Experiment set3IT015 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Tetracycline hydrochloride 0.0004 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1307 -3.4 -2.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3246 -3.3 -4.5 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_2105 -3.1 -3.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3833 -3.0 -10.3 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2885 -2.9 -6.7 Paraquat-inducible protein A compare
Pf1N1B4_2917 -2.7 -9.9 FIG140336: TPR domain protein compare
Pf1N1B4_2106 -2.6 -4.2 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1619 -2.6 -10.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_1469 -2.5 -14.0 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_1403 -2.3 -7.7 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2886 -2.3 -13.1 Paraquat-inducible protein B compare
Pf1N1B4_769 -2.3 -7.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1462 -2.2 -12.5 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_2884 -2.1 -6.4 Paraquat-inducible protein A compare
Pf1N1B4_2114 -2.1 -6.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_1614 -2.0 -3.5 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_4759 -2.0 -2.2 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_4040 -1.9 -3.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_5995 -1.9 -2.7 Transporter, MFS superfamily compare
Pf1N1B4_3143 -1.7 -3.7 RecA protein compare
Pf1N1B4_2706 -1.6 -2.9 FIG00954871: hypothetical protein compare
Pf1N1B4_1263 -1.5 -3.1 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_2609 -1.5 -9.7 Catalase (EC 1.11.1.6) compare
Pf1N1B4_3605 -1.5 -2.6 Flagellar motor switch protein FliG compare
Pf1N1B4_683 -1.5 -2.8 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_5275 -1.5 -2.8 hypothetical protein compare
Pf1N1B4_407 -1.4 -2.2 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_1468 -1.4 -10.1 InaA protein compare
Pf1N1B4_2568 -1.3 -2.8 Translation elongation factor Tu compare
Pf1N1B4_2005 -1.3 -1.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_289 -1.3 -9.4 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_5699 -1.3 -2.4 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_3166 -1.3 -7.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1544 -1.2 -6.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5446 -1.2 -3.3 hypothetical protein compare
Pf1N1B4_2227 -1.2 -2.4 FIG019278: hypothetical protein compare
Pf1N1B4_4990 -1.2 -2.2 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_3818 -1.2 -2.2 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_3485 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_617 -1.2 -1.4 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_1441 -1.2 -7.4 Putative esterase, FIGfam005057 compare
Pf1N1B4_3468 -1.2 -2.1 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1993 -1.2 -1.7 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_5588 -1.2 -2.2 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_389 -1.2 -4.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_493 -1.2 -2.9 hypothetical protein compare
Pf1N1B4_4818 -1.1 -1.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5624 -1.1 -2.8 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_3466 -1.1 -2.3 FIG00955605: hypothetical protein compare
Pf1N1B4_3775 -1.1 -2.0 FIG00956876: hypothetical protein compare
Pf1N1B4_3093 -1.1 -0.9 Outer membrane protein H precursor compare
Pf1N1B4_5393 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_4472 -1.1 -2.5 Transcriptional regulator, ArsR family compare
Pf1N1B4_327 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_2360 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_3525 -1.1 -1.7 hydrolase, alpha/beta fold family compare
Pf1N1B4_2684 -1.1 -1.2 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_1906 -1.1 -2.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_876 -1.1 -3.1 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_1641 -1.0 -6.3 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_2856 -1.0 -3.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_823 -1.0 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4857 -1.0 -4.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_175 -1.0 -1.9 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4636 -1.0 -1.6 TPR domain protein in aerotolerance operon compare
Pf1N1B4_2453 -1.0 -0.8 hypothetical protein compare
Pf1N1B4_5447 -1.0 -2.4 hypothetical protein compare
Pf1N1B4_3627 -1.0 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_3595 -1.0 -1.3 Flagellin protein FlaG compare
Pf1N1B4_4394 -1.0 -2.4 FIG00955080: hypothetical protein compare
Pf1N1B4_3445 -1.0 -2.5 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_1780 -1.0 -2.1 FIG00961586: hypothetical protein compare
Pf1N1B4_4552 -1.0 -3.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_1637 -1.0 -1.5 FIG00954739: hypothetical protein compare
Pf1N1B4_1838 -1.0 -2.4 FIG00955509: hypothetical protein compare
Pf1N1B4_2037 -1.0 -2.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_76 -1.0 -1.6 ATP binding protein compare
Pf1N1B4_483 -1.0 -2.3 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_3524 -0.9 -2.3 FIG00955363: hypothetical protein compare
Pf1N1B4_3017 -0.9 -3.3 NAD(FAD)-utilizing enzyme possibly involved in translation compare
Pf1N1B4_4731 -0.9 -3.0 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2853 -0.9 -1.6 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_5916 -0.9 -2.3 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_644 -0.9 -1.7 Cold shock protein CspC compare
Pf1N1B4_4028 -0.9 -2.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4533 -0.9 -1.3 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_1546 -0.9 -3.3 Thermonuclease family protein compare
Pf1N1B4_1892 -0.9 -2.7 ABC transporter ATP-binding protein USSDB6B compare
Pf1N1B4_5089 -0.9 -2.2 Exopolysaccharide production protein ExoQ compare
Pf1N1B4_3328 -0.9 -1.7 Rhodanese-like domain protein compare
Pf1N1B4_3795 -0.9 -1.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_3129 -0.9 -1.4 Prophage baseplate assembly protein V compare
Pf1N1B4_4931 -0.9 -1.8 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_4632 -0.9 -1.9 Exonuclease SbcC compare
Pf1N1B4_4156 -0.9 -1.9 putative secreted protein compare
Pf1N1B4_2401 -0.9 -1.3 Lipoprotein, putative compare
Pf1N1B4_3817 -0.9 -3.0 FIG008443: hypothetical protein compare
Pf1N1B4_2075 -0.9 -2.3 ABC-type antimicrobial peptide transport system, permease component compare
Pf1N1B4_3390 -0.9 -1.7 RNA polymerase sigma factor RpoE compare
Pf1N1B4_1734 -0.9 -3.1 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf1N1B4_2209 -0.9 -4.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4979 -0.9 -1.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_5721 -0.9 -1.8 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_3222 -0.9 -1.0 Ferredoxin compare
Pf1N1B4_4482 -0.8 -2.3 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_58 -0.8 -3.8 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_5519 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_291 -0.8 -3.1 Major outer membrane lipoprotein I compare
Pf1N1B4_127 -0.8 -2.5 FIG032225: Transcriptional regulator, LysR family compare
Pf1N1B4_1399 -0.8 -2.6 FIG003573: hypothetical protein compare
Pf1N1B4_1057 -0.8 -2.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4140 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_4317 -0.8 -1.3 DNA/RNA non-specific endonuclease compare
Pf1N1B4_980 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_2169 -0.8 -1.5 FIG00953808: hypothetical protein compare
Pf1N1B4_675 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_5779 -0.8 -2.0 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_3296 -0.8 -2.3 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_4035 -0.8 -1.6 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3454 -0.8 -3.3 Mg/Co/Ni transporter MgtE / CBS domain compare
Pf1N1B4_3388 -0.8 -5.0 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf1N1B4_1568 -0.8 -2.4 Twin-arginine translocation protein TatB compare
Pf1N1B4_1296 -0.8 -5.4 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) compare
Pf1N1B4_4195 -0.8 -2.4 Transcriptional regulator, TetR family compare
Pf1N1B4_3126 -0.8 -2.2 Phage tail length tape-measure protein compare
Pf1N1B4_1236 -0.8 -3.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3668 -0.8 -4.3 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_1317 -0.8 -1.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_3975 -0.8 -1.7 Transcriptional regulator, IclR family compare
Pf1N1B4_3279 -0.8 -1.3 putative membrane protein compare
Pf1N1B4_5383 -0.8 -5.6 hypothetical protein compare
Pf1N1B4_5112 -0.8 -2.0 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_1994 -0.8 -2.4 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf1N1B4_4460 -0.7 -0.8 Cytochrome b561 compare
Pf1N1B4_4974 -0.7 -1.5 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_1617 -0.7 -4.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2082 -0.7 -2.0 Uncharacterized protein ImpA compare
Pf1N1B4_723 -0.7 -5.0 two-component system sensor protein compare
Pf1N1B4_1837 -0.7 -1.1 Osmotically inducible protein C compare
Pf1N1B4_1294 -0.7 -1.4 VgrG protein compare
Pf1N1B4_1874 -0.7 -1.9 FIG00953549: hypothetical protein compare
Pf1N1B4_5061 -0.7 -2.0 Valyl-tRNA synthetase compare
Pf1N1B4_5133 -0.7 -2.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_3224 -0.7 -3.9 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf1N1B4_350 -0.7 -3.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_5219 -0.7 -1.5 tRNA-Gly-CCC compare
Pf1N1B4_388 -0.7 -3.1 OmpA family protein compare
Pf1N1B4_3368 -0.7 -1.2 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_5991 -0.7 -1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_1472 -0.7 -1.0 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_5045 -0.7 -1.7 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_3849 -0.7 -2.4 Transcriptional regulator, GntR family compare
Pf1N1B4_5043 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_3800 -0.7 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_2155 -0.7 -1.7 Glycine cleavage system transcriptional activator compare
Pf1N1B4_31 -0.7 -2.1 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf1N1B4_4273 -0.7 -2.7 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf1N1B4_5965 -0.7 -2.4 D-amino-acid oxidase (EC 1.4.3.3) compare
Pf1N1B4_2006 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_4358 -0.7 -1.3 Acetyltransferase, GNAT family compare
Pf1N1B4_1615 -0.7 -2.0 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_3785 -0.7 -1.3 FOG: Ankyrin repeat compare
Pf1N1B4_5078 -0.7 -1.7 Transcriptional regulator PhnF compare
Pf1N1B4_2339 -0.7 -1.2 COG1872 compare
Pf1N1B4_1234 -0.7 -1.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3812 -0.7 -4.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2335 -0.7 -2.1 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_4418 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_2432 -0.7 -1.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_4476 -0.7 -1.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_5496 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_556 -0.7 -2.4 Gluconate permease compare
Pf1N1B4_4029 -0.7 -1.8 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_826 -0.7 -2.6 tRNA (5-methoxyuridine) 34 synthase compare
Pf1N1B4_3621 -0.7 -3.1 Flagellar biosynthesis protein FlhB compare
Pf1N1B4_1695 -0.7 -0.9 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_5284 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_3625 -0.7 -1.8 Flagellar synthesis regulator FleN compare
Pf1N1B4_4814 -0.6 -1.7 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_5382 -0.6 -2.6 hypothetical protein compare
Pf1N1B4_1227 -0.6 -1.7 FIG00954870: hypothetical protein compare
Pf1N1B4_364 -0.6 -1.7 Rhodanese domain protein UPF0176 compare
Pf1N1B4_5575 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_4563 -0.6 -1.5 Sulfate transporter compare
Pf1N1B4_3372 -0.6 -1.6 FIG00962464: hypothetical protein compare
Pf1N1B4_5461 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_554 -0.6 -1.7 Putative threonine efflux protein compare
Pf1N1B4_3312 -0.6 -2.2 Tricarboxylate transport protein TctB compare
Pf1N1B4_3779 -0.6 -1.5 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_4493 -0.6 -1.7 FIG00443700: hypothetical protein compare
Pf1N1B4_3069 -0.6 -1.6 FIG00954614: hypothetical protein compare
Pf1N1B4_2550 -0.6 -2.3 Lipoate-protein ligase A compare
Pf1N1B4_1003 -0.6 -1.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2867 -0.6 -2.3 Hemin ABC transporter, permease protein compare
Pf1N1B4_4957 -0.6 -1.1 Transcriptional regulator, TetR family compare
Pf1N1B4_3356 -0.6 -0.9 Cyclic nucleotide-binding protein compare
Pf1N1B4_1279 -0.6 -1.3 Flp pilus assembly protein TadB compare
Pf1N1B4_5005 -0.6 -1.8 LysR family transcriptional regulator STM2281 compare
Pf1N1B4_1996 -0.6 -1.9 NADH:ubiquinone oxidoreductase 49 kD subunit 7 compare
Pf1N1B4_2384 -0.6 -4.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Tetracycline hydrochloride in Pseudomonas fluorescens FW300-N1B4

For stress Tetracycline hydrochloride across organisms