Experiment set3IT016 for Rhodospirillum rubrum S1H

Compare to:

Valeric acid 25 mM; anaerobic

200 most important genes:

  gene name fitness t score description  
Rru_A3558 -5.2 -1.9 Protein of unknown function UPF0005 (NCBI) compare
Rru_A3341 -5.0 -3.4 Acetylglutamate kinase (NCBI) compare
Rru_A1190 -4.8 -1.8 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A1239 -4.3 -1.6 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A1775 -4.2 -3.2 chromosome segregation and condensation protein ScpA (NCBI) compare
Rru_A3751 -4.0 -16.3 Argininosuccinate synthase (NCBI) compare
Rru_A3425 -4.0 -10.2 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A0394 -4.0 -5.1 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A1105 -3.9 -5.9 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A1894 -3.9 -5.1 heavy metal translocating P-type ATPase (NCBI) compare
Rru_A2886 -3.8 -25.4 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A0876 -3.8 -1.2 hypothetical protein (NCBI) compare
Rru_A0058 -3.7 -1.0 Dihydrokaempferol 4-reductase (NCBI) compare
Rru_A1837 -3.7 -5.0 Porphobilinogen synthase (NCBI) compare
Rru_A3277 -3.6 -6.2 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A3276 -3.6 -7.8 Ornithine carbamoyltransferase (NCBI) compare
Rru_A1897 -3.6 -5.2 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A2980 -3.5 -12.5 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A2771 -3.5 -6.1 Histidinol dehydrogenase (NCBI) compare
Rru_A3227 -3.5 -9.4 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A0619 -3.4 -2.0 Magnesium protoporphyrin O-methyltransferase (NCBI) compare
Rru_A3264 -3.3 -10.6 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3428 -3.3 -16.4 Tryptophan synthase (NCBI) compare
Rru_A1896 -3.3 -9.9 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A1021 -3.3 -1.8 Sigma 32 (RpoH) (NCBI) compare
Rru_A1189 -3.3 -13.8 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A2974 -3.3 -12.0 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A0617 -3.3 -6.0 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A1620 -3.3 -1.0 hypothetical protein (NCBI) compare
Rru_A3266 -3.3 -14.5 Homoserine O-acetyltransferase (NCBI) compare
Rru_A3162 -3.2 -15.8 Prephenate dehydratase (NCBI) compare
Rru_A1827 -3.2 -13.1 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A2421 -3.2 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A0397 -3.2 -6.3 Argininosuccinate lyase (NCBI) compare
Rru_A2975 -3.1 -12.1 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A2847 -3.1 -1.2 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A0621 -3.0 -15.4 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A0486 -3.0 -9.8 von Willebrand factor, type A (NCBI) compare
Rru_A3267 -2.9 -7.7 Methionine biosynthesis MetW (NCBI) compare
Rru_A0469 -2.9 -13.5 Ketol-acid reductoisomerase (NCBI) compare
Rru_A2979 -2.9 -5.5 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A2370 -2.9 -2.2 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A2978 -2.9 -9.7 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A0620 -2.9 -6.3 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A1786 -2.8 -18.9 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A0627 -2.8 -7.0 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A3427 -2.7 -12.7 Tryptophan synthase, beta chain (NCBI) compare
Rru_A0622 -2.7 -9.4 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A0624 -2.7 -9.5 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A1530 -2.7 -14.3 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A3548 -2.6 -11.2 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A0274 -2.6 -3.9 Acetyl-CoA C-acetyltransferase (NCBI) compare
Rru_A0596 -2.6 -4.2 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI) compare
Rru_A2936 -2.6 -11.7 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A3285 -2.5 -3.1 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A2525 -2.5 -11.3 Peptidase U32 (NCBI) compare
Rru_A3594 -2.5 -1.9 Histidine biosynthesis protein HisF (NCBI) compare
Rru_B0049 -2.5 -2.0 dTDP-4-dehydrorhamnose reductase (NCBI) compare
Rru_A3380 -2.5 -1.8 hypothetical protein (NCBI) compare
Rru_A0467 -2.5 -14.6 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A2981 -2.5 -6.9 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A3190 -2.5 -2.9 Aspartate carbamoyltransferase (NCBI) compare
Rru_A0485 -2.4 -6.7 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A1928 -2.4 -12.3 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A2983 -2.4 -1.0 Polyprenyl synthetase (NCBI) compare
Rru_A1191 -2.4 -12.1 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A3214 -2.4 -9.8 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_B0005 -2.3 -1.0 Glycosyl transferase (NCBI) compare
Rru_A0052 -2.3 -14.0 Biotin carboxylase (NCBI) compare
Rru_A0053 -2.3 -10.5 Carboxyl transferase (NCBI) compare
Rru_A0468 -2.2 -4.8 Acetolactate synthase, small subunit (NCBI) compare
Rru_A2524 -2.2 -11.4 Peptidase U32 (NCBI) compare
Rru_A3547 -2.1 -4.4 hypothetical protein (NCBI) compare
Rru_A2885 -2.1 -7.3 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A1895 -2.0 -2.0 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A2952 -2.0 -2.3 Methyltransferase small (NCBI) compare
Rru_A0574 -2.0 -2.0 Carboxylyase-related protein (NCBI) compare
Rru_A2403 -2.0 -10.3 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A2400 -2.0 -9.7 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A0752 -2.0 -1.7 hypothetical protein (NCBI) compare
Rru_A2982 -2.0 -5.2 O-methyltransferase, family 2 (NCBI) compare
Rru_A2549 -1.9 -7.2 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A2182 -1.9 -2.2 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2181 -1.9 -10.3 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A2404 -1.9 -9.9 Phosphoribulokinase (NCBI) compare
Rru_A0159 -1.8 -2.1 Exodeoxyribonuclease VII (NCBI) compare
Rru_A3627 -1.8 -4.6 Cobyrinic acid a,c-diamide synthase (NCBI) compare
Rru_A3704 -1.8 -5.7 Periplasmic solute binding protein (NCBI) compare
Rru_A0514 -1.8 -7.0 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A1865 -1.7 -4.4 Dihydrodipicolinate synthase subfamily (NCBI) compare
Rru_A3165 -1.7 -5.8 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A2772 -1.7 -1.7 ATP phosphoribosyltransferase (NCBI) compare
Rru_A3393 -1.6 -3.7 Penicillin-binding protein 1A (NCBI) compare
Rru_A2183 -1.6 -4.4 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2992 -1.6 -2.7 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A3009 -1.6 -3.3 Aminotransferase class-III (NCBI) compare
Rru_A2099 -1.5 -6.3 surface antigen (NCBI) compare
Rru_A3010 -1.5 -4.8 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0265 -1.5 -3.7 Electron-transferring-flavoproteindehydrogenase (NCBI) compare
Rru_A1849 -1.5 -2.0 Recombination protein O, RecO (NCBI) compare
Rru_A0484 -1.5 -5.6 hypothetical protein (NCBI) compare
Rru_A2002 -1.5 -3.5 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (NCBI) compare
Rru_A2167 -1.4 -6.4 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A2100 -1.4 -3.3 Protein of unknown function DUF81 (NCBI) compare
Rru_A1804 -1.4 -4.2 N-acetyltransferase (NCBI) compare
Rru_A0435 -1.4 -10.5 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A2507 -1.4 -8.4 Orotate phosphoribosyl transferase (NCBI) compare
Rru_A0908 -1.4 -1.1 microcompartments protein (NCBI) compare
Rru_A0615 -1.4 -2.1 photosynthetic complex assembly protein (NCBI) compare
Rru_A1608 -1.4 -6.3 MscS Mechanosensitive ion channel (NCBI) compare
Rru_A0618 -1.3 -4.2 PUCC protein (NCBI) compare
Rru_A3801 -1.3 -1.4 Enoyl-CoA hydratase/isomerase (NCBI) compare
Rru_A0023 -1.3 -2.6 hypothetical protein (NCBI) compare
Rru_A3502 -1.3 -0.5 hypothetical protein (NCBI) compare
Rru_A2098 -1.3 -3.6 Protein of unknown function DUF490 (NCBI) compare
Rru_A2038 -1.3 -5.6 Glutamate-ammonia-ligase adenylyltransferase (NCBI) compare
Rru_A1432 -1.3 -7.5 Nicotinate-nucleotide pyrophosphorylase (NCBI) compare
Rru_A3766 -1.3 -3.8 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A2510 -1.3 -1.4 hypothetical protein (NCBI) compare
Rru_A3687 -1.3 -4.1 Cobalt transport protein (NCBI) compare
Rru_A2902 -1.2 -0.5 hypothetical protein (NCBI) compare
Rru_A3424 -1.2 -2.2 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A0086 -1.2 -1.2 Protein of unknown function DUF188 (NCBI) compare
Rru_A0181 -1.2 -2.4 hypothetical protein (NCBI) compare
Rru_A3191 -1.2 -5.5 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A1767 -1.2 -1.4 peptidase M23B (NCBI) compare
Rru_A2029 -1.2 -0.6 Serine O-acetyltransferase (NCBI) compare
Rru_A1890 -1.1 -1.2 hypothetical protein (NCBI) compare
Rru_A1286 -1.1 -0.6 hypothetical protein (NCBI) compare
Rru_A0206 -1.1 -1.4 Cobalt chelatase, pCobS small subunit (NCBI) compare
Rru_A0670 -1.1 -1.6 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A1771 -1.1 -1.3 Sec-independent periplasmic protein translocase (NCBI) compare
Rru_A0399 -1.1 -0.7 Phosphoesterase, PA-phosphatase related (NCBI) compare
Rru_A3739 -1.1 -2.5 hypothetical protein (NCBI) compare
Rru_A1309 -1.1 -5.3 acetoacetyl-CoA reductase (NCBI) compare
Rru_A0580 -1.1 -1.7 OsmC-like protein (NCBI) compare
Rru_A2085 -1.1 -2.0 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) compare
Rru_A0207 -1.1 -2.3 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A0764 -1.1 -2.7 HesB/YadR/YfhF (NCBI) compare
Rru_B0050 -1.1 -1.9 dTDP-glucose 4,6-dehydratase (NCBI) compare
Rru_A3527 -1.0 -3.3 Protein of unknown function YGGT (NCBI) compare
Rru_A1311 -1.0 -2.1 Transcriptional Regulator, MerR family (NCBI) compare
Rru_A2989 -1.0 -2.7 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A0556 -1.0 -5.1 Formyltetrahydrofolate deformylase (NCBI) compare
Rru_A1536 -1.0 -3.0 UvrD/REP helicase (NCBI) compare
Rru_A2004 -1.0 -1.4 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A0834 -1.0 -1.4 Protein of unknown function DUF196 (NCBI) compare
Rru_A0404 -1.0 -7.8 Amidophosphoribosyl transferase (NCBI) compare
Rru_A3688 -1.0 -4.2 ABC transporter component (NCBI) compare
Rru_A1525 -1.0 -1.8 Nucleoside diphosphate pyrophosphatase (NCBI) compare
Rru_A1552 -0.9 -1.4 Peptidase S16, ATP-dependent protease La (NCBI) compare
Rru_A3164 -0.9 -1.5 hypothetical protein (NCBI) compare
Rru_A0021 -0.9 -1.2 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A3150 -0.9 -1.3 ABC transporter component (NCBI) compare
Rru_A1962 -0.9 -2.5 hypothetical protein (NCBI) compare
Rru_A2656 -0.9 -1.0 ATP12 ATPase (NCBI) compare
Rru_A1950 -0.9 -0.8 Transcriptional regulator, ModE family (NCBI) compare
Rru_A2398 -0.9 -6.4 Pyruvate-ferredoxin (flavodoxin) oxidoreductase (NCBI) compare
Rru_A0616 -0.9 -4.2 photosynthetic complex assembly protein (NCBI) compare
Rru_A2255 -0.9 -2.9 Uracil phosphoribosyl transferase (NCBI) compare
Rru_A0406 -0.9 -3.2 DNA repair protein RadA (NCBI) compare
Rru_A0753 -0.9 -5.1 Chaperone clpB (NCBI) compare
Rru_A1571 -0.9 -2.0 metallo-beta-lactamase (NCBI) compare
Rru_A0150 -0.9 -2.9 hypothetical protein (NCBI) compare
Rru_A2937 -0.9 -1.1 Asparagine synthase, glutamine-hydrolyzing (NCBI) compare
Rru_A0922 -0.9 -0.9 Protein of unknown function DUF1044 (NCBI) compare
Rru_A2616 -0.9 -6.0 Histone deacetylase superfamily (NCBI) compare
Rru_A2805 -0.9 -2.2 Protein of unknown function DUF214 (NCBI) compare
Rru_A2935 -0.9 -2.5 PAS/PAC Sensor Hybrid Histidine Kinase (NCBI) compare
Rru_A3088 -0.9 -2.9 hypothetical protein (NCBI) compare
Rru_A3743 -0.9 -0.7 hypothetical protein (NCBI) compare
Rru_A0041 -0.9 -0.9 Cytochrome c, class II (NCBI) compare
Rru_A0151 -0.8 -1.0 hypothetical protein (NCBI) compare
Rru_A3256 -0.8 -1.7 Protein of unknown function DUF218 (NCBI) compare
Rru_A3359 -0.8 -3.5 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A0817 -0.8 -1.6 Transposase, mutator type (NCBI) compare
Rru_A2001 -0.8 -4.7 hypothetical protein (NCBI) compare
Rru_A1051 -0.8 -1.7 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) compare
Rru_A1529 -0.8 -4.0 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A0164 -0.8 -4.3 Sulfate transporter/antisigma-factor antagonist (NCBI) compare
Rru_A3748 -0.8 -1.6 hypothetical protein (NCBI) compare
Rru_A2016 -0.8 -1.5 hypothetical protein (NCBI) compare
Rru_A1014 -0.8 -2.1 hypothetical protein (NCBI) compare
Rru_A0668 -0.8 -1.3 Cobalamin-5-phosphate synthase CobS (NCBI) compare
Rru_A1255 -0.8 -2.3 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A3694 -0.8 -2.0 hypothetical protein (NCBI) compare
Rru_A2264 -0.8 -1.4 ferredoxin (NCBI) compare
Rru_A1366 -0.8 -1.9 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2479 -0.8 -4.5 Methylmalonyl-CoA mutase-like (NCBI) compare
Rru_A1275 -0.8 -0.9 hypothetical protein (NCBI) compare
Rru_A2530 -0.8 -2.6 hypothetical protein (NCBI) compare
Rru_A0341 -0.8 -1.4 hypothetical protein (NCBI) compare
Rru_A2057 -0.8 -0.8 Molybdopterin-guanine dinucleotide biosynthesis MobB region (NCBI) compare
Rru_A1677 -0.8 -2.9 Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) compare
Rru_A0770 -0.8 -2.3 Peptidase M23B (NCBI) compare
Rru_A2166 -0.8 -2.2 hypothetical protein (NCBI) compare
Rru_A2986 -0.8 -2.8 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A3614 -0.8 -2.3 Maf-like protein (NCBI) compare
Rru_A3060 -0.8 -2.6 hypothetical protein (NCBI) compare
Rru_A2497 -0.8 -3.0 Peptide chain release factor 3 (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in carbon source experiments

For carbon source Valeric acid across organisms