Experiment set3IT016 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 7; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -5.2 -3.6 NUDIX domain-containing protein compare
ABZR87_RS14115 -5.1 -3.5 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS08630 -4.2 -4.1 dihydroorotase compare
ABZR87_RS08695 -4.2 -11.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS20785 -3.9 -1.8 DUF2783 domain-containing protein compare
ABZR87_RS13400 -3.9 -1.7 hypothetical protein compare
ABZR87_RS11330 -3.9 -3.8 transcriptional repressor LexA compare
ABZR87_RS02145 -3.5 -2.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS13645 -3.4 -1.5 hypothetical protein compare
ABZR87_RS06400 -3.4 -9.8 response regulator transcription factor compare
ABZR87_RS05100 -3.4 -2.3 RNA polymerase-binding protein DksA compare
ABZR87_RS01450 -3.3 -3.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS02640 -3.2 -10.8 diaminopimelate decarboxylase compare
ABZR87_RS11980 -3.2 -1.4 cold-shock protein compare
ABZR87_RS02590 -3.1 -6.0 3-dehydroquinate synthase compare
ABZR87_RS22920 -3.0 -4.1 phosphogluconate dehydratase compare
ABZR87_RS09465 -2.9 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS01225 -2.8 -2.8 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS08990 -2.8 -3.9 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS13790 -2.8 -6.2 chorismate synthase compare
ABZR87_RS02160 -2.7 -5.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS16720 -2.6 -1.8 collagen-like triple helix repeat-containing protein compare
ABZR87_RS14500 -2.6 -9.0 tryptophan synthase subunit beta compare
ABZR87_RS21365 -2.6 -1.6 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS05305 -2.5 -8.0 TetR family transcriptional regulator compare
ABZR87_RS02155 -2.5 -6.3 anthranilate phosphoribosyltransferase compare
ABZR87_RS08205 -2.5 -1.6 hypothetical protein compare
ABZR87_RS07355 -2.5 -6.2 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS08970 -2.4 -3.7 protein TolQ compare
ABZR87_RS01255 -2.4 -10.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS08795 -2.4 -1.6 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS14535 -2.4 -3.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS10170 -2.4 -3.6 RseA family anti-sigma factor compare
ABZR87_RS02655 -2.3 -6.8 anti-sigma factor compare
ABZR87_RS08640 -2.3 -4.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS18695 -2.3 -7.5 sugar-binding transcriptional regulator compare
ABZR87_RS12150 -2.3 -2.2 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS14965 -2.2 -2.2 DUF3619 family protein compare
ABZR87_RS08980 -2.2 -2.7 cell envelope integrity protein TolA compare
ABZR87_RS08985 -2.2 -6.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS00435 -2.2 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS12965 -2.2 -2.4 tail protein X compare
ABZR87_RS02595 -2.1 -8.4 shikimate kinase compare
ABZR87_RS03780 -2.1 -1.9 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS11180 -2.1 -3.5 fumarate/nitrate reduction transcriptional regulator Fnr compare
ABZR87_RS02075 -2.1 -2.0 23S ribosomal RNA compare
ABZR87_RS06405 -2.1 -1.3 hypothetical protein compare
ABZR87_RS13475 -2.0 -3.9 PAS domain S-box protein compare
ABZR87_RS04945 -2.0 -1.4 DUF4390 domain-containing protein compare
ABZR87_RS04880 -2.0 -6.9 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS15715 -2.0 -6.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS14190 -2.0 -7.9 DUF2589 domain-containing protein compare
ABZR87_RS07005 -1.9 -1.3 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS07380 -1.9 -9.2 FAD/FMN-binding oxidoreductase compare
ABZR87_RS19485 -1.9 -2.1 H-NS histone family protein compare
ABZR87_RS21950 -1.9 -7.1 hypothetical protein compare
ABZR87_RS05200 -1.9 -10.9 homoserine O-acetyltransferase compare
ABZR87_RS10980 -1.9 -1.1 tRNA-Leu compare
ABZR87_RS09445 -1.9 -6.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS20880 -1.9 -6.0 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS23035 -1.9 -2.0 PIG-L family deacetylase compare
ABZR87_RS06350 -1.8 -7.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS20155 -1.8 -3.9 type VI secretion system-associated protein TagF compare
ABZR87_RS14540 -1.8 -4.3 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS01685 -1.8 -4.3 histone H1-like DNA-binding protein compare
ABZR87_RS04975 -1.8 -1.7 peptide deformylase compare
ABZR87_RS09895 -1.8 -1.2 DUF1841 family protein compare
ABZR87_RS07510 -1.8 -2.9 LysR family transcriptional regulator compare
ABZR87_RS16170 -1.8 -1.2 argininosuccinate lyase compare
ABZR87_RS02545 -1.7 -3.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS07050 -1.7 -1.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS23315 -1.7 -4.4 MarR family transcriptional regulator compare
ABZR87_RS02140 -1.7 -10.2 anthranilate synthase component I compare
ABZR87_RS16055 -1.7 -4.7 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS14530 -1.7 -4.3 3-isopropylmalate dehydrogenase compare
ABZR87_RS14510 -1.7 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS12145 -1.7 -2.5 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS13290 -1.7 -1.7 3-ketoacyl-ACP reductase compare
ABZR87_RS17310 -1.7 -4.4 PadR family transcriptional regulator compare
ABZR87_RS02565 -1.6 -3.5 glutamate synthase subunit beta compare
ABZR87_RS17145 -1.6 -8.3 AMP nucleosidase compare
ABZR87_RS06845 -1.6 -6.1 heme o synthase compare
ABZR87_RS22970 -1.6 -6.6 cystathionine gamma-synthase family protein compare
ABZR87_RS07360 -1.6 -6.2 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS10195 -1.6 -1.9 signal peptidase I compare
ABZR87_RS08400 -1.6 -1.9 glycine zipper 2TM domain-containing protein compare
ABZR87_RS01280 -1.6 -3.5 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS11245 -1.6 -3.0 translational GTPase TypA compare
ABZR87_RS13250 -1.6 -2.1 phosphoserine phosphatase SerB compare
ABZR87_RS03850 -1.6 -3.5 ureidoglycolate lyase compare
ABZR87_RS21940 -1.6 -1.0 hypothetical protein compare
ABZR87_RS02375 -1.6 -5.5 cytochrome c1 compare
ABZR87_RS06705 -1.5 -7.6 glutamate--cysteine ligase compare
ABZR87_RS02570 -1.5 -11.1 glutamate synthase-related protein compare
ABZR87_RS21735 -1.5 -1.5 DUF2917 domain-containing protein compare
ABZR87_RS03435 -1.5 -5.4 type II secretion system protein GspL compare
ABZR87_RS03425 -1.5 -5.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS14490 -1.5 -5.1 tryptophan synthase subunit alpha compare
ABZR87_RS02535 -1.5 -2.1 phospholipid-binding protein MlaC compare
ABZR87_RS10550 -1.5 -1.0 outer membrane protein assembly factor BamC compare
ABZR87_RS02550 -1.5 -2.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS09625 -1.5 -6.2 CobD/CbiB family protein compare
ABZR87_RS01645 -1.5 -3.3 type II 3-dehydroquinate dehydratase compare
ABZR87_RS11125 -1.5 -3.4 cell division protein ZapE compare
ABZR87_RS06970 -1.5 -3.4 YfhL family 4Fe-4S dicluster ferredoxin compare
ABZR87_RS07055 -1.5 -5.5 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS16960 -1.5 -1.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS18080 -1.5 -2.2 hypothetical protein compare
ABZR87_RS03460 -1.5 -7.3 type II secretion system inner membrane protein GspF compare
ABZR87_RS02380 -1.4 -6.2 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS07290 -1.4 -1.8 DUF6691 family protein compare
ABZR87_RS00360 -1.4 -1.4 acyl-CoA desaturase compare
ABZR87_RS00625 -1.4 -1.4 hypothetical protein compare
ABZR87_RS21245 -1.4 -1.1 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS20555 -1.4 -3.4 helix-turn-helix transcriptional regulator compare
ABZR87_RS02440 -1.4 -4.2 twin-arginine translocase subunit TatC compare
ABZR87_RS16125 -1.4 -4.4 heme biosynthesis protein HemY compare
ABZR87_RS12955 -1.4 -2.9 terminase endonuclease subunit compare
ABZR87_RS19305 -1.4 -1.4 SctK family type III secretion system sorting platform protein compare
ABZR87_RS17730 -1.4 -4.6 GntR family transcriptional regulator compare
ABZR87_RS07965 -1.4 -2.1 recombinase RecA compare
ABZR87_RS10900 -1.4 -3.3 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS02220 -1.3 -4.8 redox-regulated ATPase YchF compare
ABZR87_RS22690 -1.3 -2.2 XRE family transcriptional regulator compare
ABZR87_RS14380 -1.3 -3.7 glutamate racemase compare
ABZR87_RS10175 -1.3 -3.4 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS12785 -1.3 -2.0 endopeptidase La compare
ABZR87_RS06385 -1.3 -6.1 CHASE3 domain-containing protein compare
ABZR87_RS04780 -1.3 -2.2 nitronate monooxygenase family protein compare
ABZR87_RS04865 -1.3 -1.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02850 -1.3 -0.9 elongation factor Tu compare
ABZR87_RS14010 -1.3 -1.3 avidin/streptavidin family protein compare
ABZR87_RS09650 -1.3 -5.4 molybdopterin adenylyltransferase compare
ABZR87_RS12970 -1.3 -2.5 putative holin compare
ABZR87_RS03455 -1.2 -5.9 type II secretion system ATPase GspE compare
ABZR87_RS12950 -1.2 -3.7 phage major capsid protein, P2 family compare
ABZR87_RS10955 -1.2 -4.4 protease modulator HflC compare
ABZR87_RS12660 -1.2 -2.1 ABC transporter permease compare
ABZR87_RS11755 -1.2 -1.5 arsenate reductase compare
ABZR87_RS01615 -1.2 -0.7 RNB domain-containing ribonuclease compare
ABZR87_RS01110 -1.2 -5.5 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS03450 -1.2 -7.1 type II secretion system secretin GspD compare
ABZR87_RS02630 -1.2 -2.6 iron donor protein CyaY compare
ABZR87_RS14505 -1.2 -2.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS06745 -1.2 -2.0 S41 family peptidase compare
ABZR87_RS10620 -1.2 -1.9 serine O-acetyltransferase compare
ABZR87_RS13285 -1.2 -6.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS09450 -1.2 -3.4 prephenate dehydratase compare
ABZR87_RS01085 -1.2 -2.8 rhombosortase compare
ABZR87_RS11440 -1.2 -4.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS06695 -1.2 -3.0 P-II family nitrogen regulator compare
ABZR87_RS13300 -1.2 -2.5 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS00340 -1.1 -1.5 50S ribosomal protein L33 compare
ABZR87_RS08665 -1.1 -4.4 GNAT family N-acetyltransferase compare
ABZR87_RS02680 -1.1 -5.2 c-type cytochrome compare
ABZR87_RS11185 -1.1 -5.2 sulfite exporter TauE/SafE family protein compare
ABZR87_RS05060 -1.1 -2.4 DUF484 family protein compare
ABZR87_RS21470 -1.1 -1.3 P-II family nitrogen regulator compare
ABZR87_RS06760 -1.1 -4.1 glutaredoxin 3 compare
ABZR87_RS09000 -1.1 -4.0 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS14605 -1.1 -6.8 aconitate hydratase AcnA compare
ABZR87_RS15405 -1.1 -2.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS04235 -1.1 -4.6 heavy metal translocating P-type ATPase compare
ABZR87_RS12780 -1.1 -0.8 HU family DNA-binding protein compare
ABZR87_RS06250 -1.1 -2.7 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS23215 -1.1 -4.2 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS01275 -1.1 -3.6 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS08670 -1.1 -5.1 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS16400 -1.1 -2.2 LysR family transcriptional regulator compare
ABZR87_RS11495 -1.1 -1.3 NADPH-dependent FMN reductase compare
ABZR87_RS15325 -1.1 -3.4 5-oxoprolinase subunit PxpA compare
ABZR87_RS06710 -1.1 -7.5 glutathione synthase compare
ABZR87_RS14195 -1.1 -4.5 DUF2589 domain-containing protein compare
ABZR87_RS07035 -1.1 -2.7 RNase adapter RapZ compare
ABZR87_RS11150 -1.1 -3.5 cytochrome-c oxidase, cbb3-type subunit II compare
ABZR87_RS06715 -1.1 -2.4 PTS sugar transporter subunit IIA compare
ABZR87_RS17910 -1.1 -5.3 IclR family transcriptional regulator compare
ABZR87_RS19675 -1.1 -0.9 cold-shock protein compare
ABZR87_RS01605 -1.1 -4.0 shikimate dehydrogenase compare
ABZR87_RS14375 -1.1 -1.4 fumarate hydratase compare
ABZR87_RS03430 -1.1 -5.5 type II secretion system minor pseudopilin GspK compare
ABZR87_RS00005 -1.1 -1.8 hypothetical protein compare
ABZR87_RS09460 -1.0 -2.8 prephenate dehydrogenase compare
ABZR87_RS08700 -1.0 -2.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS07470 -1.0 -2.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS21615 -1.0 -2.1 response regulator compare
ABZR87_RS12945 -1.0 -1.7 GPO family capsid scaffolding protein compare
ABZR87_RS16130 -1.0 -3.7 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS10085 -1.0 -1.0 Rne/Rng family ribonuclease compare
ABZR87_RS20875 -1.0 -3.6 LysR family transcriptional regulator compare
ABZR87_RS04270 -1.0 -2.6 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS12665 -1.0 -0.8 ABC transporter ATP-binding protein compare
ABZR87_RS20675 -1.0 -2.4 cupin domain-containing protein compare
ABZR87_RS02555 -1.0 -2.4 ABC transporter ATP-binding protein compare
ABZR87_RS03445 -1.0 -3.1 type II secretion system protein N compare
ABZR87_RS22125 -1.0 -2.6 GNAT family protein compare
ABZR87_RS09535 -1.0 -2.4 methionine ABC transporter permease compare
ABZR87_RS02540 -1.0 -2.4 VacJ family lipoprotein compare
ABZR87_RS21815 -1.0 -0.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS03415 -1.0 -5.3 GspH/FimT family pseudopilin compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in rhizosphere experiments