Experiment set3IT015 for Pantoea sp. MT58

Compare to:

Defined media, anaerobic, with FW303 groundwater

200 most important genes:

  gene name fitness t score description  
IAI47_00460 -3.8 -2.6 glutamate--ammonia ligase compare
IAI47_14945 -3.5 -4.1 pyrroline-5-carboxylate reductase compare
IAI47_12865 -3.4 -15.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_15635 -3.2 -4.1 RNA polymerase-binding protein DksA compare
IAI47_05070 -2.9 -1.2 outer membrane protein assembly factor BamB compare
IAI47_09240 -2.9 -2.8 HTH-type transcriptional regulator CysB compare
IAI47_17220 -2.8 -22.0 glutamate synthase large subunit compare
IAI47_03725 -2.8 -9.6 phosphoglycerate dehydrogenase compare
IAI47_17225 -2.7 -17.2 sulfite reductase subunit alpha compare
IAI47_13885 -2.7 -3.3 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_06235 -2.6 -8.8 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_13685 -2.6 -2.5 Tol-Pal system protein TolB compare
IAI47_17185 -2.6 -9.6 RNA polymerase factor sigma-54 compare
IAI47_07165 -2.5 -3.4 exodeoxyribonuclease I compare
IAI47_03860 -2.5 -13.0 diaminopimelate decarboxylase compare
IAI47_09580 -2.5 -3.9 FNR family transcription factor compare
IAI47_16350 -2.5 -10.3 phosphoserine phosphatase compare
IAI47_09185 -2.5 -7.0 glutamine amidotransferase compare
IAI47_01365 -2.5 -1.7 inorganic phosphate transporter PitA compare
IAI47_16005 -2.4 -13.8 3-isopropylmalate dehydrogenase compare
IAI47_10840 -2.4 -6.7 pyruvate kinase PykF compare
IAI47_01035 -2.4 -15.6 dihydroxy-acid dehydratase compare
IAI47_07060 -2.3 -10.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_09175 -2.3 -10.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00780 -2.3 -6.1 6-phosphofructokinase compare
IAI47_13770 -2.3 -13.2 citrate synthase compare
IAI47_16210 -2.3 -11.4 homoserine kinase compare
IAI47_00915 -2.3 -12.6 argininosuccinate synthase compare
IAI47_16205 -2.3 -8.5 threonine synthase compare
IAI47_17965 -2.3 -12.8 glucose-6-phosphate isomerase compare
IAI47_18830 -2.3 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_09165 -2.2 -9.5 tryptophan synthase subunit alpha compare
IAI47_16080 -2.2 -8.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_09180 -2.2 -11.5 anthranilate phosphoribosyltransferase compare
IAI47_16010 -2.2 -14.2 3-isopropylmalate dehydratase large subunit compare
IAI47_01030 -2.2 -13.5 branched-chain amino acid transaminase compare
IAI47_14350 -2.2 -7.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_00895 -2.2 -15.0 phosphoenolpyruvate carboxylase compare
IAI47_00910 -2.2 -9.9 acetylglutamate kinase compare
IAI47_01050 -2.2 -14.8 ketol-acid reductoisomerase compare
IAI47_18015 -2.2 -13.1 homoserine O-succinyltransferase compare
IAI47_01040 -2.2 -10.2 threonine ammonia-lyase, biosynthetic compare
IAI47_12885 -2.2 -10.6 pyruvate formate lyase 1-activating protein compare
IAI47_18045 -2.2 -11.3 phosphoribosylamine--glycine ligase compare
IAI47_04160 -2.2 -10.7 phosphoadenylyl-sulfate reductase compare
IAI47_16120 -2.2 -11.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_00890 -2.2 -10.9 methylenetetrahydrofolate reductase compare
IAI47_00920 -2.2 -13.3 argininosuccinate lyase compare
IAI47_00905 -2.1 -11.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_06940 -2.1 -1.5 tyrosine-protein kinase Wzc compare
IAI47_05425 -2.1 -6.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_16870 -2.1 -6.5 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_13695 -2.1 -0.8 colicin uptake protein TolR compare
IAI47_18040 -2.1 -14.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_04120 -2.1 -15.3 GTP diphosphokinase compare
IAI47_08085 -2.1 -5.6 helix-turn-helix domain-containing protein compare
IAI47_09170 -2.1 -11.4 tryptophan synthase subunit beta compare
IAI47_09190 -2.1 -10.3 anthranilate synthase component 1 compare
IAI47_07065 -2.1 -10.3 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_16830 -2.1 -11.3 ornithine carbamoyltransferase compare
IAI47_00515 -2.1 -2.8 DNA-directed RNA polymerase subunit omega compare
IAI47_07070 -2.1 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_15120 -2.1 -8.8 glutamate 5-kinase compare
IAI47_16215 -2.0 -14.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_13900 -2.0 -12.9 asparagine synthase B compare
IAI47_07090 -2.0 -9.1 histidinol dehydrogenase compare
IAI47_16115 -2.0 -14.4 carbamoyl-phosphate synthase large subunit compare
IAI47_00300 -2.0 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_16015 -2.0 -5.9 3-isopropylmalate dehydratase small subunit compare
IAI47_15115 -2.0 -10.6 glutamate-5-semialdehyde dehydrogenase compare
IAI47_10520 -2.0 -3.9 pyridoxamine 5'-phosphate oxidase compare
IAI47_07075 -2.0 -9.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_05440 -1.9 -10.2 cysteine synthase A compare
IAI47_00880 -1.9 -12.2 cystathionine gamma-synthase compare
IAI47_06395 -1.9 -2.6 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_05155 -1.9 -14.4 polyphosphate kinase 1 compare
IAI47_16000 -1.9 -13.4 2-isopropylmalate synthase compare
IAI47_05180 -1.9 -11.5 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_03820 -1.9 -4.6 site-specific tyrosine recombinase XerD compare
IAI47_17900 -1.9 -2.4 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_07080 -1.9 -8.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_06275 -1.8 -13.6 amidophosphoribosyltransferase compare
IAI47_21450 -1.8 -2.7 general stress protein compare
IAI47_05275 -1.8 -6.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_08445 -1.8 -1.5 Holliday junction branch migration protein RuvA compare
IAI47_04930 -1.8 -13.0 phosphoribosylformylglycinamidine synthase compare
IAI47_12705 -1.8 -10.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_07085 -1.8 -11.0 histidinol-phosphate transaminase compare
IAI47_03975 -1.7 -10.5 amino-acid N-acetyltransferase compare
IAI47_00600 -1.7 -10.4 orotate phosphoribosyltransferase compare
IAI47_09275 -1.7 -8.5 orotidine-5'-phosphate decarboxylase compare
IAI47_07095 -1.7 -8.1 ATP phosphoribosyltransferase compare
IAI47_12880 -1.6 -12.9 formate C-acetyltransferase compare
IAI47_04410 -1.6 -10.8 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_09210 -1.6 -7.0 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_09305 -1.6 -3.1 cyclic di-GMP phosphodiesterase compare
IAI47_16860 -1.6 -10.6 aspartate carbamoyltransferase compare
IAI47_11475 -1.6 -1.7 hypothetical protein compare
IAI47_12790 -1.6 -1.3 chromosome partition protein MukE compare
IAI47_00110 -1.5 -6.3 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_12215 -1.5 -9.5 dihydroorotase compare
IAI47_04895 -1.5 -3.3 pyridoxine 5'-phosphate synthase compare
IAI47_16390 -1.5 -1.2 tRNA-Leu compare
IAI47_12915 -1.5 -9.0 leucine-responsive transcriptional regulator Lrp compare
IAI47_06380 -1.5 -3.2 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_10835 -1.4 -1.5 tRNA-Val compare
IAI47_09055 -1.4 -9.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_02585 -1.3 -3.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_03685 -1.3 -7.1 erythrose-4-phosphate dehydrogenase compare
IAI47_10755 -1.2 -1.8 DUF1289 domain-containing protein compare
IAI47_09010 -1.2 -5.9 formyltetrahydrofolate deformylase compare
IAI47_07550 -1.2 -1.7 tRNA-Asn compare
IAI47_08450 -1.2 -2.8 Holliday junction branch migration DNA helicase RuvB compare
IAI47_13740 -1.2 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_04835 -1.2 -5.7 ATP-dependent RNA helicase SrmB compare
IAI47_15540 -1.1 -6.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_07930 -1.1 -2.2 DUF2158 domain-containing protein compare
IAI47_13140 -1.1 -6.9 molybdopterin molybdotransferase MoeA compare
IAI47_18055 -1.1 -6.3 DNA-binding protein HU-alpha compare
IAI47_00770 -1.1 -1.1 general stress protein compare
IAI47_18315 -1.1 -5.3 HTH-type transcriptional regulator MetR compare
IAI47_18530 -1.1 -1.9 thioredoxin TrxA compare
IAI47_13700 -1.1 -3.3 Tol-Pal system protein TolQ compare
IAI47_03855 -1.1 -5.7 LysR family transcriptional regulator compare
IAI47_04705 -1.1 -1.7 hypothetical protein compare
IAI47_12375 -1.1 -2.4 acyl carrier protein compare
IAI47_13840 -1.0 -2.5 replication initiation negative regulator SeqA compare
IAI47_00455 -1.0 -5.2 nitrogen regulation protein NR(II) compare
IAI47_02695 -1.0 -6.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_06325 -1.0 -4.3 acetate kinase compare
IAI47_13480 -1.0 -2.6 molybdopterin synthase sulfur carrier subunit compare
IAI47_06405 -1.0 -2.3 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_12175 -1.0 -3.4 anti-sigma-28 factor FlgM compare
IAI47_13180 -1.0 -5.1 manganese-binding transcriptional regulator MntR compare
IAI47_00410 -1.0 -7.2 molybdenum cofactor guanylyltransferase MobA compare
IAI47_13495 -1.0 -5.6 GTP 3',8-cyclase MoaA compare
IAI47_06320 -0.9 -4.7 phosphate acetyltransferase compare
IAI47_04190 -0.9 -4.3 adenylyl-sulfate kinase compare
IAI47_04155 -0.9 -6.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_21880 -0.9 -0.9 ParA family protein compare
IAI47_13145 -0.9 -4.2 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_15990 -0.9 -7.5 acetolactate synthase 3 large subunit compare
IAI47_16220 -0.9 -3.6 thr operon leader peptide compare
IAI47_04150 -0.9 -6.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_00900 -0.9 -6.6 acetylornithine deacetylase compare
IAI47_04260 -0.8 -7.1 nitrate reductase subunit beta compare
IAI47_17020 -0.8 -3.0 30S ribosome-binding factor RbfA compare
IAI47_18310 -0.8 -7.0 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_03375 -0.8 -5.2 peptide chain release factor 3 compare
IAI47_03595 -0.8 -4.4 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_15605 -0.8 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_06675 -0.8 -1.9 DUF1232 domain-containing protein compare
IAI47_01020 -0.8 -5.8 acetolactate synthase 2 catalytic subunit compare
IAI47_05580 -0.8 -0.9 membrane protein YpdK compare
IAI47_13485 -0.8 -3.8 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_12030 -0.8 -5.5 PTS glucose transporter subunit IIBC compare
IAI47_00465 -0.8 -1.6 ribosome-dependent GTPase TypA compare
IAI47_10935 -0.8 -3.6 vitamin B12 ABC transporter ATP-binding protein BtuD compare
IAI47_04270 -0.8 -5.2 respiratory nitrate reductase subunit gamma compare
IAI47_01025 -0.8 -3.9 acetolactate synthase 2 small subunit compare
IAI47_18410 -0.8 -2.9 diaminopimelate epimerase compare
IAI47_06245 -0.7 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_15985 -0.7 -3.9 acetolactate synthase small subunit compare
IAI47_15810 -0.7 -2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_06400 -0.7 -1.3 NADH-quinone oxidoreductase subunit J compare
IAI47_16095 -0.7 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_16925 -0.7 -5.9 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_12355 -0.7 -2.3 hydroxymyristoyl-ACP dehydratase compare
IAI47_12930 -0.7 -2.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_16990 -0.7 -2.7 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_04335 -0.7 -1.9 tRNA-Arg compare
IAI47_11310 -0.7 -1.8 redox-regulated ATPase YchF compare
IAI47_00710 -0.7 -5.5 glycosyltransferase compare
IAI47_08045 -0.7 -2.0 NUDIX domain-containing protein compare
IAI47_14965 -0.7 -1.8 hypothetical protein compare
IAI47_04255 -0.7 -6.0 nitrate reductase subunit alpha compare
IAI47_11420 -0.7 -0.9 hypothetical protein compare
IAI47_20850 -0.6 -2.7 TetR/AcrR family transcriptional regulator compare
IAI47_10890 -0.6 -5.6 FAD-binding oxidoreductase compare
IAI47_04425 -0.6 -3.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_00445 -0.6 -4.6 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_16190 -0.6 -2.9 molybdopterin adenylyltransferase compare
IAI47_04265 -0.6 -3.9 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_07175 -0.6 -4.5 FUSC family protein compare
IAI47_15970 -0.6 -1.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_16930 -0.6 -3.4 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_10455 -0.6 -1.7 electron transport complex subunit RsxC compare
IAI47_03100 -0.6 -5.1 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
IAI47_17560 -0.6 -0.7 ROK family transcriptional regulator compare
IAI47_04175 -0.6 -4.2 uroporphyrinogen-III C-methyltransferase compare
IAI47_07450 -0.6 -1.7 winged helix-turn-helix domain-containing protein compare
IAI47_08705 -0.6 -4.5 carboxy terminal-processing peptidase compare
IAI47_16520 -0.6 -3.8 hypothetical protein compare
IAI47_00450 -0.6 -4.6 nitrogen regulation protein NR(I) compare
IAI47_10945 -0.6 -2.4 vitamin B12 ABC transporter permease BtuC compare
IAI47_07955 -0.6 -1.3 protein DsrB compare
IAI47_17035 -0.6 -1.5 ribosome maturation factor RimP compare
IAI47_04870 -0.6 -2.7 elongation factor 4 compare
IAI47_04450 -0.6 -1.3 tRNA-Ala compare
IAI47_09395 -0.6 -2.0 phage shock protein PspA compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress FW303_groundwater across organisms