Experiment set3IT016 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Isoleucine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS05860 -7.1 -4.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS19005 -6.6 -4.5 3-dehydroquinate synthase compare
RR42_RS01385 -5.8 -3.4 5,10-methylenetetrahydrofolate reductase compare
RR42_RS16255 -5.7 -8.7 sulfate adenylyltransferase compare
RR42_RS06485 -5.7 -7.7 chorismate synthase compare
RR42_RS14365 -5.6 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS14390 -5.4 -5.2 3-isopropylmalate dehydratase compare
RR42_RS14400 -5.4 -5.2 isopropylmalate isomerase compare
RR42_RS30655 -5.3 -7.3 LysR family transcriptional regulator compare
RR42_RS11795 -5.2 -4.3 PEP synthetase regulatory protein compare
RR42_RS18305 -5.0 -5.5 anthranilate phosphoribosyltransferase compare
RR42_RS16250 -5.0 -8.9 sulfate adenylyltransferase compare
RR42_RS15905 -4.8 -12.0 phosphoenolpyruvate carboxylase compare
RR42_RS14320 -4.7 -6.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS01290 -4.6 -9.3 thiamine biosynthesis protein ThiC compare
RR42_RS16265 -4.6 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS04475 -4.5 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS33255 -4.5 -5.3 protein-tyrosine phosphatase compare
RR42_RS01160 -4.3 -9.1 homoserine O-acetyltransferase compare
RR42_RS18300 -4.2 -5.0 anthranilate synthase subunit II compare
RR42_RS12040 -4.2 -12.6 MFS transporter compare
RR42_RS14385 -4.0 -7.1 3-isopropylmalate dehydrogenase compare
RR42_RS33260 -3.9 -9.4 multidrug MFS transporter compare
RR42_RS01845 -3.9 -2.2 glycerol-3-phosphate dehydrogenase compare
RR42_RS16245 -3.8 -5.4 uroporphyrin-III methyltransferase compare
RR42_RS33250 -3.6 -8.8 tyrosine protein kinase compare
RR42_RS00115 -3.6 -3.5 hypothetical protein compare
RR42_RS12980 -3.6 -7.7 chemotaxis protein CheY compare
RR42_RS18295 -3.5 -12.0 anthranilate synthase component I compare
RR42_RS30660 -3.5 -8.7 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS26900 -3.3 -3.1 enoyl-CoA hydratase compare
RR42_RS16270 -3.3 -9.3 sulfite reductase compare
RR42_RS14360 -3.3 -1.6 tryptophan synthase subunit alpha compare
RR42_RS16965 -3.2 -6.4 ABC transporter compare
RR42_RS16275 -3.2 -5.1 membrane protein compare
RR42_RS11790 -3.1 -5.9 phosphoenolpyruvate synthase compare
RR42_RS04535 -3.1 -7.6 cysteine synthase compare
RR42_RS16280 -3.1 -6.4 transcriptional regulator compare
RR42_RS17105 -2.8 -11.6 Clp protease ClpX compare
RR42_RS04460 -2.8 -5.0 chorismate mutase compare
RR42_RS16960 -2.8 -7.8 ABC transporter ATP-binding protein compare
RR42_RS21040 -2.7 -1.5 hypothetical protein compare
RR42_RS18855 -2.7 -4.9 preprotein translocase compare
RR42_RS16980 -2.7 -14.5 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS18990 -2.7 -16.0 glutamate synthase compare
RR42_RS02085 -2.7 -7.3 RNA polymerase subunit sigma-54 compare
RR42_RS33245 -2.6 -10.9 mannose-1-phosphate guanyltransferase compare
RR42_RS18850 -2.6 -3.4 preprotein translocase subunit TatC compare
RR42_RS02705 -2.6 -3.2 Holliday junction DNA helicase RuvA compare
RR42_RS16240 -2.6 -1.3 cobalamin biosynthesis protein CbiX compare
RR42_RS15890 -2.5 -6.4 heme biosynthesis protein HemY compare
RR42_RS12985 -2.5 -6.4 histidine kinase compare
RR42_RS15895 -2.5 -7.7 uroporphyrinogen III methyltransferase compare
RR42_RS21220 -2.4 -3.0 iron transporter FeoB compare
RR42_RS33240 -2.4 -12.4 GDP-L-fucose synthase compare
RR42_RS05990 -2.3 -7.3 aromatic amino acid aminotransferase compare
RR42_RS21295 -2.3 -2.4 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS11885 -2.3 -8.9 (protein-PII) uridylyltransferase compare
RR42_RS20205 -2.3 -3.4 chromosome partitioning protein compare
RR42_RS18985 -2.3 -5.6 glutamate synthase compare
RR42_RS16970 -2.3 -9.9 ABC transporter ATP-binding protein compare
RR42_RS17645 -2.3 -4.6 shikimate dehydrogenase compare
RR42_RS07605 -2.2 -6.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS06095 -2.2 -6.2 hypothetical protein compare
RR42_RS16975 -2.2 -6.4 ABC transporter permease compare
RR42_RS01780 -2.2 -7.8 glutathione synthetase compare
RR42_RS10855 -2.1 -1.8 diguanylate phosphodiesterase compare
RR42_RS01775 -2.1 -6.1 glutamate--cysteine ligase compare
RR42_RS33575 -2.1 -3.2 hypothetical protein compare
RR42_RS16260 -2.0 -1.2 phosphoadenosine phosphosulfate reductase compare
RR42_RS10345 -2.0 -8.0 amino acid dehydrogenase compare
RR42_RS14790 -2.0 -8.0 cobalamin biosynthesis protein CobD compare
RR42_RS33235 -2.0 -6.6 GDP-mannose 4,6-dehydratase compare
RR42_RS13265 -1.9 -5.5 GntR family transcriptional regulator compare
RR42_RS19010 -1.9 -5.0 shikimate kinase compare
RR42_RS03080 -1.9 -2.6 recombinase RecA compare
RR42_RS10355 -1.9 -4.1 AsnC family transcriptional regulator compare
RR42_RS17390 -1.9 -7.2 ATP-dependent DNA helicase RecG compare
RR42_RS21300 -1.8 -4.3 GntR family transcriptional regulator compare
RR42_RS33210 -1.8 -5.7 teichoic acid biosynthesis protein compare
RR42_RS07360 -1.8 -2.6 ATPase compare
RR42_RS14965 -1.8 -5.0 hypothetical protein compare
RR42_RS03035 -1.8 -1.6 membrane protein compare
RR42_RS24605 -1.8 -6.1 TetR family transcriptional regulator compare
RR42_RS26905 -1.7 -7.7 methylcrotonoyl-CoA carboxylase compare
RR42_RS33355 -1.6 -4.5 membrane protein compare
RR42_RS00940 -1.6 -6.8 biotin synthase compare
RR42_RS01380 -1.5 -1.6 membrane protein compare
RR42_RS18310 -1.5 -1.4 indole-3-glycerol-phosphate synthase compare
RR42_RS16220 -1.5 -1.4 DNA polymerase III subunit chi compare
RR42_RS04895 -1.5 -7.8 serine/threonine protein phosphatase compare
RR42_RS12925 -1.5 -2.6 ATPase compare
RR42_RS12015 -1.5 -2.2 dihydrolipoamide acyltransferase compare
RR42_RS26895 -1.5 -6.0 3-methylcrotonyl-CoA carboxylase compare
RR42_RS37110 -1.5 -2.3 hypothetical protein compare
RR42_RS02320 -1.4 -3.3 trehalose phosphatase compare
RR42_RS21435 -1.4 -2.4 hypothetical protein compare
RR42_RS18815 -1.4 -5.7 cytochrome C compare
RR42_RS02500 -1.4 -1.4 TetR family transcriptional regulator compare
RR42_RS05465 -1.4 -8.2 2-isopropylmalate synthase compare
RR42_RS00955 -1.4 -4.9 hydroxymethylglutaryl-CoA lyase compare
RR42_RS09555 -1.4 -2.1 universal stress protein UspA compare
RR42_RS21290 -1.3 -4.3 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS02045 -1.3 -8.5 GTPase compare
RR42_RS25890 -1.3 -5.7 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) conserved
RR42_RS04470 -1.3 -3.2 prephenate dehydrogenase compare
RR42_RS13625 -1.3 -2.4 4-hydroxybenzoyl-CoA reductase compare
RR42_RS24510 -1.3 -1.5 hypothetical protein compare
RR42_RS28720 -1.3 -2.5 hypothetical protein compare
RR42_RS18825 -1.3 -4.1 ubiquinol-cytochrome C reductase compare
RR42_RS25510 -1.2 -2.2 short-chain dehydrogenase compare
RR42_RS07555 -1.2 -2.0 potassium transporter Kup compare
RR42_RS21280 -1.2 -5.1 L-lactate permease compare
RR42_RS20195 -1.2 -1.2 ATPase F0F1 compare
RR42_RS13195 -1.2 -4.3 protein-L-isoaspartate O-methyltransferase compare
RR42_RS17060 -1.2 -8.9 histidine kinase compare
RR42_RS06630 -1.2 -2.3 integration host factor subunit alpha compare
RR42_RS30640 -1.2 -4.9 DNA mismatch repair protein MutT compare
RR42_RS11255 -1.2 -6.4 Fis family transcriptional regulator compare
RR42_RS15640 -1.2 -1.4 hypothetical protein compare
RR42_RS19410 -1.1 -4.9 GntR family transcriptional regulator compare
RR42_RS03940 -1.1 -2.1 membrane protein compare
RR42_RS05500 -1.1 -0.8 preprotein translocase subunit SecG compare
RR42_RS33860 -1.1 -1.5 3-demethylubiquinone-9 3-methyltransferase compare
RR42_RS12615 -1.1 -2.3 LexA family transcriptional regulator compare
RR42_RS06460 -1.1 -3.5 alpha/beta hydrolase compare
RR42_RS10350 -1.1 -4.8 indolepyruvate ferredoxin oxidoreductase compare
RR42_RS21285 -1.1 -3.8 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS09760 -1.1 -1.8 hypothetical protein compare
RR42_RS12550 -1.1 -3.1 hypothetical protein compare
RR42_RS02210 -1.1 -1.2 succinate dehydrogenase compare
RR42_RS03020 -1.1 -1.6 MarR family transcriptional regulator compare
RR42_RS11275 -1.1 -4.2 3-methylitaconate isomerase compare
RR42_RS18820 -1.1 -4.5 cytochrome B compare
RR42_RS21720 -1.0 -1.2 acetoin catabolism protein X compare
RR42_RS04180 -1.0 -1.8 methyltransferase compare
RR42_RS01720 -1.0 -1.9 membrane protein compare
RR42_RS32975 -1.0 -1.8 LysR family transcriptional regulator compare
RR42_RS06015 -1.0 -7.6 recombinase compare
RR42_RS21595 -1.0 -2.4 IclR family transcriptional regulator compare
RR42_RS08220 -1.0 -1.7 hypothetical protein compare
RR42_RS14395 -1.0 -1.2 entericidin compare
RR42_RS17110 -1.0 -4.8 ATP-dependent Clp protease adapter protein ClpS compare
RR42_RS02850 -1.0 -2.3 phoH-like protein compare
RR42_RS35110 -1.0 -1.7 hypothetical protein compare
RR42_RS11270 -1.0 -6.1 aconitate hydratase compare
RR42_RS12520 -1.0 -2.5 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS20310 -1.0 -1.0 copper-binding protein compare
RR42_RS28850 -1.0 -2.6 transcriptional regulator compare
RR42_RS08575 -0.9 -1.1 tail protein compare
RR42_RS00885 -0.9 -3.4 acetyl-CoA acetyltransferase compare
RR42_RS24980 -0.9 -1.2 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS23685 -0.9 -5.4 transcriptional regulator compare
RR42_RS00900 -0.9 -2.0 2-hydroxychromene-2-carboxylate isomerase compare
RR42_RS01505 -0.9 -1.5 tRNA-Cys compare
RR42_RS15875 -0.9 -2.3 hypothetical protein compare
RR42_RS11655 -0.9 -1.6 heat-shock protein Hsp20 compare
RR42_RS05305 -0.9 -2.5 NADP oxidoreductase compare
RR42_RS16195 -0.9 -1.6 haloacid dehalogenase compare
RR42_RS00715 -0.9 -2.0 ferritin compare
RR42_RS04205 -0.9 -2.0 glycine cleavage system regulatory protein compare
RR42_RS33475 -0.9 -2.9 CopG family transcriptional regulator compare
RR42_RS23110 -0.9 -1.1 isochorismatase compare
RR42_RS10920 -0.9 -1.3 hypothetical protein compare
RR42_RS23420 -0.9 -2.1 3-oxoacyl-ACP reductase compare
RR42_RS00925 -0.9 -3.8 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS15410 -0.9 -3.0 membrane protein compare
RR42_RS07115 -0.8 -0.7 hypothetical protein compare
RR42_RS23460 -0.8 -1.6 alpha/beta hydrolase compare
RR42_RS30310 -0.8 -1.2 signal transduction protein compare
RR42_RS13800 -0.8 -4.3 formyltetrahydrofolate deformylase compare
RR42_RS28445 -0.8 -2.4 ABC transporter substrate-binding protein compare
RR42_RS34395 -0.8 -1.2 hypothetical protein compare
RR42_RS00725 -0.8 -2.1 hypothetical protein compare
RR42_RS03005 -0.8 -1.2 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS07920 -0.8 -1.4 cyclophilin-like superfamily protein compare
RR42_RS18430 -0.8 -2.0 prevent-host-death protein compare
RR42_RS00645 -0.8 -2.5 allophanate hydrolase compare
RR42_RS03565 -0.8 -2.1 hypothetical protein compare
RR42_RS17055 -0.8 -4.2 LuxR family transcriptional regulator compare
RR42_RS34650 -0.8 -2.6 LacI family transcriptional regulator compare
RR42_RS12050 -0.8 -4.1 DNA polymerase compare
RR42_RS29865 -0.8 -1.9 hypothetical protein compare
RR42_RS33650 -0.8 -2.1 IclR family transcriptional regulator compare
RR42_RS28140 -0.8 -3.1 hypothetical protein compare
RR42_RS35875 -0.8 -4.6 UDP-galactose-4-epimerase compare
RR42_RS33600 -0.8 -1.0 oxidoreductase compare
RR42_RS26715 -0.8 -2.4 sulfonate ABC transporter substrate-binding protein compare
RR42_RS07620 -0.8 -2.4 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS03395 -0.8 -2.2 membrane protein compare
RR42_RS16765 -0.8 -1.8 glycerol kinase compare
RR42_RS05375 -0.8 -2.5 hemoglobin-like protein compare
RR42_RS01915 -0.8 -2.9 cytochrome C oxidase subunit I compare
RR42_RS15475 -0.8 -3.3 protein tolQ compare
RR42_RS14075 -0.8 -3.3 anti-sigma factor compare
RR42_RS23035 -0.8 -2.4 sporulation protein compare
RR42_RS24490 -0.7 -1.7 hypothetical protein compare
RR42_RS14885 -0.7 -1.1 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS01045 -0.7 -1.6 Fur family transcriptional regulator compare
RR42_RS24040 -0.7 -3.1 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Isoleucine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Isoleucine across organisms