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Experiment set3IT015 for
Ralstonia sp. UNC404CL21Col
Compare to:
Go
rhizosphere sample 6; outgrowth in LB
200 most important genes:
gene
name
fitness
t score
description
ABZR87
_RS21795
-5.7
-4.0
NUDIX domain-containing protein
compare
ABZR87
_RS08695
-4.8
-12.4
capsular polysaccharide biosynthesis protein CapF
compare
ABZR87
_RS08630
-4.7
-4.6
dihydroorotase
compare
ABZR87
_RS14115
-4.4
-4.2
ATP-dependent zinc metalloprotease FtsH
compare
ABZR87
_RS21815
-3.8
-1.7
MarR family winged helix-turn-helix transcriptional regulator
compare
ABZR87
_RS08990
-3.8
-3.7
peptidoglycan-associated lipoprotein Pal
compare
ABZR87
_RS14330
-3.6
-1.6
hypothetical protein
compare
ABZR87
_RS02640
-3.3
-12.2
diaminopimelate decarboxylase
compare
ABZR87
_RS13790
-3.2
-7.4
chorismate synthase
compare
ABZR87
_RS05100
-3.2
-3.8
RNA polymerase-binding protein DksA
compare
ABZR87
_RS10195
-3.1
-2.1
signal peptidase I
compare
ABZR87
_RS02590
-3.1
-7.9
3-dehydroquinate synthase
compare
ABZR87
_RS22920
-3.0
-4.9
phosphogluconate dehydratase
compare
ABZR87
_RS08795
-2.9
-2.0
undecaprenyl-diphosphate phosphatase
compare
ABZR87
_RS02550
-2.9
-2.8
lipid asymmetry maintenance ABC transporter permease subunit MlaE
compare
ABZR87
_RS09465
-2.8
-5.4
3-phosphoshikimate 1-carboxyvinyltransferase
compare
ABZR87
_RS01450
-2.8
-3.7
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
compare
ABZR87
_RS04975
-2.8
-1.9
peptide deformylase
compare
ABZR87
_RS14965
-2.8
-2.7
DUF3619 family protein
compare
ABZR87
_RS02160
-2.8
-5.6
indole-3-glycerol phosphate synthase TrpC
compare
ABZR87
_RS07510
-2.7
-3.2
LysR family transcriptional regulator
compare
ABZR87
_RS00435
-2.7
-1.9
ATP-dependent Clp protease ATP-binding subunit ClpA
compare
ABZR87
_RS10620
-2.7
-3.2
serine O-acetyltransferase
compare
ABZR87
_RS01810
-2.7
-3.4
glutamate 5-kinase
compare
ABZR87
_RS01225
-2.7
-3.2
YggS family pyridoxal phosphate-dependent enzyme
compare
ABZR87
_RS14500
-2.6
-11.1
tryptophan synthase subunit beta
compare
ABZR87
_RS02595
-2.6
-8.9
shikimate kinase
compare
ABZR87
_RS04105
-2.6
-3.9
ATP synthase subunit I
compare
ABZR87
_RS11330
-2.6
-3.9
transcriptional repressor LexA
compare
ABZR87
_RS22690
-2.6
-3.3
XRE family transcriptional regulator
compare
ABZR87
_RS12965
-2.5
-3.1
tail protein X
compare
ABZR87
_RS05305
-2.5
-9.1
TetR family transcriptional regulator
compare
ABZR87
_RS08970
-2.5
-5.8
protein TolQ
compare
ABZR87
_RS14535
-2.5
-4.4
3-isopropylmalate dehydratase small subunit
compare
ABZR87
_RS14505
-2.5
-3.6
phosphoribosylanthranilate isomerase
compare
ABZR87
_RS15715
-2.5
-7.1
UTP--glucose-1-phosphate uridylyltransferase GalU
compare
ABZR87
_RS21950
-2.4
-8.2
hypothetical protein
compare
ABZR87
_RS08985
-2.3
-8.1
Tol-Pal system beta propeller repeat protein TolB
compare
ABZR87
_RS07355
-2.3
-7.0
NADPH-dependent 7-cyano-7-deazaguanine reductase QueF
compare
ABZR87
_RS01885
-2.3
-1.6
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
compare
ABZR87
_RS08980
-2.3
-3.5
cell envelope integrity protein TolA
compare
ABZR87
_RS14190
-2.3
-12.6
DUF2589 domain-containing protein
compare
ABZR87
_RS16125
-2.3
-6.2
heme biosynthesis protein HemY
compare
ABZR87
_RS10980
-2.3
-1.4
tRNA-Leu
compare
ABZR87
_RS02565
-2.2
-5.0
glutamate synthase subunit beta
compare
ABZR87
_RS14490
-2.2
-7.1
tryptophan synthase subunit alpha
compare
ABZR87
_RS07050
-2.2
-1.5
PTS IIA-like nitrogen regulatory protein PtsN
compare
ABZR87
_RS16055
-2.2
-5.8
outer membrane lipoprotein chaperone LolA
compare
ABZR87
_RS02155
-2.2
-5.0
anthranilate phosphoribosyltransferase
compare
ABZR87
_RS20440
-2.2
-1.4
F0F1 ATP synthase subunit epsilon
compare
ABZR87
_RS13475
-2.2
-5.0
PAS domain S-box protein
compare
ABZR87
_RS03425
-2.2
-6.8
prepilin-type N-terminal cleavage/methylation domain-containing protein
compare
ABZR87
_RS14375
-2.2
-2.1
fumarate hydratase
compare
ABZR87
_RS07380
-2.1
-10.9
FAD/FMN-binding oxidoreductase
compare
ABZR87
_RS02385
-2.1
-4.5
ubiquinol-cytochrome c reductase iron-sulfur subunit
compare
ABZR87
_RS02655
-2.1
-5.9
anti-sigma factor
compare
ABZR87
_RS12785
-2.0
-2.4
endopeptidase La
compare
ABZR87
_RS09450
-2.0
-6.5
prephenate dehydratase
compare
ABZR87
_RS03460
-2.0
-9.2
type II secretion system inner membrane protein GspF
compare
ABZR87
_RS09445
-2.0
-8.0
3-phosphoserine/phosphohydroxythreonine transaminase
compare
ABZR87
_RS01685
-2.0
-6.0
histone H1-like DNA-binding protein
compare
ABZR87
_RS07360
-2.0
-8.0
threonine ammonia-lyase, biosynthetic
compare
ABZR87
_RS16170
-2.0
-1.9
argininosuccinate lyase
compare
ABZR87
_RS10900
-2.0
-4.1
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
compare
ABZR87
_RS14530
-2.0
-5.5
3-isopropylmalate dehydrogenase
compare
ABZR87
_RS03430
-1.9
-9.9
type II secretion system minor pseudopilin GspK
compare
ABZR87
_RS05200
-1.9
-11.7
homoserine O-acetyltransferase
compare
ABZR87
_RS02570
-1.9
-13.8
glutamate synthase-related protein
compare
ABZR87
_RS06705
-1.9
-9.7
glutamate--cysteine ligase
compare
ABZR87
_RS16960
-1.9
-1.9
HAMP domain-containing sensor histidine kinase
compare
ABZR87
_RS06350
-1.9
-9.1
thiol:disulfide interchange protein DsbA/DsbL
compare
ABZR87
_RS22325
-1.9
-2.0
H-NS histone family protein
compare
ABZR87
_RS03435
-1.9
-5.3
type II secretion system protein GspL
compare
ABZR87
_RS18695
-1.9
-6.8
sugar-binding transcriptional regulator
compare
ABZR87
_RS06845
-1.9
-7.6
heme o synthase
compare
ABZR87
_RS03450
-1.8
-10.3
type II secretion system secretin GspD
compare
ABZR87
_RS02140
-1.8
-11.1
anthranilate synthase component I
compare
ABZR87
_RS02545
-1.8
-4.3
outer membrane lipid asymmetry maintenance protein MlaD
compare
ABZR87
_RS13300
-1.8
-3.4
class I poly(R)-hydroxyalkanoic acid synthase
compare
ABZR87
_RS11980
-1.8
-1.1
cold-shock protein
compare
ABZR87
_RS02850
-1.8
-1.2
elongation factor Tu
compare
ABZR87
_RS03420
-1.8
-1.1
type II secretion system minor pseudopilin GspI
compare
ABZR87
_RS12775
-1.8
-4.1
tRNA-Val
compare
ABZR87
_RS04945
-1.8
-2.1
DUF4390 domain-containing protein
compare
ABZR87
_RS06745
-1.8
-2.7
S41 family peptidase
compare
ABZR87
_RS08640
-1.7
-4.5
symmetrical bis(5'-nucleosyl)-tetraphosphatase
compare
ABZR87
_RS15145
-1.7
-3.7
hypothetical protein
compare
ABZR87
_RS04865
-1.7
-2.4
methylenetetrahydrofolate reductase [NAD(P)H]
compare
ABZR87
_RS00200
-1.7
-3.5
phosphoadenylyl-sulfate reductase
compare
ABZR87
_RS02440
-1.7
-5.7
twin-arginine translocase subunit TatC
compare
ABZR87
_RS03410
-1.7
-4.1
type II secretion system major pseudopilin GspG
compare
ABZR87
_RS03455
-1.7
-7.6
type II secretion system ATPase GspE
compare
ABZR87
_RS06715
-1.7
-3.0
PTS sugar transporter subunit IIA
compare
ABZR87
_RS12970
-1.7
-2.3
putative holin
compare
ABZR87
_RS13705
-1.7
-1.5
integration host factor subunit alpha
compare
ABZR87
_RS01035
-1.7
-3.1
histidine utilization repressor
compare
ABZR87
_RS02145
-1.7
-1.1
aminodeoxychorismate/anthranilate synthase component II
compare
ABZR87
_RS17145
-1.7
-9.5
AMP nucleosidase
compare
ABZR87
_RS03440
-1.7
-6.0
type II secretion system protein GspM
compare
ABZR87
_RS01085
-1.7
-3.8
rhombosortase
compare
ABZR87
_RS01745
-1.7
-3.5
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
compare
ABZR87
_RS16185
-1.7
-1.6
dCTP deaminase
compare
ABZR87
_RS01980
-1.6
-1.1
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
compare
ABZR87
_RS02075
-1.6
-1.7
23S ribosomal RNA
compare
ABZR87
_RS05570
-1.6
-4.5
lysophospholipid acyltransferase family protein
compare
ABZR87
_RS07035
-1.6
-3.8
RNase adapter RapZ
compare
ABZR87
_RS22970
-1.6
-7.4
cystathionine gamma-synthase family protein
compare
ABZR87
_RS17695
-1.6
-2.5
helix-turn-helix transcriptional regulator
compare
ABZR87
_RS02535
-1.6
-2.8
phospholipid-binding protein MlaC
compare
ABZR87
_RS10170
-1.6
-3.6
RseA family anti-sigma factor
compare
ABZR87
_RS07055
-1.6
-7.8
ribosome-associated translation inhibitor RaiA
compare
ABZR87
_RS10085
-1.6
-1.4
Rne/Rng family ribonuclease
compare
ABZR87
_RS02375
-1.5
-6.2
cytochrome c1
compare
ABZR87
_RS17315
-1.5
-3.9
MarR family transcriptional regulator
compare
ABZR87
_RS12790
-1.5
-1.1
ATP-dependent Clp protease ATP-binding subunit ClpX
compare
ABZR87
_RS09515
-1.5
-1.5
cysteine synthase CysM
compare
ABZR87
_RS04880
-1.5
-7.0
5-formyltetrahydrofolate cyclo-ligase
compare
ABZR87
_RS02485
-1.5
-1.2
MarC family protein
compare
ABZR87
_RS01615
-1.5
-0.8
RNB domain-containing ribonuclease
compare
ABZR87
_RS16165
-1.5
-0.9
anti-sigma factor
compare
ABZR87
_RS12795
-1.5
-2.0
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
compare
ABZR87
_RS14540
-1.5
-4.4
3-isopropylmalate dehydratase large subunit
compare
ABZR87
_RS01255
-1.5
-8.9
LysR substrate-binding domain-containing protein
compare
ABZR87
_RS11970
-1.5
-1.2
hypothetical protein
compare
ABZR87
_RS11815
-1.5
-6.0
[protein-PII] uridylyltransferase
compare
ABZR87
_RS02555
-1.5
-3.6
ABC transporter ATP-binding protein
compare
ABZR87
_RS04995
-1.4
-1.4
DNA topoisomerase III
compare
ABZR87
_RS13250
-1.4
-2.1
phosphoserine phosphatase SerB
compare
ABZR87
_RS22035
-1.4
-3.9
hypothetical protein
compare
ABZR87
_RS11195
-1.4
-4.6
pseudouridine synthase
compare
ABZR87
_RS09625
-1.4
-7.3
CobD/CbiB family protein
compare
ABZR87
_RS20250
-1.4
-1.6
type VI secretion system lipoprotein TssJ
compare
ABZR87
_RS10175
-1.4
-3.6
MucB/RseB C-terminal domain-containing protein
compare
ABZR87
_RS11140
-1.4
-1.7
cbb3-type cytochrome oxidase assembly protein CcoS
compare
ABZR87
_RS14510
-1.4
-2.5
tRNA pseudouridine(38-40) synthase TruA
compare
ABZR87
_RS18975
-1.4
-1.9
entericidin A/B family lipoprotein
compare
ABZR87
_RS11435
-1.4
-1.4
Mth938-like domain-containing protein
compare
ABZR87
_RS12950
-1.4
-4.5
phage major capsid protein, P2 family
compare
ABZR87
_RS02380
-1.4
-6.6
cytochrome bc complex cytochrome b subunit
compare
ABZR87
_RS14380
-1.4
-4.6
glutamate racemase
compare
ABZR87
_RS03850
-1.4
-5.0
ureidoglycolate lyase
compare
ABZR87
_RS07965
-1.4
-3.0
recombinase RecA
compare
ABZR87
_RS11245
-1.3
-3.1
translational GTPase TypA
compare
ABZR87
_RS03265
-1.3
-2.9
high-potential iron-sulfur protein
compare
ABZR87
_RS20880
-1.3
-5.1
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
compare
ABZR87
_RS22000
-1.3
-1.6
hypothetical protein
compare
ABZR87
_RS16735
-1.3
-8.9
Fe/S-dependent 2-methylisocitrate dehydratase AcnD
compare
ABZR87
_RS04940
-1.3
-2.8
PAS domain-containing sensor histidine kinase
compare
ABZR87
_RS08700
-1.3
-3.7
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
compare
ABZR87
_RS15955
-1.3
-1.6
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
compare
ABZR87
_RS02540
-1.3
-3.2
VacJ family lipoprotein
compare
ABZR87
_RS11755
-1.3
-1.7
arsenate reductase
compare
ABZR87
_RS11440
-1.3
-4.3
pyridoxal phosphate-dependent aminotransferase
compare
ABZR87
_RS09935
-1.3
-0.9
amino acid aminotransferase
compare
ABZR87
_RS23415
-1.3
-2.6
metalloregulator ArsR/SmtB family transcription factor
compare
ABZR87
_RS09460
-1.3
-2.8
prephenate dehydrogenase
compare
ABZR87
_RS16270
-1.3
-1.1
cold-shock protein
compare
ABZR87
_RS00600
-1.3
-1.9
hypothetical protein
compare
ABZR87
_RS10550
-1.2
-0.8
outer membrane protein assembly factor BamC
compare
ABZR87
_RS00220
-1.2
-6.1
CysB family HTH-type transcriptional regulator
compare
ABZR87
_RS08665
-1.2
-4.6
GNAT family N-acetyltransferase
compare
ABZR87
_RS07625
-1.2
-0.8
Holliday junction branch migration protein RuvA
compare
ABZR87
_RS22415
-1.2
-2.0
universal stress protein
compare
ABZR87
_RS11160
-1.2
-3.3
cytochrome-c oxidase, cbb3-type subunit III
compare
ABZR87
_RS11125
-1.2
-4.0
cell division protein ZapE
compare
ABZR87
_RS04785
-1.2
-5.1
phosphomethylpyrimidine synthase ThiC
compare
ABZR87
_RS02220
-1.2
-5.0
redox-regulated ATPase YchF
compare
ABZR87
_RS06400
-1.2
-2.4
response regulator transcription factor
compare
ABZR87
_RS13290
-1.2
-3.1
3-ketoacyl-ACP reductase
compare
ABZR87
_RS13445
-1.2
-4.2
phasin family protein
compare
ABZR87
_RS03415
-1.2
-6.1
GspH/FimT family pseudopilin
compare
ABZR87
_RS14235
-1.2
-4.8
formyltetrahydrofolate deformylase
compare
ABZR87
_RS00625
-1.2
-1.4
hypothetical protein
compare
ABZR87
_RS01110
-1.2
-5.8
3-deoxy-7-phosphoheptulonate synthase AroG
compare
ABZR87
_RS04780
-1.2
-2.1
nitronate monooxygenase family protein
compare
ABZR87
_RS10190
-1.2
-3.9
translation elongation factor 4
compare
ABZR87
_RS20875
-1.2
-4.1
LysR family transcriptional regulator
compare
ABZR87
_RS07665
-1.2
-5.4
aminopeptidase P N-terminal domain-containing protein
compare
ABZR87
_RS15380
-1.2
-1.5
SDR family oxidoreductase
compare
ABZR87
_RS13285
-1.2
-5.7
polyhydroxyalkanoate synthesis repressor PhaR
compare
ABZR87
_RS05645
-1.1
-2.5
SDR family oxidoreductase
compare
ABZR87
_RS21955
-1.1
-4.5
hypothetical protein
compare
ABZR87
_RS00865
-1.1
-1.2
VTT domain-containing protein
compare
ABZR87
_RS23215
-1.1
-3.4
D-xylose ABC transporter substrate-binding protein
compare
ABZR87
_RS11010
-1.1
-1.1
oxidative damage protection protein
compare
ABZR87
_RS06710
-1.1
-8.2
glutathione synthase
compare
ABZR87
_RS11940
-1.1
-1.1
SsrA-binding protein SmpB
compare
ABZR87
_RS17310
-1.1
-4.0
PadR family transcriptional regulator
compare
ABZR87
_RS01565
-1.1
-5.4
NADP-dependent malic enzyme
compare
ABZR87
_RS12955
-1.1
-2.4
terminase endonuclease subunit
compare
ABZR87
_RS18190
-1.1
-1.4
Ivy family c-type lysozyme inhibitor
compare
ABZR87
_RS12960
-1.1
-1.1
head completion/stabilization protein
compare
ABZR87
_RS13540
-1.1
-1.5
DUF1488 family protein
compare
ABZR87
_RS04605
-1.1
-2.2
DUF2795 domain-containing protein
compare
ABZR87
_RS22915
-1.1
-5.3
glucose-6-phosphate dehydrogenase
compare
ABZR87
_RS00795
-1.1
-1.4
site-specific tyrosine recombinase XerD
compare
ABZR87
_RS00295
-1.1
-2.3
ABC transporter ATP-binding protein
compare
ABZR87
_RS08660
-1.1
-1.4
dTDP-4-dehydrorhamnose 3,5-epimerase
compare
ABZR87
_RS16070
-1.0
-2.6
Smr/MutS family protein
compare
ABZR87
_RS17340
-1.0
-1.7
MarR family transcriptional regulator
compare
Specific Phenotypes
None in this experiment
For Ralstonia sp. UNC404CL21Col in rhizosphere experiments