Experiment set3IT015 for Pseudomonas fluorescens FW300-N2C3

Compare to:

KB-half, Pseudo5 supernatant

200 most important genes:

  gene name fitness t score description  
AO356_20475 -2.5 -3.4 hypothetical protein compare
AO356_29315 -2.5 -2.0 acyl-CoA dehydrogenase compare
AO356_21275 -2.1 -1.7 peptidase compare
AO356_01750 -2.0 -4.4 ATP-dependent Clp protease proteolytic subunit compare
AO356_18805 -1.8 -1.1 magnesium transporter compare
AO356_25830 -1.8 -1.4 DNA repair protein compare
AO356_17075 -1.7 -2.8 cytochrome C compare
AO356_05995 -1.7 -2.0 hypothetical protein compare
AO356_25505 -1.7 -1.9 hypothetical protein compare
AO356_13395 -1.6 -1.8 non-canonical purine NTP pyrophosphatase compare
AO356_26350 -1.6 -2.0 acetyl-CoA acetyltransferase compare
AO356_27595 -1.6 -2.3 amino acid ABC transporter substrate-binding protein compare
AO356_02105 -1.6 -2.1 hypothetical protein compare
AO356_17070 -1.6 -2.6 cytochrome B compare
AO356_11610 -1.5 -1.0 glycerol acyltransferase compare
AO356_13425 -1.5 -1.0 hypothetical protein compare
AO356_01875 -1.5 -1.0 Cro/Cl family transcriptional regulator compare
AO356_17065 -1.5 -1.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_08875 -1.5 -2.2 toluene tolerance protein compare
AO356_15325 -1.5 -1.7 hypothetical protein compare
AO356_22405 -1.5 -2.0 hypothetical protein compare
AO356_28440 -1.5 -1.5 galactose 1-dehydrogenase compare
AO356_22770 -1.4 -3.7 hypothetical protein compare
AO356_15200 -1.4 -5.2 hypothetical protein compare
AO356_22680 -1.4 -1.1 chemotaxis protein CheY compare
AO356_12640 -1.4 -1.1 cytochrome C compare
AO356_19765 -1.4 -3.6 helicase compare
AO356_25840 -1.3 -1.9 peptidylprolyl isomerase compare
AO356_27365 -1.3 -2.7 nitrile hydratase subunit beta compare
AO356_16955 -1.3 -4.1 disulfide bond formation protein B compare
AO356_29515 -1.3 -1.0 energy transducer TonB compare
AO356_28430 -1.3 -1.4 hypothetical protein compare
AO356_08385 -1.3 -1.7 urease subunit beta compare
AO356_04025 -1.3 -1.2 hypothetical protein compare
AO356_06325 -1.3 -1.0 plasmid stabilization protein ParE compare
AO356_09065 -1.3 -1.9 hypothetical protein compare
AO356_15420 -1.2 -3.7 hypothetical protein compare
AO356_14135 -1.2 -4.9 biotin synthase compare
AO356_03775 -1.2 -0.6 flagellar assembly protein FliO compare
AO356_03350 -1.2 -5.3 glycosyl transferase compare
AO356_05735 -1.2 -0.6 hypothetical protein compare
AO356_11340 -1.2 -1.4 NADH-flavin reductase compare
AO356_25090 -1.2 -1.5 hypothetical protein compare
AO356_23265 -1.2 -2.7 cation:proton antiporter compare
AO356_27180 -1.2 -3.1 hypothetical protein compare
AO356_20630 -1.2 -2.2 Presumed portal vertex protein compare
AO356_20800 -1.2 -0.9 hypothetical protein compare
AO356_27790 -1.2 -2.0 N-acetylglucosamine-6-sulfatase compare
AO356_09490 -1.2 -2.3 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO356_07075 -1.1 -2.0 aspartate ammonia-lyase compare
AO356_27215 -1.1 -3.0 hypothetical protein compare
AO356_18860 -1.1 -1.9 hypothetical protein compare
AO356_12520 -1.1 -1.0 orotate phosphoribosyltransferase compare
AO356_02745 -1.1 -2.3 transcriptional regulator compare
AO356_29935 -1.1 -2.2 NADPH:quinone oxidoreductase compare
AO356_17890 -1.1 -1.4 H-NS histone compare
AO356_04275 -1.1 -0.8 3-oxoacyl-ACP synthase compare
AO356_25980 -1.1 -2.3 autotransporter subunit beta compare
AO356_16615 -1.1 -2.3 hypothetical protein compare
AO356_02430 -1.1 -2.4 cytochrome C oxidase Cbb3 compare
AO356_04445 -1.1 -1.8 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO356_08670 -1.1 -0.9 N-acetylmuramoyl-L-alanine amidase compare
AO356_04270 -1.1 -3.3 RNA polymerase subunit sigma-24 compare
AO356_28330 -1.0 -1.2 secretion protein HlyD compare
AO356_27965 -1.0 -0.9 benzaldehyde dehydrogenase compare
AO356_15275 -1.0 -3.0 ATP-dependent protease compare
AO356_26195 -1.0 -1.6 TetR family transcriptional regulator compare
AO356_13345 -1.0 -1.8 cell division ATP-binding protein FtsE compare
AO356_24215 -1.0 -2.1 chemotaxis protein CheC compare
AO356_26280 -1.0 -2.0 RNA polymerase subunit sigma compare
AO356_24725 -1.0 -1.1 alkylhydroperoxidase compare
AO356_02205 -1.0 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_12545 -1.0 -2.4 hypothetical protein compare
AO356_01270 -1.0 -3.6 (Fe-S)-binding protein compare
AO356_04160 -1.0 -2.2 hypothetical protein compare
AO356_03665 -1.0 -1.4 flagellar hook-length control protein FliK compare
AO356_26730 -1.0 -1.8 cupin compare
AO356_14540 -1.0 -2.0 biotin--protein ligase compare
AO356_22815 -1.0 -1.9 lactoylglutathione lyase compare
AO356_09210 -1.0 -1.7 3-oxoacyl-ACP synthase compare
AO356_29125 -1.0 -1.4 vanillate monooxygenase compare
AO356_28000 -1.0 -1.7 Rrf2 family transcriptional regulator compare
AO356_09185 -1.0 -0.4 hypothetical protein compare
AO356_27915 -0.9 -0.6 salicylaldehyde dehydrogenase compare
AO356_05060 -0.9 -1.5 gluconokinase compare
AO356_02460 -0.9 -0.9 hypothetical protein compare
AO356_24710 -0.9 -1.7 cupin compare
AO356_24925 -0.9 -2.2 ABC transporter permease compare
AO356_00880 -0.9 -1.6 integration host factor subunit alpha compare
AO356_22980 -0.9 -1.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO356_18775 -0.9 -1.8 aspartate kinase compare
AO356_12300 -0.9 -1.7 type VI secretion protein compare
AO356_09455 -0.9 -0.9 ATP-dependent protease subunit HslV compare
AO356_03375 -0.9 -1.6 ExsB family protein compare
AO356_14020 -0.9 -1.4 hypothetical protein compare
AO356_09195 -0.9 -2.1 FAD-dependent oxidoreductase compare
AO356_23500 -0.9 -3.6 TetR family transcriptional regulator compare
AO356_21950 -0.9 -2.8 transcriptional regulator compare
AO356_29105 -0.9 -1.1 fumarylacetoacetate hydrolase compare
AO356_04085 -0.9 -2.0 hypothetical protein compare
AO356_23445 -0.9 -2.9 hypothetical protein compare
AO356_02125 -0.9 -1.5 hypothetical protein compare
AO356_27210 -0.9 -4.4 hypothetical protein compare
AO356_15515 -0.9 -1.2 DNA polymerase III subunit epsilon compare
AO356_00970 -0.9 -2.9 LacI family transcriptional regulator compare
AO356_28370 -0.9 -1.7 ABC transporter ATP-binding protein compare
AO356_01095 -0.9 -0.9 glycolate oxidase compare
AO356_06100 -0.9 -1.3 hypothetical protein compare
AO356_19565 -0.9 -1.2 hypothetical protein compare
AO356_21125 -0.9 -0.9 cyclic peptide transporter compare
AO356_27925 -0.8 -1.0 MarR family transcriptional regulator compare
AO356_15860 -0.8 -1.0 general secretion pathway protein GspH compare
AO356_25895 -0.8 -3.0 NADH pyrophosphatase compare
AO356_12745 -0.8 -2.7 iron donor protein CyaY compare
AO356_13475 -0.8 -2.7 glutathione synthetase compare
AO356_21560 -0.8 -1.5 hypothetical protein compare
AO356_24650 -0.8 -1.4 BatB protein compare
AO356_29190 -0.8 -1.3 3-demethylubiquinone-9 3-methyltransferase compare
AO356_29115 -0.8 -1.0 Vanillate O-demethylase oxidoreductase compare
AO356_04055 -0.8 -1.1 hypothetical protein compare
AO356_13485 -0.8 -1.2 chemotaxis protein CheY compare
AO356_28480 -0.8 -2.3 hypothetical protein compare
AO356_18855 -0.8 -1.1 hypothetical protein compare
AO356_29165 -0.8 -1.9 glyoxalase compare
AO356_28285 -0.8 -2.1 2-polyprenyl-6-methoxyphenol hydroxylase compare
AO356_03725 -0.8 -1.1 histidine kinase compare
AO356_01030 -0.8 -2.0 hemolysin D compare
AO356_03385 -0.8 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_02305 -0.8 -1.3 hypothetical protein compare
AO356_21765 -0.8 -1.1 GntR family transcriptional regulator compare
AO356_21685 -0.8 -0.9 hypothetical protein compare
AO356_25715 -0.8 -0.8 branched-chain amino acid ABC transporter substrate-binding protein compare
AO356_02315 -0.8 -1.8 DNA topoisomerase I compare
AO356_24940 -0.8 -1.4 AraC family transcriptional regulator compare
AO356_25145 -0.8 -0.9 pyridoxine 5'-phosphate oxidase compare
AO356_26245 -0.8 -0.9 energy transducer TonB compare
AO356_25215 -0.8 -1.8 nitrate reductase compare
AO356_13565 -0.8 -2.0 16S rRNA methyltransferase compare
AO356_05550 -0.8 -1.7 DNA base-flipping protein YbaZ compare
AO356_21080 -0.8 -1.3 sugar dehydrogenase compare
AO356_25390 -0.8 -1.0 enamine deaminase RidA compare
AO356_26360 -0.8 -0.9 enoyl-CoA hydratase compare
AO356_15435 -0.8 -1.5 hydrogenase compare
AO356_26285 -0.8 -0.8 sugar ABC transporter substrate-binding protein compare
AO356_22440 -0.8 -3.9 LysR family transcriptional regulator compare
AO356_30325 -0.8 -2.4 3-oxoacyl-ACP reductase compare
AO356_01570 -0.8 -2.6 hydroxymethylglutaryl-CoA lyase compare
AO356_25520 -0.7 -0.8 3-oxoacyl-ACP reductase compare
AO356_14380 -0.7 -1.5 transcriptional regulator compare
AO356_28505 -0.7 -1.5 sugar ABC transporter substrate-binding protein compare
AO356_08800 -0.7 -3.4 hypothetical protein compare
AO356_18780 -0.7 -0.9 carbon storage regulator compare
AO356_25405 -0.7 -2.2 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_23945 -0.7 -1.5 hypothetical protein compare
AO356_17575 -0.7 -1.0 hypothetical protein compare
AO356_09755 -0.7 -2.5 preprotein translocase subunit SecB compare
AO356_24175 -0.7 -2.1 formate dehydrogenase compare
AO356_12730 -0.7 -1.5 hypothetical protein compare
AO356_28970 -0.7 -0.9 Fis family transcriptional regulator compare
AO356_05565 -0.7 -2.0 hypothetical protein compare
AO356_12460 -0.7 -2.3 hypothetical protein compare
AO356_21205 -0.7 -1.8 mechanosensitive ion channel protein MscS compare
AO356_13585 -0.7 -4.4 hypothetical protein compare
AO356_11735 -0.7 -1.4 XRE family transcriptional regulator compare
AO356_18330 -0.7 -2.8 hypothetical protein compare
AO356_15160 -0.7 -1.5 hypothetical protein compare
AO356_18555 -0.7 -1.4 peptidase M4 compare
AO356_03400 -0.7 -3.1 aminotransferase DegT compare
AO356_27240 -0.7 -2.2 hypothetical protein compare
AO356_02425 -0.7 -2.2 cytochrome C oxidase Cbb3 compare
AO356_09565 -0.7 -2.4 glucan biosynthesis protein G compare
AO356_21705 -0.7 -1.1 response regulator compare
AO356_27455 -0.7 -2.8 LysR family transcriptional regulator compare
AO356_22790 -0.7 -1.5 hypothetical protein compare
AO356_25985 -0.7 -2.3 autotransporter compare
AO356_03770 -0.7 -1.4 flagellar biosynthesis protein flip compare
AO356_06285 -0.7 -1.5 LysR family transcriptional regulator compare
AO356_28090 -0.7 -0.3 ABC transporter ATP-binding protein compare
AO356_20260 -0.7 -1.0 termination factor Rho compare
AO356_03885 -0.7 -3.4 beta-ketoacyl-ACP synthase compare
AO356_13490 -0.7 -1.3 protein PilI compare
AO356_06385 -0.7 -1.4 recombinase XerD compare
AO356_18065 -0.7 -1.4 7-carboxy-7-deazaguanine synthase compare
AO356_30230 -0.7 -2.8 transmembrane reductase oxidoreductase compare
AO356_14900 -0.7 -1.6 zinc-binding protein compare
AO356_29255 -0.7 -1.5 hypothetical protein compare
AO356_00560 -0.7 -1.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_24955 -0.7 -1.2 D-amino acid oxidase compare
AO356_24185 -0.7 -2.1 isochorismate-pyruvate lyase compare
AO356_20265 -0.7 -1.6 hypothetical protein compare
AO356_08160 -0.7 -1.2 translation initiation factor Sui1 compare
AO356_24865 -0.7 -1.3 Valyl-tRNA synthetase compare
AO356_21160 -0.7 -1.3 RND transporter compare
AO356_11450 -0.7 -0.9 cytochrome C compare
AO356_27405 -0.7 -1.0 MarR family transcriptional regulator compare
AO356_03365 -0.7 -2.0 UDP-N-acetylglucosamine 2-epimerase compare
AO356_26300 -0.7 -2.2 hypothetical protein compare
AO356_28745 -0.7 -1.6 MFS transporter compare
AO356_27510 -0.7 -1.9 AraC family transcriptional regulator compare
AO356_23675 -0.7 -1.1 hydroxyacid dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in stress experiments