Experiment set3IT016 for Pantoea sp. MT58

Compare to:

Defined media, anaerobic, with FW303 groundwater

200 most detrimental genes:

  gene name fitness t score description  
IAI47_11415 +1.4 2.6 hypothetical protein compare
IAI47_07790 +1.1 2.2 ribose 1,5-bisphosphokinase compare
IAI47_13765 +1.1 3.1 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_11375 +1.0 3.2 hypothetical protein compare
IAI47_10500 +1.0 8.2 dipeptide/tripeptide permease DtpA compare
IAI47_00935 +1.0 5.4 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_08845 +0.9 2.3 cell division topological specificity factor MinE compare
IAI47_18470 +0.9 8.3 ECA oligosaccharide polymerase compare
IAI47_00870 +0.9 1.1 50S ribosomal protein L31 compare
IAI47_18480 +0.8 6.5 lipid III flippase WzxE compare
IAI47_08745 +0.8 2.8 transcription antiterminator/RNA stability regulator CspE compare
IAI47_07020 +0.8 1.7 hypothetical protein compare
IAI47_00670 +0.8 7.4 sugar glycosyltransferase compare
IAI47_19890 +0.8 1.8 hypothetical protein compare
IAI47_09360 +0.8 0.9 peptide ABC transporter ATP-binding protein SapF compare
IAI47_01750 +0.7 4.7 glycerol-3-phosphate dehydrogenase compare
IAI47_14695 +0.7 3.5 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_00675 +0.7 6.6 glycosyltransferase family 9 protein compare
IAI47_03645 +0.7 6.2 O-antigen ligase family protein compare
IAI47_09550 +0.7 3.6 hypothetical protein compare
IAI47_00290 +0.7 3.2 F0F1 ATP synthase subunit I compare
IAI47_03400 +0.7 4.3 deoxyribose-phosphate aldolase compare
IAI47_03640 +0.6 5.8 glycosyltransferase compare
IAI47_14680 +0.6 3.6 cytochrome o ubiquinol oxidase subunit II compare
IAI47_05520 +0.6 1.3 tRNA-Ala compare
IAI47_14685 +0.6 5.2 cytochrome o ubiquinol oxidase subunit I compare
IAI47_18490 +0.6 3.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_14690 +0.6 3.7 cytochrome o ubiquinol oxidase subunit III compare
IAI47_05765 +0.6 1.4 hypothetical protein compare
IAI47_12435 +0.6 2.3 hypothetical protein compare
IAI47_18215 +0.6 1.5 Trk system potassium transporter TrkH compare
IAI47_12985 +0.6 2.4 heavy metal-binding domain-containing protein compare
IAI47_03135 +0.6 3.5 outer membrane channel protein TolC compare
IAI47_07025 +0.6 3.1 glycosyltransferase family 4 protein compare
IAI47_08445 +0.6 1.1 Holliday junction branch migration protein RuvA compare
IAI47_14700 +0.6 3.6 protoheme IX farnesyltransferase compare
IAI47_14835 +0.6 5.0 branched-chain amino acid transporter carrier protein BrnQ compare
IAI47_08035 +0.6 1.4 flagellar hook-basal body complex protein FliE compare
IAI47_15895 +0.6 1.6 secA regulator SecM compare
IAI47_19690 +0.6 1.0 hypothetical protein compare
IAI47_06390 +0.6 1.7 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_14465 +0.5 2.3 recombination protein RecR compare
IAI47_17315 +0.5 2.6 FxsA family protein compare
IAI47_10825 +0.5 1.0 tRNA-Val compare
IAI47_16405 +0.5 1.9 siderophore-iron reductase FhuF compare
IAI47_06900 +0.5 1.7 phosphatase PAP2 family protein compare
IAI47_01820 +0.5 3.1 two-component system response regulator OmpR compare
IAI47_08010 +0.5 2.9 flagella biosynthesis chaperone FliJ compare
IAI47_10835 +0.5 0.9 tRNA-Val compare
IAI47_15690 +0.5 2.6 hypoxanthine phosphoribosyltransferase compare
IAI47_18520 +0.5 4.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_06475 +0.5 2.4 transcriptional regulator RcsB compare
IAI47_11630 +0.5 1.6 hypothetical protein compare
IAI47_17050 +0.5 2.8 preprotein translocase subunit SecG compare
IAI47_06455 +0.5 2.3 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_18420 +0.5 3.7 class I adenylate cyclase compare
IAI47_14785 +0.5 1.9 DUF3251 domain-containing protein compare
IAI47_12060 +0.5 1.8 beta-ketoacyl-ACP synthase II compare
IAI47_13065 +0.4 1.2 DUF1418 family protein compare
IAI47_14705 +0.4 3.1 MFS transporter compare
IAI47_15600 +0.4 1.2 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_02035 +0.4 1.5 YheV family putative metal-binding protein compare
IAI47_07030 +0.4 2.5 HAD family hydrolase compare
IAI47_15875 +0.4 2.7 cell division protein ZapD compare
IAI47_00565 +0.4 2.1 DUF3289 family protein compare
IAI47_17215 +0.4 0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_18505 +0.4 3.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI47_09110 +0.4 2.3 hypothetical protein compare
IAI47_03915 +0.4 1.4 RNA pyrophosphohydrolase compare
IAI47_14470 +0.4 1.1 YbaB/EbfC family nucleoid-associated protein compare
IAI47_19050 +0.4 1.1 hypothetical protein compare
IAI47_04800 +0.4 0.7 RnfH family protein compare
IAI47_01525 +0.4 1.4 DUF2500 domain-containing protein compare
IAI47_06675 +0.4 1.2 DUF1232 domain-containing protein compare
IAI47_08610 +0.4 1.8 tail fiber assembly protein compare
IAI47_10675 +0.4 1.7 hypothetical protein compare
IAI47_11400 +0.4 3.1 hypothetical protein compare
IAI47_08015 +0.4 2.4 flagellum-specific ATP synthase FliI compare
IAI47_02495 +0.4 1.6 hypothetical protein compare
IAI47_03385 +0.4 2.0 DUF1328 domain-containing protein compare
IAI47_00845 +0.4 2.7 HslU--HslV peptidase ATPase subunit compare
IAI47_16085 +0.4 0.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_11360 +0.4 1.4 hypothetical protein compare
IAI47_06415 +0.4 1.4 NADH-quinone oxidoreductase subunit M compare
IAI47_01825 +0.4 2.6 two-component system sensor histidine kinase EnvZ compare
IAI47_04070 +0.4 1.9 flavodoxin compare
IAI47_17150 +0.4 2.3 hypothetical protein compare
IAI47_20705 +0.4 0.7 sulfur carrier protein ThiS compare
IAI47_05045 +0.4 2.5 type IV pilus biogenesis/stability protein PilW compare
IAI47_03670 +0.4 1.8 DUF937 domain-containing protein compare
IAI47_06450 +0.4 1.5 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_16320 +0.4 2.2 DNA-binding transcriptional repressor DeoR compare
IAI47_18465 +0.4 2.9 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_13935 +0.4 0.7 tRNA-Gln compare
IAI47_10740 +0.4 2.2 hypothetical protein compare
IAI47_17710 +0.3 2.9 glutamate/aspartate:proton symporter GltP compare
IAI47_08740 +0.3 2.1 DUF2627 domain-containing protein compare
IAI47_02400 +0.3 0.8 YhdT family protein compare
IAI47_00825 +0.3 3.0 glycerol kinase GlpK compare
IAI47_12650 +0.3 1.8 macrodomain Ter protein MatP compare
IAI47_08910 +0.3 1.1 DUF1480 family protein compare
IAI47_15145 +0.3 2.3 beta-Ala-His dipeptidase compare
IAI47_18240 +0.3 1.0 NAD(P)H-flavin reductase compare
IAI47_13850 +0.3 1.2 LexA regulated protein compare
IAI47_20555 +0.3 1.7 ATP-binding cassette domain-containing protein compare
IAI47_07490 +0.3 1.3 DNA-binding protein compare
IAI47_03240 +0.3 1.2 TonB system transport protein ExbD compare
IAI47_08435 +0.3 1.4 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_04095 +0.3 2.2 2-dehydro-3-deoxyglucarate aldolase compare
IAI47_02890 +0.3 2.2 EnvZ/OmpR regulon moderator MzrA compare
IAI47_01740 +0.3 1.1 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_07015 +0.3 1.6 ABC transporter ATP-binding protein compare
IAI47_18475 +0.3 2.5 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_08285 +0.3 2.5 flagellar transcriptional regulator FlhC compare
IAI47_09400 +0.3 1.2 envelope stress response membrane protein PspB compare
IAI47_06650 +0.3 2.3 fused PTS fructose transporter subunit IIA/HPr protein compare
IAI47_15595 +0.3 0.7 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_03235 +0.3 1.7 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_09105 +0.3 1.4 YciY family protein compare
IAI47_19600 +0.3 1.3 ABC transporter ATP-binding protein compare
IAI47_00850 +0.3 2.1 ATP-dependent protease subunit HslV compare
IAI47_10230 +0.3 1.9 dipeptidase compare
IAI47_01690 +0.3 2.7 glucose-1-phosphate adenylyltransferase compare
IAI47_20065 +0.3 1.6 YebG family protein compare
IAI47_02520 +0.3 2.4 malate dehydrogenase compare
IAI47_17825 +0.3 1.5 MmcQ/YjbR family DNA-binding protein compare
IAI47_18485 +0.3 2.6 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_03805 +0.3 1.5 FAD assembly factor SdhE compare
IAI47_01655 +0.3 2.1 gluconokinase compare
IAI47_09285 +0.3 1.2 osmotically-inducible lipoprotein OsmB compare
IAI47_08990 +0.3 2.2 exodeoxyribonuclease III compare
IAI47_08470 +0.3 2.5 murein DD-endopeptidase MepM compare
IAI47_21665 +0.3 0.8 DUF333 domain-containing protein compare
IAI47_11065 +0.3 1.6 excinuclease Cho compare
IAI47_14960 +0.3 1.2 anti-adapter protein IraP compare
IAI47_11195 +0.3 1.7 SH3 domain-containing protein compare
IAI47_05195 +0.3 0.7 DnaA inactivator Hda compare
IAI47_20000 +0.3 1.1 PTS sugar transporter subunit IIB compare
IAI47_19320 +0.3 1.9 LysE family translocator compare
IAI47_20415 +0.3 2.1 two-component system response regulator DcuR compare
IAI47_19950 +0.3 1.9 SDR family oxidoreductase compare
IAI47_12140 +0.3 1.9 flagellar basal-body rod protein FlgG compare
IAI47_08280 +0.3 2.2 flagellar transcriptional regulator FlhD compare
IAI47_06625 +0.3 2.1 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_21335 +0.3 1.5 RepB family plasmid replication initiator protein compare
IAI47_02605 +0.3 2.2 protease modulator HflC compare
IAI47_08590 +0.3 1.2 hypothetical protein compare
IAI47_00130 +0.3 2.3 LacI family DNA-binding transcriptional regulator compare
IAI47_06655 +0.3 0.9 1-phosphofructokinase compare
IAI47_09350 +0.3 1.8 oxidoreductase compare
IAI47_06265 +0.3 2.0 cell division protein DedD compare
IAI47_19515 +0.3 2.2 hypothetical protein compare
IAI47_16250 +0.3 1.3 inosine/xanthosine triphosphatase compare
IAI47_09545 +0.3 1.8 two-component system response regulator RstA compare
IAI47_06380 +0.3 0.9 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_15625 +0.3 1.1 RNA 2',3'-cyclic phosphodiesterase compare
IAI47_08820 +0.3 2.2 ATP-dependent DNA helicase compare
IAI47_07810 +0.3 1.5 phosphonate ABC transporter, permease protein PhnE compare
IAI47_14930 +0.3 1.2 shikimate kinase AroL compare
IAI47_04725 +0.3 1.2 hypothetical protein compare
IAI47_10925 +0.3 1.1 EAL domain-containing protein compare
IAI47_13075 +0.3 1.7 hypothetical protein compare
IAI47_09980 +0.3 1.6 VOC family protein compare
IAI47_09790 +0.3 1.1 DUF1161 domain-containing protein compare
IAI47_05305 +0.3 1.3 ArsC family reductase compare
IAI47_14570 +0.3 1.8 YbaY family lipoprotein compare
IAI47_19730 +0.3 2.1 fasciclin domain-containing protein compare
IAI47_05405 +0.3 1.5 cysteine synthase CysM compare
IAI47_06410 +0.3 1.2 NADH-quinone oxidoreductase subunit L compare
IAI47_05810 +0.3 0.7 hypothetical protein compare
IAI47_17775 +0.3 2.0 YjcB family protein compare
IAI47_20700 +0.3 1.4 thiazole synthase compare
IAI47_17435 +0.3 1.6 DUF4123 domain-containing protein compare
IAI47_13750 +0.3 1.2 succinate dehydrogenase iron-sulfur subunit compare
IAI47_17250 +0.3 2.2 cell division protein ZapE compare
IAI47_13675 +0.3 1.7 cell division protein CpoB compare
IAI47_04720 +0.3 1.6 endonuclease/exonuclease/phosphatase family protein compare
IAI47_05050 +0.3 1.4 cytoskeleton protein RodZ compare
IAI47_15285 +0.3 1.1 oxalurate catabolism protein HpxX compare
IAI47_07000 +0.3 2.0 UDP-glucose 4-epimerase GalE compare
IAI47_11985 +0.3 1.8 NAD(P)/FAD-dependent oxidoreductase compare
IAI47_04855 +0.3 1.4 anti-sigma-E factor RseA compare
IAI47_21180 +0.3 1.1 IS6 family transposase compare
IAI47_08500 +0.3 1.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
IAI47_03170 +0.3 1.4 antibiotic biosynthesis monooxygenase compare
IAI47_05720 +0.3 1.4 hypothetical protein compare
IAI47_10720 +0.3 1.4 transcriptional regulator SlyA compare
IAI47_07535 +0.3 1.9 site-specific DNA-methyltransferase compare
IAI47_14910 +0.3 1.7 recombination-associated protein RdgC compare
IAI47_03765 +0.3 1.3 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_19500 +0.3 1.8 Insecticidal toxin complex protein tccz compare
IAI47_13725 +0.3 1.3 cytochrome ubiquinol oxidase subunit I compare
IAI47_05120 +0.3 1.1 DUF2158 domain-containing protein compare
IAI47_20440 +0.2 1.4 SDR family oxidoreductase compare
IAI47_16865 +0.2 1.7 aspartate carbamoyltransferase regulatory subunit compare
IAI47_19935 +0.2 1.3 hypothetical protein compare
IAI47_21105 +0.2 1.9 GNAT family N-acetyltransferase compare
IAI47_07005 +0.2 1.3 glycosyltransferase family 4 protein compare
IAI47_17980 +0.2 1.5 capsule biosynthesis GfcC family protein compare
IAI47_16060 +0.2 1.8 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress FW303_groundwater across organisms