Experiment set3IT016 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium nitrate nitrogen source; high aeration

200 most important genes:

  gene name fitness t score description  
HSERO_RS20310 -7.5 -5.0 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS16505 -7.3 -6.6 3-isopropylmalate dehydratase small subunit compare
HSERO_RS20330 -6.7 -4.6 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS16515 -6.6 -11.0 isopropylmalate isomerase compare
HSERO_RS18430 -6.2 -7.4 chorismate mutase compare
HSERO_RS08650 -6.2 -10.7 acetolactate synthase compare
HSERO_RS19450 -6.0 -2.9 indole-3-glycerol-phosphate synthase compare
HSERO_RS15555 -6.0 -7.4 oxidoreductase compare
HSERO_RS16500 -5.9 -6.2 3-isopropylmalate dehydrogenase compare
HSERO_RS00795 -5.9 -4.1 glycerol-3-phosphate dehydrogenase compare
HSERO_RS04340 -5.8 -7.1 gamma-glutamyl ligase compare
HSERO_RS15680 -5.8 -10.4 chemotaxis protein CheY compare
HSERO_RS19445 -5.8 -10.0 anthranilate phosphoribosyltransferase compare
HSERO_RS01935 -5.7 -7.1 3-dehydroquinate dehydratase compare
HSERO_RS20315 -5.7 -3.9 imidazole glycerol phosphate synthase compare
HSERO_RS16480 -5.6 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS15685 -5.6 -14.0 histidine kinase compare
HSERO_RS18990 -5.6 -7.6 pyrroline-5-carboxylate reductase compare
HSERO_RS15550 -5.5 -5.3 sulfite reductase compare
HSERO_RS02330 -5.4 -8.2 aspartate carbamoyltransferase compare
HSERO_RS19510 -5.3 -9.0 threonine dehydratase compare
HSERO_RS10865 -5.3 -12.8 PII uridylyl-transferase compare
HSERO_RS19595 -5.3 -14.4 glutamate synthase compare
HSERO_RS07160 -5.2 -5.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS20345 -5.1 -6.9 histidinol dehydrogenase compare
HSERO_RS17185 -5.1 -9.4 2-isopropylmalate synthase compare
HSERO_RS15575 -5.0 -2.0 uroporphyrin-III C-methyltransferase compare
HSERO_RS15585 -5.0 -13.2 cobalamin biosynthesis protein CbiX compare
HSERO_RS02650 -5.0 -9.4 dihydroxy-acid dehydratase compare
HSERO_RS08660 -4.8 -7.2 ketol-acid reductoisomerase compare
HSERO_RS02340 -4.8 -15.2 dihydroorotase compare
HSERO_RS19435 -4.7 -9.0 anthranilate synthase subunit I compare
HSERO_RS00455 -4.7 -9.8 homoserine O-acetyltransferase compare
HSERO_RS20320 -4.7 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS01815 -4.5 -8.5 gamma-glutamyl kinase compare
HSERO_RS04335 -4.2 -4.6 sodium:proton antiporter compare
HSERO_RS20350 -4.1 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS02325 -4.0 -7.8 uracil phosphoribosyltransferase compare
HSERO_RS16470 -4.0 -3.6 tryptophan synthase subunit alpha compare
HSERO_RS17815 -4.0 -2.7 glycosyl transferase compare
HSERO_RS15570 -3.8 -7.8 sulfate adenylyltransferase compare
HSERO_RS20920 -3.7 -5.1 3-dehydroquinate synthase compare
HSERO_RS14540 -3.6 -7.0 nitrite reductase conserved
HSERO_RS16475 -3.6 -2.3 tryptophan synthase subunit alpha compare
HSERO_RS14535 -3.6 -13.4 nitrite reductase conserved
HSERO_RS16660 -3.5 -6.0 NAD-dependent dehydratase compare
HSERO_RS15565 -3.4 -4.3 sulfate adenylyltransferase subunit 2 compare
HSERO_RS22335 -3.3 -8.7 nitrate response regulator protein conserved
HSERO_RS10495 -3.3 -10.4 molybdenum cofactor biosynthesis protein MoaE conserved
HSERO_RS18425 -3.3 -2.7 prephenate dehydrogenase compare
HSERO_RS16440 -3.1 -2.9 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS07390 -3.0 -12.1 tartrate dehydrogenase compare
HSERO_RS15560 -3.0 -7.1 phosphoadenosine phosphosulfate reductase compare
HSERO_RS20325 -3.0 -3.5 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS09255 -3.0 -3.3 molybdenum cofactor biosynthesis protein MogA compare
HSERO_RS00800 -3.0 -4.9 hypothetical protein compare
HSERO_RS01990 -3.0 -11.3 shikimate 5-dehydrogenase compare
HSERO_RS10460 -2.9 -1.5 homoserine dehydrogenase compare
HSERO_RS02140 -2.9 -1.6 thiamine-phosphate synthase compare
HSERO_RS09050 -2.8 -5.6 2-aminoadipate aminotransferase compare
HSERO_RS14550 -2.8 -14.9 nitrate reductase conserved
HSERO_RS03300 -2.8 -2.9 molybdenum cofactor biosynthesis protein MoaC compare
HSERO_RS07400 -2.7 -5.6 LysR family transcriptional regulator compare
HSERO_RS09400 -2.7 -5.3 molybdopterin-guanine dinucleotide biosynthesis protein A conserved
HSERO_RS14530 -2.6 -7.3 MFS transporter conserved
HSERO_RS00835 -2.5 -4.2 molybdopterin biosynthesis protein MoeB compare
HSERO_RS10455 -2.5 -8.3 aminotransferase compare
HSERO_RS11070 -2.4 -4.9 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS14545 -2.4 -10.3 nitrite reductase conserved
HSERO_RS02130 -2.4 -6.5 thiazole synthase compare
HSERO_RS16885 -2.4 -0.9 magnesium-transporting ATPase compare
HSERO_RS04230 -2.3 -5.0 LuxR family transcriptional regulator compare
HSERO_RS20355 -2.2 -3.4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS19590 -2.2 -1.1 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS02120 -2.2 -10.2 phosphomethylpyrimidine synthase ThiC compare
HSERO_RS03085 -2.2 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS11085 -2.1 -7.5 L-aspartate oxidase compare
HSERO_RS04325 -2.1 -6.2 helicase I compare
HSERO_RS03595 -2.1 -3.8 cation transporter compare
HSERO_RS09395 -2.1 -9.6 molybdenum cofactor biosynthesis protein MoaA conserved
HSERO_RS11065 -2.1 -2.3 quinolinate synthetase compare
HSERO_RS13655 -2.1 -5.1 hypothetical protein compare
HSERO_RS00965 -2.0 -1.1 trehalose-phosphatase compare
HSERO_RS17110 -2.0 -2.9 ribonuclease H compare
HSERO_RS02135 -1.9 -6.1 phosphomethylpyrimidine kinase compare
HSERO_RS02125 -1.8 -6.1 thiamine biosynthesis protein ThiS compare
HSERO_RS21935 -1.7 -1.9 cytochrome C compare
HSERO_RS08655 -1.7 -2.2 acetolactate synthase compare
HSERO_RS09405 -1.7 -4.3 molybdenum cofactor biosynthesis protein MoeA compare
HSERO_RS05515 -1.6 -0.8 glucose-6-phosphate isomerase compare
HSERO_RS00430 -1.6 -2.9 glutamate--cysteine ligase compare
HSERO_RS17810 -1.6 -0.6 glycosyl transferase compare
HSERO_RS13965 -1.6 -1.6 single-stranded DNA exonuclease compare
HSERO_RS13645 -1.6 -5.3 membrane protein compare
HSERO_RS07935 -1.5 -6.5 serine acetyltransferase compare
HSERO_RS05910 -1.5 -2.3 phosphoribosylglycinamide formyltransferase compare
HSERO_RS13240 -1.5 -3.5 cobalamin biosynthesis protein CobD compare
HSERO_RS04330 -1.5 -4.5 ATP-dependent exonuclease compare
HSERO_RS01315 -1.5 -2.8 transcriptional regulator compare
HSERO_RS09770 -1.5 -4.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS01260 -1.5 -1.6 3-hydroxyacyl-CoA dehydrogenase compare
HSERO_RS13660 -1.5 -2.4 membrane protein compare
HSERO_RS13275 -1.4 -2.6 cobalamin biosynthesis protein CbiG compare
HSERO_RS13260 -1.4 -3.8 cobinamide adenolsyltransferase compare
HSERO_RS00425 -1.4 -5.6 ammonia channel protein conserved
HSERO_RS13255 -1.4 -4.6 cobyrinic acid a,c-diamide synthase compare
HSERO_RS15835 -1.4 -1.6 aspartate aminotransferase compare
HSERO_RS22990 -1.3 -4.5 transcriptional regulator compare
HSERO_RS22980 -1.3 -6.1 membrane protein compare
HSERO_RS05500 -1.3 -1.8 transaldolase compare
HSERO_RS06145 -1.3 -1.2 NrdR family transcriptional regulator compare
HSERO_RS21345 -1.3 -4.4 cell division inhibitor MinD compare
HSERO_RS13265 -1.2 -3.4 G3E family GTPase compare
HSERO_RS04235 -1.2 -8.1 C4-dicarboxylate ABC transporter compare
HSERO_RS08405 -1.2 -0.6 membrane protein compare
HSERO_RS02205 -1.2 -1.8 phosphatase compare
HSERO_RS13230 -1.2 -1.8 cobyric acid synthase compare
HSERO_RS13650 -1.2 -3.3 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS19815 -1.2 -5.8 phytanoyl-CoA dioxygenase compare
HSERO_RS10395 -1.2 -1.5 phosphate transport regulator compare
HSERO_RS06650 -1.1 -1.7 MarR family transcriptional regulator compare
HSERO_RS10815 -1.1 -4.6 chromosome segregation protein SMC compare
HSERO_RS08015 -1.1 -2.2 MerR family transcriptional regulator compare
HSERO_RS13310 -1.0 -5.0 cobaltochelatase compare
HSERO_RS21740 -1.0 -5.5 methionine synthase compare
HSERO_RS06530 -1.0 -1.0 muconolactone delta-isomerase compare
HSERO_RS09220 -1.0 -3.2 hypothetical protein compare
HSERO_RS21475 -1.0 -1.8 recombinase XerC compare
HSERO_RS01165 -1.0 -4.7 dihydroneopterin triphosphate pyrophosphatase compare
HSERO_RS07275 -1.0 -2.9 D-amino acid dehydrogenase compare
HSERO_RS02215 -1.0 -0.5 D-arabinitol 4-dehydrogenase compare
HSERO_RS17900 -1.0 -2.0 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS17980 -1.0 -1.9 GTP-binding protein compare
HSERO_RS13305 -1.0 -2.6 magnesium chelatase compare
HSERO_RS09745 -0.9 -1.6 chemotaxis protein CheY compare
HSERO_RS05340 -0.9 -2.8 short-chain dehydrogenase compare
HSERO_RS18525 -0.9 -3.8 hypothetical protein compare
HSERO_RS13880 -0.9 -1.4 hypothetical protein compare
HSERO_RS16835 -0.9 -4.5 phosphatidylglycerophosphatase compare
HSERO_RS00975 -0.9 -3.2 alpha,alpha-trehalose-phosphate synthase compare
HSERO_RS19460 -0.9 -2.7 LysR family transcriptional regulator compare
HSERO_RS16275 -0.9 -1.2 5-hydroxyisourate hydrolase compare
HSERO_RS13270 -0.9 -3.2 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS06170 -0.9 -1.8 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS13320 -0.9 -2.7 membrane protein compare
HSERO_RS13285 -0.9 -1.1 precorrin-2 C20-methyltransferase compare
HSERO_RS21375 -0.9 -1.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS15545 -0.9 -2.7 membrane protein compare
HSERO_RS08430 -0.9 -2.5 diguanylate cyclase compare
HSERO_RS10805 -0.9 -1.0 succinyldiaminopimelate aminotransferase compare
HSERO_RS00815 -0.8 -1.1 sulfurtransferase compare
HSERO_RS03285 -0.8 -1.2 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS13315 -0.8 -0.9 ferredoxin compare
HSERO_RS08640 -0.8 -0.9 hypothetical protein compare
HSERO_RS00220 -0.8 -0.9 hypothetical protein compare
HSERO_RS06655 -0.8 -1.2 hypothetical protein compare
HSERO_RS20985 -0.8 -1.1 serine acetyltransferase compare
HSERO_RS02160 -0.8 -0.9 DNA-dependent helicase compare
HSERO_RS01375 -0.8 -2.7 hypothetical protein compare
HSERO_RS04270 -0.8 -3.4 membrane protein compare
HSERO_RS20600 -0.8 -3.4 transcription regulator protein compare
HSERO_RS03270 -0.8 -3.5 protein RecA compare
HSERO_RS18975 -0.8 -1.6 hypothetical protein compare
HSERO_RS09660 -0.8 -1.2 ribonuclease III compare
HSERO_RS05620 -0.8 -1.2 dehydratase compare
HSERO_RS19995 -0.8 -0.8 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS15040 -0.8 -3.3 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS09775 -0.8 -1.6 cobalamin synthase compare
HSERO_RS09435 -0.8 -1.4 S-adenosylmethionine-dependent methyltransferase compare
HSERO_RS10960 -0.8 -3.4 PEP synthetase regulatory protein compare
HSERO_RS04240 -0.8 -2.8 C4-dicarboxylate ABC transporter compare
HSERO_RS10410 -0.8 -2.3 alkyl hydroperoxide reductase compare
HSERO_RS20135 -0.7 -1.5 type VI secretion protein compare
HSERO_RS09260 -0.7 -1.3 hypothetical protein compare
HSERO_RS14950 -0.7 -1.6 purine-binding chemotaxis protein compare
HSERO_RS13280 -0.7 -1.7 precorrin-4 C11-methyltransferase compare
HSERO_RS14835 -0.7 -2.5 peptidase M23 compare
HSERO_RS08115 -0.7 -1.0 acyl-CoA-binding protein compare
HSERO_RS13295 -0.7 -2.9 membrane protein compare
HSERO_RS18365 -0.7 -2.3 hypothetical protein compare
HSERO_RS21445 -0.7 -0.9 lipid A biosynthesis acyltransferase compare
HSERO_RS04190 -0.7 -2.8 DNA mismatch repair protein compare
HSERO_RS05125 -0.7 -1.9 DeoR family transcripitonal regulator compare
HSERO_RS19970 -0.7 -1.5 branched-chain amino acid ABC transporter compare
HSERO_RS16485 -0.7 -2.4 tRNA pseudouridine synthase A compare
HSERO_RS22935 -0.7 -1.8 metallothio multi-domain protein compare
HSERO_RS07755 -0.7 -1.8 glutamate racemase compare
HSERO_RS21580 -0.7 -3.1 membrane protein conserved
HSERO_RS22065 -0.7 -1.7 EpiA compare
HSERO_RS12360 -0.7 -1.5 hypothetical protein compare
HSERO_RS02260 -0.7 -1.7 DNA polymerase I compare
HSERO_RS21540 -0.7 -1.7 alkyl hydroperoxide reductase subunit C compare
HSERO_RS14935 -0.7 -2.3 hypothetical protein compare
HSERO_RS03145 -0.7 -4.5 poly(A) polymerase compare
HSERO_RS14025 -0.7 -2.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS21040 -0.7 -2.6 3-oxoacyl-ACP synthase compare
HSERO_RS10750 -0.7 -2.1 hypothetical protein compare
HSERO_RS05630 -0.7 -1.0 AsnC family transcriptional regulator compare
HSERO_RS15180 -0.7 -3.1 transcription-repair coupling factor compare
HSERO_RS14190 -0.6 -2.1 iron--sulfur cluster insertion protein ErpA compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Sodium nitrate in Herbaspirillum seropedicae SmR1

For nitrogen source Sodium nitrate across organisms