Experiment set3IT015 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Valine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -7.3 -4.9 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.9 -4.8 anthranilate phosphoribosyltransferase compare
RR42_RS19005 -6.5 -4.5 3-dehydroquinate synthase compare
RR42_RS14365 -6.4 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS14390 -6.0 -4.1 3-isopropylmalate dehydratase compare
RR42_RS14400 -5.6 -3.8 isopropylmalate isomerase compare
RR42_RS05860 -5.4 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS00955 -5.4 -6.4 hydroxymethylglutaryl-CoA lyase compare
RR42_RS33255 -5.3 -3.2 protein-tyrosine phosphatase compare
RR42_RS06485 -5.1 -9.2 chorismate synthase compare
RR42_RS04475 -5.0 -10.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS01160 -4.9 -10.7 homoserine O-acetyltransferase compare
RR42_RS12040 -4.8 -11.9 MFS transporter compare
RR42_RS16250 -4.8 -8.4 sulfate adenylyltransferase compare
RR42_RS15905 -4.6 -12.5 phosphoenolpyruvate carboxylase compare
RR42_RS16265 -4.6 -3.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS14385 -4.4 -7.2 3-isopropylmalate dehydrogenase compare
RR42_RS11790 -4.3 -10.1 phosphoenolpyruvate synthase compare
RR42_RS16270 -4.3 -10.5 sulfite reductase compare
RR42_RS16255 -4.3 -8.3 sulfate adenylyltransferase compare
RR42_RS18295 -4.3 -11.2 anthranilate synthase component I compare
RR42_RS21220 -4.1 -3.9 iron transporter FeoB compare
RR42_RS16965 -4.0 -5.5 ABC transporter compare
RR42_RS14320 -4.0 -5.2 O-succinylhomoserine sulfhydrylase compare
RR42_RS26905 -4.0 -8.7 methylcrotonoyl-CoA carboxylase compare
RR42_RS16245 -4.0 -6.0 uroporphyrin-III methyltransferase compare
RR42_RS26900 -3.9 -3.3 enoyl-CoA hydratase compare
RR42_RS01845 -3.8 -2.1 glycerol-3-phosphate dehydrogenase compare
RR42_RS33260 -3.8 -8.7 multidrug MFS transporter compare
RR42_RS04535 -3.8 -7.2 cysteine synthase compare
RR42_RS02500 -3.8 -3.2 TetR family transcriptional regulator compare
RR42_RS05465 -3.7 -13.7 2-isopropylmalate synthase compare
RR42_RS33250 -3.7 -8.8 tyrosine protein kinase compare
RR42_RS26895 -3.6 -7.0 3-methylcrotonyl-CoA carboxylase compare
RR42_RS18300 -3.5 -3.6 anthranilate synthase subunit II compare
RR42_RS01290 -3.5 -6.7 thiamine biosynthesis protein ThiC compare
RR42_RS16275 -3.5 -3.6 membrane protein compare
RR42_RS17645 -3.4 -7.1 shikimate dehydrogenase compare
RR42_RS18990 -3.4 -18.6 glutamate synthase compare
RR42_RS02085 -3.3 -7.2 RNA polymerase subunit sigma-54 compare
RR42_RS30655 -3.2 -7.1 LysR family transcriptional regulator compare
RR42_RS13265 -3.2 -6.0 GntR family transcriptional regulator compare
RR42_RS14360 -3.2 -1.6 tryptophan synthase subunit alpha compare
RR42_RS16960 -3.1 -8.4 ABC transporter ATP-binding protein compare
RR42_RS00115 -3.0 -3.3 hypothetical protein compare
RR42_RS16975 -3.0 -6.2 ABC transporter permease compare
RR42_RS16970 -3.0 -11.6 ABC transporter ATP-binding protein compare
RR42_RS30660 -3.0 -6.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS11795 -3.0 -4.1 PEP synthetase regulatory protein compare
RR42_RS12980 -3.0 -4.4 chemotaxis protein CheY compare
RR42_RS18985 -3.0 -6.8 glutamate synthase compare
RR42_RS17105 -3.0 -11.2 Clp protease ClpX compare
RR42_RS07605 -2.9 -5.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS04700 -2.9 -1.6 ribonuclease G compare
RR42_RS05990 -2.8 -7.7 aromatic amino acid aminotransferase compare
RR42_RS16280 -2.8 -4.3 transcriptional regulator compare
RR42_RS15895 -2.8 -7.3 uroporphyrinogen III methyltransferase compare
RR42_RS11885 -2.7 -10.4 (protein-PII) uridylyltransferase compare
RR42_RS33245 -2.7 -9.5 mannose-1-phosphate guanyltransferase compare
RR42_RS16980 -2.7 -14.8 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS18855 -2.6 -4.9 preprotein translocase compare
RR42_RS02705 -2.6 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS33240 -2.5 -12.1 GDP-L-fucose synthase compare
RR42_RS16240 -2.5 -1.3 cobalamin biosynthesis protein CbiX compare
RR42_RS16260 -2.4 -1.5 phosphoadenosine phosphosulfate reductase compare
RR42_RS12985 -2.4 -6.5 histidine kinase compare
RR42_RS20195 -2.4 -1.6 ATPase F0F1 compare
RR42_RS33235 -2.3 -6.9 GDP-mannose 4,6-dehydratase compare
RR42_RS15890 -2.3 -6.6 heme biosynthesis protein HemY compare
RR42_RS04460 -2.3 -3.8 chorismate mutase compare
RR42_RS11275 -2.2 -6.1 3-methylitaconate isomerase compare
RR42_RS04895 -2.1 -9.9 serine/threonine protein phosphatase compare
RR42_RS34215 -2.0 -1.3 ferredoxin compare
RR42_RS05955 -2.0 -1.3 hypothetical protein compare
RR42_RS11255 -2.0 -9.1 Fis family transcriptional regulator compare
RR42_RS21435 -2.0 -4.1 hypothetical protein compare
RR42_RS12925 -2.0 -2.1 ATPase compare
RR42_RS22590 -2.0 -1.5 organic hydroperoxide resistance protein compare
RR42_RS20205 -2.0 -3.8 chromosome partitioning protein compare
RR42_RS24605 -2.0 -6.7 TetR family transcriptional regulator compare
RR42_RS21470 -1.9 -1.5 hypothetical protein compare
RR42_RS06095 -1.9 -4.2 hypothetical protein compare
RR42_RS33355 -1.9 -3.7 membrane protein compare
RR42_RS37400 -1.9 -1.2 6-phosphogluconolactonase compare
RR42_RS19010 -1.8 -4.3 shikimate kinase compare
RR42_RS18850 -1.8 -4.1 preprotein translocase subunit TatC compare
RR42_RS15640 -1.8 -1.7 hypothetical protein compare
RR42_RS14790 -1.8 -6.6 cobalamin biosynthesis protein CobD compare
RR42_RS02045 -1.8 -10.3 GTPase compare
RR42_RS07555 -1.8 -2.3 potassium transporter Kup compare
RR42_RS28545 -1.7 -4.7 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) conserved
RR42_RS26915 -1.7 -5.1 AMP-binding protein compare
RR42_RS14585 -1.7 -4.9 L-PSP family endoribonuclease compare
RR42_RS15415 -1.7 -2.7 membrane protein compare
RR42_RS20775 -1.7 -0.9 hypothetical protein compare
RR42_RS06875 -1.7 -1.9 hypothetical protein compare
RR42_RS05920 -1.7 -3.7 HrcA family transcriptional regulator compare
RR42_RS12550 -1.7 -4.5 hypothetical protein compare
RR42_RS17060 -1.6 -11.1 histidine kinase compare
RR42_RS24040 -1.6 -5.3 hypothetical protein compare
RR42_RS15410 -1.6 -3.7 membrane protein compare
RR42_RS34650 -1.6 -4.7 LacI family transcriptional regulator compare
RR42_RS14055 -1.6 -2.7 elongation factor 4 compare
RR42_RS19085 -1.6 -2.2 cytochrome C biogenesis protein ResB compare
RR42_RS02320 -1.6 -4.2 trehalose phosphatase compare
RR42_RS11270 -1.5 -8.0 aconitate hydratase compare
RR42_RS12345 -1.5 -2.5 hypothetical protein compare
RR42_RS17390 -1.5 -4.3 ATP-dependent DNA helicase RecG compare
RR42_RS08180 -1.5 -1.4 hypothetical protein compare
RR42_RS02775 -1.5 -2.4 molecular chaperone SurA compare
RR42_RS07565 -1.5 -6.4 transcription accessory protein compare
RR42_RS13935 -1.4 -2.8 hemin transporter compare
RR42_RS36355 -1.4 -2.4 (2Fe-2S)-binding protein compare
RR42_RS15015 -1.4 -1.2 exodeoxyribonuclease VII small subunit compare
RR42_RS17055 -1.4 -4.9 LuxR family transcriptional regulator compare
RR42_RS07360 -1.4 -2.7 ATPase compare
RR42_RS33210 -1.4 -3.3 teichoic acid biosynthesis protein compare
RR42_RS05695 -1.4 -6.1 pyridoxal-5'-phosphate-dependent protein subunit beta compare
RR42_RS21290 -1.3 -5.8 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS18930 -1.3 -4.0 BolA family transcriptional regulator compare
RR42_RS05360 -1.3 -2.6 membrane protein compare
RR42_RS24980 -1.3 -1.4 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS01380 -1.3 -1.1 membrane protein compare
RR42_RS02250 -1.3 -2.3 GntR family transcriptional regulator compare
RR42_RS25650 -1.3 -1.5 hypothetical protein compare
RR42_RS11785 -1.3 -1.5 NfeD-like family protein 1 compare
RR42_RS17880 -1.3 -1.0 hypothetical protein compare
RR42_RS19065 -1.3 -6.5 transcriptional regulator compare
RR42_RS15845 -1.2 -1.7 biotin transporter BioY compare
RR42_RS14965 -1.2 -2.2 hypothetical protein compare
RR42_RS23230 -1.2 -2.3 glycerate kinase compare
RR42_RS03080 -1.2 -1.6 recombinase RecA compare
RR42_RS22850 -1.2 -4.7 amino acid dehydrogenase compare
RR42_RS07365 -1.2 -2.3 pyruvate dehydrogenase compare
RR42_RS04890 -1.2 -3.2 ribonuclease PH compare
RR42_RS09085 -1.2 -1.6 C4-dicarboxylate ABC transporter permease compare
RR42_RS21300 -1.2 -3.7 GntR family transcriptional regulator compare
RR42_RS01775 -1.2 -4.0 glutamate--cysteine ligase compare
RR42_RS07225 -1.2 -1.2 hypothetical protein compare
RR42_RS18825 -1.1 -3.3 ubiquinol-cytochrome C reductase compare
RR42_RS05890 -1.1 -6.7 glutamine-synthetase adenylyltransferase compare
RR42_RS17050 -1.1 -4.4 phosphoribosylglycinamide formyltransferase compare
RR42_RS00940 -1.1 -5.8 biotin synthase compare
RR42_RS04205 -1.1 -1.8 glycine cleavage system regulatory protein compare
RR42_RS06225 -1.1 -5.5 phosphoesterase compare
RR42_RS33695 -1.1 -2.4 membrane protein compare
RR42_RS30640 -1.1 -4.4 DNA mismatch repair protein MutT compare
RR42_RS32785 -1.1 -2.8 chemotaxis protein compare
RR42_RS18815 -1.1 -3.3 cytochrome C compare
RR42_RS00790 -1.1 -6.2 chemotaxis protein CheY compare
RR42_RS28920 -1.1 -2.2 hypothetical protein compare
RR42_RS26925 -1.1 -1.9 membrane protein compare
RR42_RS05165 -1.1 -1.4 GntR family transcriptional regulator compare
RR42_RS30630 -1.1 -5.5 AsnC family transcriptional regulator compare
RR42_RS08365 -1.1 -4.8 hypothetical protein compare
RR42_RS19540 -1.1 -7.7 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (EC 1.2.7.7) (from data) conserved
RR42_RS14625 -1.1 -2.5 formimidoylglutamase compare
RR42_RS05945 -1.0 -2.2 thioredoxin compare
RR42_RS17355 -1.0 -1.0 hypothetical protein compare
RR42_RS00725 -1.0 -2.9 hypothetical protein compare
RR42_RS15420 -1.0 -2.6 hypothetical protein compare
RR42_RS12545 -1.0 -6.0 aminotransferase compare
RR42_RS21295 -1.0 -2.7 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS05485 -1.0 -2.0 polynucleotide phosphorylase/polyadenylase compare
RR42_RS31830 -1.0 -1.5 short-chain dehydrogenase compare
RR42_RS13910 -1.0 -4.2 glutamate racemase compare
RR42_RS12185 -1.0 -1.3 LysR family transcriptional regulator compare
RR42_RS04470 -1.0 -2.0 prephenate dehydrogenase compare
RR42_RS32590 -1.0 -1.3 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS06890 -1.0 -1.1 hypothetical protein compare
RR42_RS31435 -1.0 -0.9 hypothetical protein compare
RR42_RS17940 -1.0 -1.5 gamma-glutamyl kinase compare
RR42_RS03630 -1.0 -1.0 cold-shock protein compare
RR42_RS00420 -1.0 -4.2 hypothetical protein compare
RR42_RS15475 -1.0 -3.3 protein tolQ compare
RR42_RS21285 -1.0 -3.8 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS22890 -1.0 -3.8 TetR family transcriptional regulator compare
RR42_RS18820 -1.0 -3.4 cytochrome B compare
RR42_RS12520 -1.0 -2.9 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS25640 -0.9 -1.5 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS33575 -0.9 -1.4 hypothetical protein compare
RR42_RS13620 -0.9 -1.0 ferredoxin compare
RR42_RS24930 -0.9 -0.8 AraC family transcriptional regulator compare
RR42_RS01780 -0.9 -4.1 glutathione synthetase compare
RR42_RS09580 -0.9 -0.9 hypothetical protein compare
RR42_RS23250 -0.9 -1.9 glyoxalase compare
RR42_RS14985 -0.9 -1.1 30S ribosomal protein S21 compare
RR42_RS00525 -0.9 -2.3 MarR family transcriptional regulator compare
RR42_RS30380 -0.9 -3.6 membrane protein compare
RR42_RS17510 -0.9 -5.9 chemotaxis protein CheY compare
RR42_RS31900 -0.9 -1.6 short-chain dehydrogenase compare
RR42_RS02425 -0.9 -1.7 hypothetical protein compare
RR42_RS16685 -0.9 -1.7 tRNA-Leu compare
RR42_RS06380 -0.9 -2.3 hypothetical protein compare
RR42_RS08390 -0.9 -2.6 hypothetical protein compare
RR42_RS14885 -0.9 -1.7 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS15625 -0.9 -3.4 tRNA (guanine-N7)-methyltransferase compare
RR42_RS00950 -0.9 -1.8 glyoxylate reductase compare
RR42_RS02440 -0.9 -1.7 membrane protein compare
RR42_RS04180 -0.9 -1.4 methyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Valine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Valine across organisms