Experiment set3IT016 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Isoleucine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS20775 +1.8 2.0 hypothetical protein compare
RR42_RS05425 +1.6 6.5 membrane protein compare
RR42_RS12085 +1.4 4.6 glyoxalase compare
RR42_RS26455 +1.3 1.7 amino acid ABC transporter ATP-binding protein compare
RR42_RS17235 +1.3 6.4 poly(A) polymerase compare
RR42_RS08210 +1.3 1.5 hypothetical protein compare
RR42_RS36400 +1.3 1.9 hypothetical protein compare
RR42_RS00600 +1.3 0.6 DeoR family transcriptional regulator compare
RR42_RS21755 +1.2 2.9 shikimate dehydrogenase compare
RR42_RS15245 +1.2 3.1 alpha/beta hydrolase compare
RR42_RS31330 +1.2 1.5 LysR family transcriptional regulator compare
RR42_RS08945 +1.1 1.5 hypothetical protein compare
RR42_RS18385 +1.1 2.2 hypothetical protein compare
RR42_RS08465 +1.1 2.3 hypothetical protein compare
RR42_RS28695 +1.0 2.0 hypothetical protein compare
RR42_RS30765 +1.0 1.6 tRNA-Arg compare
RR42_RS25455 +1.0 1.6 acetyl-CoA acetyltransferase compare
RR42_RS18380 +1.0 2.2 hypothetical protein compare
RR42_RS09375 +0.9 1.2 taurine dioxygenase compare
RR42_RS26265 +0.9 1.5 hypothetical protein compare
RR42_RS34060 +0.9 2.0 alpha/beta hydrolase compare
RR42_RS28290 +0.9 4.1 DNA-binding protein compare
RR42_RS05420 +0.9 4.9 membrane protein compare
RR42_RS09590 +0.9 1.5 hypothetical protein compare
RR42_RS01750 +0.9 7.3 hypothetical protein compare
RR42_RS02030 +0.9 2.8 membrane protein compare
RR42_RS13865 +0.9 1.0 hypothetical protein compare
RR42_RS13065 +0.9 5.7 ribonuclease R compare
RR42_RS32830 +0.8 2.0 hypothetical protein compare
RR42_RS09565 +0.8 1.7 hypothetical protein compare
RR42_RS20855 +0.8 4.0 cold-shock protein compare
RR42_RS22845 +0.8 2.1 cell envelope biogenesis protein OmpA compare
RR42_RS36795 +0.8 1.9 fumarate hydratase compare
RR42_RS31495 +0.8 1.4 Cro/Cl family transcriptional regulator compare
RR42_RS01450 +0.8 3.5 hypothetical protein compare
RR42_RS06000 +0.8 1.1 antibiotic biosynthesis monooxygenase compare
RR42_RS17565 +0.8 5.4 LysR family transcriptional regulator compare
RR42_RS34570 +0.8 1.3 hypothetical protein compare
RR42_RS30965 +0.8 2.8 hypothetical protein compare
RR42_RS37115 +0.8 1.7 hypothetical protein compare
RR42_RS16495 +0.8 2.1 branched-chain amino acid aminotransferase compare
RR42_RS02545 +0.8 1.8 nitrate ABC transporter ATP-binding protein compare
RR42_RS14235 +0.7 1.2 hypothetical protein compare
RR42_RS05385 +0.7 1.8 LOG family protein compare
RR42_RS15795 +0.7 3.8 spore coat protein compare
RR42_RS32960 +0.7 1.4 2-dehydropantoate 2-reductase compare
RR42_RS35995 +0.7 2.7 membrane protein compare
RR42_RS12130 +0.7 1.8 hypothetical protein compare
RR42_RS01485 +0.7 1.4 phosphonate transporter compare
RR42_RS32735 +0.7 1.7 3-methylcrotonyl-CoA carboxylase compare
RR42_RS05810 +0.7 0.9 RNA polymerase sigma factor compare
RR42_RS08260 +0.7 1.2 hypothetical protein compare
RR42_RS21455 +0.7 2.0 transposase compare
RR42_RS10465 +0.7 1.2 hypothetical protein compare
RR42_RS09835 +0.7 1.4 chemotaxis protein compare
RR42_RS02590 +0.7 1.9 amino acid ABC transporter ATP-binding protein compare
RR42_RS07125 +0.7 0.6 hypothetical protein compare
RR42_RS24520 +0.7 1.5 hypothetical protein compare
RR42_RS23350 +0.7 3.4 flagellar biosynthesis protein FliR compare
RR42_RS05755 +0.7 1.1 enoyl-CoA hydratase compare
RR42_RS21690 +0.7 0.8 acetyltransferase compare
RR42_RS23220 +0.7 2.1 MarR family transcriptional regulator compare
RR42_RS22535 +0.7 1.9 ArsR family transcriptional regulator compare
RR42_RS35900 +0.7 4.2 hypothetical protein compare
RR42_RS34535 +0.7 1.8 membrane protein compare
RR42_RS17230 +0.7 2.5 phosphoserine phosphatase compare
RR42_RS02470 +0.7 2.0 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS05115 +0.7 1.7 LysR family transcriptional regulator compare
RR42_RS03635 +0.7 2.1 trypsin-like serine protease compare
RR42_RS24915 +0.7 2.1 hypothetical protein compare
RR42_RS00345 +0.7 1.5 LysR family transcriptional regulator compare
RR42_RS26535 +0.7 1.9 diguanylate cyclase compare
RR42_RS27885 +0.7 2.6 2-keto-4-pentenoate hydratase compare
RR42_RS26925 +0.7 1.4 membrane protein compare
RR42_RS08450 +0.7 1.0 hypothetical protein compare
RR42_RS23305 +0.7 1.0 hypothetical protein compare
RR42_RS27245 +0.6 2.3 hypothetical protein compare
RR42_RS23970 +0.6 2.0 hypothetical protein compare
RR42_RS18140 +0.6 1.0 MarR family transcriptional regulator compare
RR42_RS14915 +0.6 2.0 hypothetical protein compare
RR42_RS34520 +0.6 0.9 transposase compare
RR42_RS15750 +0.6 3.0 hypothetical protein compare
RR42_RS01285 +0.6 2.7 acyl-CoA dehydrogenase compare
RR42_RS32670 +0.6 0.7 phenol hydroxylase compare
RR42_RS14045 +0.6 2.0 membrane protein compare
RR42_RS15985 +0.6 2.4 formate dehydrogenase compare
RR42_RS16925 +0.6 2.0 histidine utilization repressor compare
RR42_RS06785 +0.6 1.4 hypothetical protein compare
RR42_RS32050 +0.6 0.9 AraC family transcriptional regulator compare
RR42_RS20570 +0.6 1.4 biopolymer transporter ExbD compare
RR42_RS15740 +0.6 1.8 hypothetical protein compare
RR42_RS31790 +0.6 0.6 nitrite reductase compare
RR42_RS23140 +0.6 0.8 peptidylprolyl isomerase compare
RR42_RS35600 +0.6 1.5 hypothetical protein compare
RR42_RS05260 +0.6 2.0 purine permease compare
RR42_RS08860 +0.6 1.5 radical SAM protein compare
RR42_RS04055 +0.6 1.8 hypothetical protein compare
RR42_RS26640 +0.6 1.5 2-keto-3-deoxy-L-rhamnonate aldolase compare
RR42_RS15205 +0.6 1.4 pyridoxamine 5'-phosphate oxidase compare
RR42_RS25965 +0.6 2.1 LuxR family transcriptional regulator compare
RR42_RS35725 +0.6 1.5 flagellar biosynthesis protein FlgB compare
RR42_RS13450 +0.6 3.8 PhoU family transcriptional regulator compare
RR42_RS07900 +0.6 1.9 allantoate amidohydrolase compare
RR42_RS26885 +0.6 2.1 peptidase M20 compare
RR42_RS36820 +0.6 2.1 poly(3-hydroxybutyrate) depolymerase compare
RR42_RS08470 +0.6 0.9 hypothetical protein compare
RR42_RS23355 +0.6 1.2 flagellar biosynthetic protein FliQ compare
RR42_RS16510 +0.6 1.0 hypothetical protein compare
RR42_RS32645 +0.6 1.0 2-keto-4-pentenoate hydratase compare
RR42_RS14985 +0.6 1.0 30S ribosomal protein S21 compare
RR42_RS02540 +0.6 2.1 taurine ABC transporter permease compare
RR42_RS32090 +0.6 0.8 hypothetical protein compare
RR42_RS35140 +0.6 1.2 2-hydroxylaminobenzoate mutase compare
RR42_RS32720 +0.6 2.2 glyoxalase compare
RR42_RS00440 +0.6 0.9 hypothetical protein compare
RR42_RS10515 +0.6 1.8 fumarylacetoacetate hydrolase compare
RR42_RS05700 +0.6 2.6 hypothetical protein compare
RR42_RS19785 +0.6 1.6 allantoate amidohydrolase compare
RR42_RS07000 +0.6 2.8 hypothetical protein compare
RR42_RS34605 +0.6 1.5 hypothetical protein compare
RR42_RS28065 +0.6 1.3 ribose-phosphate pyrophosphokinase compare
RR42_RS15135 +0.6 2.2 LysR family transcriptional regulator compare
RR42_RS09165 +0.6 1.8 transcriptional regulator compare
RR42_RS13740 +0.6 3.1 isochorismatase compare
RR42_RS12240 +0.5 0.8 hypothetical protein compare
RR42_RS04710 +0.5 1.2 50S rRNA methyltransferase compare
RR42_RS15765 +0.5 3.0 hypothetical protein compare
RR42_RS37055 +0.5 1.1 hypothetical protein compare
RR42_RS05620 +0.5 1.6 esterase compare
RR42_RS11280 +0.5 1.0 phenylacetic acid degradation protein compare
RR42_RS13595 +0.5 1.2 hypothetical protein compare
RR42_RS30685 +0.5 2.7 hypothetical protein compare
RR42_RS33690 +0.5 1.0 phosphate acetyltransferase compare
RR42_RS24215 +0.5 1.8 hypothetical protein compare
RR42_RS27060 +0.5 0.7 cation transporter compare
RR42_RS19940 +0.5 1.9 heat-shock protein HtpX compare
RR42_RS14930 +0.5 1.8 biopolymer transporter ExbD compare
RR42_RS20825 +0.5 2.1 addiction module antitoxin compare
RR42_RS13515 +0.5 1.9 membrane protein compare
RR42_RS31695 +0.5 1.7 hypothetical protein compare
RR42_RS05935 +0.5 2.3 membrane protein compare
RR42_RS06470 +0.5 1.4 hypothetical protein compare
RR42_RS35440 +0.5 2.3 MBL fold metallo-hydrolase compare
RR42_RS04060 +0.5 0.9 hypothetical protein compare
RR42_RS31775 +0.5 2.0 HxlR family transcriptional regulator compare
RR42_RS13830 +0.5 0.8 hypothetical protein compare
RR42_RS15770 +0.5 2.3 hypothetical protein compare
RR42_RS03640 +0.5 1.8 hypothetical protein compare
RR42_RS26565 +0.5 2.9 5'-3' exonuclease compare
RR42_RS05075 +0.5 2.5 aminocarboxymuconate-semialdehyde decarboxylase compare
RR42_RS36445 +0.5 2.0 acetyl-CoA acetyltransferase compare
RR42_RS05125 +0.5 1.4 malonic semialdehyde reductase compare
RR42_RS35195 +0.5 2.4 2,5-diketo-D-gluconic acid reductase compare
RR42_RS25030 +0.5 0.9 ABC transporter permease compare
RR42_RS21175 +0.5 1.3 transporter compare
RR42_RS13945 +0.5 1.6 hypothetical protein compare
RR42_RS29020 +0.5 1.5 hypothetical protein compare
RR42_RS32800 +0.5 1.3 nucleotidyltransferase compare
RR42_RS07030 +0.5 2.2 hypothetical protein compare
RR42_RS19465 +0.5 3.4 AsnC family transcriptional regulator compare
RR42_RS13150 +0.5 1.8 pilus assembly protein PilW compare
RR42_RS15495 +0.5 1.7 hypothetical protein compare
RR42_RS29490 +0.5 1.2 toxin HipA compare
RR42_RS22100 +0.5 1.5 type VI secretion protein VasK compare
RR42_RS06545 +0.5 0.5 thioesterase compare
RR42_RS12580 +0.5 0.9 phosphate transport regulator compare
RR42_RS36610 +0.5 1.3 host specificity protein compare
RR42_RS15745 +0.5 3.2 group1 glycosyl transferase compare
RR42_RS13745 +0.5 1.9 LysR family transcriptional regulator compare
RR42_RS34905 +0.5 1.3 enoyl-CoA hydratase compare
RR42_RS13905 +0.5 1.7 fumarate hydratase compare
RR42_RS08795 +0.5 1.7 molybdopterin-guanine dinucleotide biosynthesis protein B compare
RR42_RS31995 +0.5 1.5 flavin reductase compare
RR42_RS35980 +0.5 1.7 membrane protein compare
RR42_RS09245 +0.5 0.9 hypothetical protein compare
RR42_RS17590 +0.5 0.9 16S rRNA methyltransferase compare
RR42_RS08040 +0.5 1.2 hypothetical protein compare
RR42_RS08425 +0.5 0.9 hypothetical protein compare
RR42_RS23880 +0.5 0.6 hypothetical protein compare
RR42_RS04810 +0.5 0.9 glycine/betaine ABC transporter permease compare
RR42_RS09880 +0.5 2.2 glucosamine--fructose-6-phosphate aminotransferase compare
RR42_RS21370 +0.5 1.6 4-aminobutyrate aminotransferase compare
RR42_RS05005 +0.5 1.4 NAD(FAD)-utilizing dehydrogenase compare
RR42_RS25670 +0.5 2.2 hypothetical protein compare
RR42_RS08925 +0.5 1.9 nitrate reductase compare
RR42_RS21125 +0.5 0.9 membrane protein compare
RR42_RS06720 +0.5 1.7 hypothetical protein compare
RR42_RS36845 +0.5 2.7 hypothetical protein compare
RR42_RS22180 +0.5 1.0 hypothetical protein compare
RR42_RS31035 +0.5 1.5 CDP-alcohol phosphatidyltransferase compare
RR42_RS24830 +0.5 1.6 3-oxoacyl-ACP reductase compare
RR42_RS26275 +0.4 1.4 CopG family transcriptional regulator compare
RR42_RS27080 +0.4 0.9 hypothetical protein compare
RR42_RS23565 +0.4 0.5 flagellar motor switch protein G compare
RR42_RS36760 +0.4 2.2 hypothetical protein compare
RR42_RS08905 +0.4 1.5 XRE family transcriptional regulator compare
RR42_RS36560 +0.4 1.5 ABC transporter substrate-binding protein compare
RR42_RS13145 +0.4 0.7 DNA-binding protein compare
RR42_RS03485 +0.4 1.2 type VI secretion protein compare
RR42_RS28270 +0.4 1.1 TetR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Isoleucine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Isoleucine across organisms