resistance protein D compare
Pf1N1B4_5113 -0.6 -2.5 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_4636 -0.6 -1.4 TPR domain protein in aerotolerance operon compare
Pf1N1B4_3190 -0.6 -2.3 Outer membrane protein A precursor compare
Pf1N1B4_5255 -0.6 -1.3 hypothetical protein compare
Pf1N1B4_1234 -0.6 -2.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3538 -0.6 -1.2 Transcriptional regulator, AraC family compare
Pf1N1B4_615 -0.6 -1.4 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_4612 -0.6 -1.5 FIG00954117: hypothetical protein compare
Pf1N1B4_381 -0.6 -1.4 hypothetical protein compare
Pf1N1B4_5835 -0.6 -2.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4404 -0.6 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_960 -0.6 -4.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_962 -0.6 -4.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_3724 -0.6 -2.8 DNA recombination protein RmuC compare
Pf1N1B4_5588 -0.6 -1.6 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_3609 -0.6 -1.6 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf1N1B4_4560 -0.6 -1.6 Transcriptional regulator, MerR family compare
Pf1N1B4_981 -0.6 -1.9 UPF0246 protein YaaA compare
Pf1N1B4_4246 -0.6 -1.4 L-lactate permease compare
Pf1N1B4_910 -0.6 -1.6 Cyanate transport protein CynX compare
Pf1N1B4_5145 -0.6 -2.8 Permeases of the major facilitator superfamily compare
Pf1N1B4_6030 -0.6 -1.3 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) compare
Pf1N1B4_4555 -0.6 -1.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_1128 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_3552 -0.6 -2.2 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_855 -0.6 -1.2 FIG021952: putative membrane protein compare
Pf1N1B4_72 -0.6 -1.1 Transcriptional regulator, LysR family compare
Pf1N1B4_4717 -0.6 -0.9 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_1866 -0.6 -1.7 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_457 -0.6 -3.2 Periplasmic serine proteases (ClpP class) compare
Pf1N1B4_5962 -0.6 -1.4 hypothetical protein compare
Pf1N1B4_3744 -0.6 -2.3 ABC transporter, ATP-binding protein compare
Pf1N1B4_4358 -0.6 -1.0 Acetyltransferase, GNAT family compare
Pf1N1B4_5967 -0.6 -1.3 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Pf1N1B4_348 -0.6 -2.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4761 -0.6 -1.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Pseudomonas fluorescens FW300-N1B4

For stress Spectinomycin dihydrochloride pentahydrate across organisms