Experiment set3IT015 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 6; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -5.7 -4.0 NUDIX domain-containing protein compare
ABZR87_RS08695 -4.8 -12.4 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS08630 -4.7 -4.6 dihydroorotase compare
ABZR87_RS14115 -4.4 -4.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21815 -3.8 -1.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS08990 -3.8 -3.7 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS14330 -3.6 -1.6 hypothetical protein compare
ABZR87_RS02640 -3.3 -12.2 diaminopimelate decarboxylase compare
ABZR87_RS13790 -3.2 -7.4 chorismate synthase compare
ABZR87_RS05100 -3.2 -3.8 RNA polymerase-binding protein DksA compare
ABZR87_RS10195 -3.1 -2.1 signal peptidase I compare
ABZR87_RS02590 -3.1 -7.9 3-dehydroquinate synthase compare
ABZR87_RS22920 -3.0 -4.9 phosphogluconate dehydratase compare
ABZR87_RS08795 -2.9 -2.0 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS02550 -2.9 -2.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS09465 -2.8 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS01450 -2.8 -3.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS04975 -2.8 -1.9 peptide deformylase compare
ABZR87_RS14965 -2.8 -2.7 DUF3619 family protein compare
ABZR87_RS02160 -2.8 -5.6 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS07510 -2.7 -3.2 LysR family transcriptional regulator compare
ABZR87_RS00435 -2.7 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS10620 -2.7 -3.2 serine O-acetyltransferase compare
ABZR87_RS01810 -2.7 -3.4 glutamate 5-kinase compare
ABZR87_RS01225 -2.7 -3.2 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS14500 -2.6 -11.1 tryptophan synthase subunit beta compare
ABZR87_RS02595 -2.6 -8.9 shikimate kinase compare
ABZR87_RS04105 -2.6 -3.9 ATP synthase subunit I compare
ABZR87_RS11330 -2.6 -3.9 transcriptional repressor LexA compare
ABZR87_RS22690 -2.6 -3.3 XRE family transcriptional regulator compare
ABZR87_RS12965 -2.5 -3.1 tail protein X compare
ABZR87_RS05305 -2.5 -9.1 TetR family transcriptional regulator compare
ABZR87_RS08970 -2.5 -5.8 protein TolQ compare
ABZR87_RS14535 -2.5 -4.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14505 -2.5 -3.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS15715 -2.5 -7.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS21950 -2.4 -8.2 hypothetical protein compare
ABZR87_RS08985 -2.3 -8.1 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS07355 -2.3 -7.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS01885 -2.3 -1.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS08980 -2.3 -3.5 cell envelope integrity protein TolA compare
ABZR87_RS14190 -2.3 -12.6 DUF2589 domain-containing protein compare
ABZR87_RS16125 -2.3 -6.2 heme biosynthesis protein HemY compare
ABZR87_RS10980 -2.3 -1.4 tRNA-Leu compare
ABZR87_RS02565 -2.2 -5.0 glutamate synthase subunit beta compare
ABZR87_RS14490 -2.2 -7.1 tryptophan synthase subunit alpha compare
ABZR87_RS07050 -2.2 -1.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS16055 -2.2 -5.8 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS02155 -2.2 -5.0 anthranilate phosphoribosyltransferase compare
ABZR87_RS20440 -2.2 -1.4 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS13475 -2.2 -5.0 PAS domain S-box protein compare
ABZR87_RS03425 -2.2 -6.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS14375 -2.2 -2.1 fumarate hydratase compare
ABZR87_RS07380 -2.1 -10.9 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02385 -2.1 -4.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS02655 -2.1 -5.9 anti-sigma factor compare
ABZR87_RS12785 -2.0 -2.4 endopeptidase La compare
ABZR87_RS09450 -2.0 -6.5 prephenate dehydratase compare
ABZR87_RS03460 -2.0 -9.2 type II secretion system inner membrane protein GspF compare
ABZR87_RS09445 -2.0 -8.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS01685 -2.0 -6.0 histone H1-like DNA-binding protein compare
ABZR87_RS07360 -2.0 -8.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS16170 -2.0 -1.9 argininosuccinate lyase compare
ABZR87_RS10900 -2.0 -4.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS14530 -2.0 -5.5 3-isopropylmalate dehydrogenase compare
ABZR87_RS03430 -1.9 -9.9 type II secretion system minor pseudopilin GspK compare
ABZR87_RS05200 -1.9 -11.7 homoserine O-acetyltransferase compare
ABZR87_RS02570 -1.9 -13.8 glutamate synthase-related protein compare
ABZR87_RS06705 -1.9 -9.7 glutamate--cysteine ligase compare
ABZR87_RS16960 -1.9 -1.9 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS06350 -1.9 -9.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS22325 -1.9 -2.0 H-NS histone family protein compare
ABZR87_RS03435 -1.9 -5.3 type II secretion system protein GspL compare
ABZR87_RS18695 -1.9 -6.8 sugar-binding transcriptional regulator compare
ABZR87_RS06845 -1.9 -7.6 heme o synthase compare
ABZR87_RS03450 -1.8 -10.3 type II secretion system secretin GspD compare
ABZR87_RS02140 -1.8 -11.1 anthranilate synthase component I compare
ABZR87_RS02545 -1.8 -4.3 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS13300 -1.8 -3.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS11980 -1.8 -1.1 cold-shock protein compare
ABZR87_RS02850 -1.8 -1.2 elongation factor Tu compare
ABZR87_RS03420 -1.8 -1.1 type II secretion system minor pseudopilin GspI compare
ABZR87_RS12775 -1.8 -4.1 tRNA-Val compare
ABZR87_RS04945 -1.8 -2.1 DUF4390 domain-containing protein compare
ABZR87_RS06745 -1.8 -2.7 S41 family peptidase compare
ABZR87_RS08640 -1.7 -4.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS15145 -1.7 -3.7 hypothetical protein compare
ABZR87_RS04865 -1.7 -2.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00200 -1.7 -3.5 phosphoadenylyl-sulfate reductase compare
ABZR87_RS02440 -1.7 -5.7 twin-arginine translocase subunit TatC compare
ABZR87_RS03410 -1.7 -4.1 type II secretion system major pseudopilin GspG compare
ABZR87_RS03455 -1.7 -7.6 type II secretion system ATPase GspE compare
ABZR87_RS06715 -1.7 -3.0 PTS sugar transporter subunit IIA compare
ABZR87_RS12970 -1.7 -2.3 putative holin compare
ABZR87_RS13705 -1.7 -1.5 integration host factor subunit alpha compare
ABZR87_RS01035 -1.7 -3.1 histidine utilization repressor compare
ABZR87_RS02145 -1.7 -1.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS17145 -1.7 -9.5 AMP nucleosidase compare
ABZR87_RS03440 -1.7 -6.0 type II secretion system protein GspM compare
ABZR87_RS01085 -1.7 -3.8 rhombosortase compare
ABZR87_RS01745 -1.7 -3.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS16185 -1.7 -1.6 dCTP deaminase compare
ABZR87_RS01980 -1.6 -1.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS02075 -1.6 -1.7 23S ribosomal RNA compare
ABZR87_RS05570 -1.6 -4.5 lysophospholipid acyltransferase family protein compare
ABZR87_RS07035 -1.6 -3.8 RNase adapter RapZ compare
ABZR87_RS22970 -1.6 -7.4 cystathionine gamma-synthase family protein compare
ABZR87_RS17695 -1.6 -2.5 helix-turn-helix transcriptional regulator compare
ABZR87_RS02535 -1.6 -2.8 phospholipid-binding protein MlaC compare
ABZR87_RS10170 -1.6 -3.6 RseA family anti-sigma factor compare
ABZR87_RS07055 -1.6 -7.8 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS10085 -1.6 -1.4 Rne/Rng family ribonuclease compare
ABZR87_RS02375 -1.5 -6.2 cytochrome c1 compare
ABZR87_RS17315 -1.5 -3.9 MarR family transcriptional regulator compare
ABZR87_RS12790 -1.5 -1.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS09515 -1.5 -1.5 cysteine synthase CysM compare
ABZR87_RS04880 -1.5 -7.0 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS02485 -1.5 -1.2 MarC family protein compare
ABZR87_RS01615 -1.5 -0.8 RNB domain-containing ribonuclease compare
ABZR87_RS16165 -1.5 -0.9 anti-sigma factor compare
ABZR87_RS12795 -1.5 -2.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS14540 -1.5 -4.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS01255 -1.5 -8.9 LysR substrate-binding domain-containing protein compare
ABZR87_RS11970 -1.5 -1.2 hypothetical protein compare
ABZR87_RS11815 -1.5 -6.0 [protein-PII] uridylyltransferase compare
ABZR87_RS02555 -1.5 -3.6 ABC transporter ATP-binding protein compare
ABZR87_RS04995 -1.4 -1.4 DNA topoisomerase III compare
ABZR87_RS13250 -1.4 -2.1 phosphoserine phosphatase SerB compare
ABZR87_RS22035 -1.4 -3.9 hypothetical protein compare
ABZR87_RS11195 -1.4 -4.6 pseudouridine synthase compare
ABZR87_RS09625 -1.4 -7.3 CobD/CbiB family protein compare
ABZR87_RS20250 -1.4 -1.6 type VI secretion system lipoprotein TssJ compare
ABZR87_RS10175 -1.4 -3.6 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS11140 -1.4 -1.7 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR87_RS14510 -1.4 -2.5 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS18975 -1.4 -1.9 entericidin A/B family lipoprotein compare
ABZR87_RS11435 -1.4 -1.4 Mth938-like domain-containing protein compare
ABZR87_RS12950 -1.4 -4.5 phage major capsid protein, P2 family compare
ABZR87_RS02380 -1.4 -6.6 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS14380 -1.4 -4.6 glutamate racemase compare
ABZR87_RS03850 -1.4 -5.0 ureidoglycolate lyase compare
ABZR87_RS07965 -1.4 -3.0 recombinase RecA compare
ABZR87_RS11245 -1.3 -3.1 translational GTPase TypA compare
ABZR87_RS03265 -1.3 -2.9 high-potential iron-sulfur protein compare
ABZR87_RS20880 -1.3 -5.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS22000 -1.3 -1.6 hypothetical protein compare
ABZR87_RS16735 -1.3 -8.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS04940 -1.3 -2.8 PAS domain-containing sensor histidine kinase compare
ABZR87_RS08700 -1.3 -3.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS15955 -1.3 -1.6 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS02540 -1.3 -3.2 VacJ family lipoprotein compare
ABZR87_RS11755 -1.3 -1.7 arsenate reductase compare
ABZR87_RS11440 -1.3 -4.3 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09935 -1.3 -0.9 amino acid aminotransferase compare
ABZR87_RS23415 -1.3 -2.6 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS09460 -1.3 -2.8 prephenate dehydrogenase compare
ABZR87_RS16270 -1.3 -1.1 cold-shock protein compare
ABZR87_RS00600 -1.3 -1.9 hypothetical protein compare
ABZR87_RS10550 -1.2 -0.8 outer membrane protein assembly factor BamC compare
ABZR87_RS00220 -1.2 -6.1 CysB family HTH-type transcriptional regulator compare
ABZR87_RS08665 -1.2 -4.6 GNAT family N-acetyltransferase compare
ABZR87_RS07625 -1.2 -0.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS22415 -1.2 -2.0 universal stress protein compare
ABZR87_RS11160 -1.2 -3.3 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR87_RS11125 -1.2 -4.0 cell division protein ZapE compare
ABZR87_RS04785 -1.2 -5.1 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS02220 -1.2 -5.0 redox-regulated ATPase YchF compare
ABZR87_RS06400 -1.2 -2.4 response regulator transcription factor compare
ABZR87_RS13290 -1.2 -3.1 3-ketoacyl-ACP reductase compare
ABZR87_RS13445 -1.2 -4.2 phasin family protein compare
ABZR87_RS03415 -1.2 -6.1 GspH/FimT family pseudopilin compare
ABZR87_RS14235 -1.2 -4.8 formyltetrahydrofolate deformylase compare
ABZR87_RS00625 -1.2 -1.4 hypothetical protein compare
ABZR87_RS01110 -1.2 -5.8 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS04780 -1.2 -2.1 nitronate monooxygenase family protein compare
ABZR87_RS10190 -1.2 -3.9 translation elongation factor 4 compare
ABZR87_RS20875 -1.2 -4.1 LysR family transcriptional regulator compare
ABZR87_RS07665 -1.2 -5.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS15380 -1.2 -1.5 SDR family oxidoreductase compare
ABZR87_RS13285 -1.2 -5.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS05645 -1.1 -2.5 SDR family oxidoreductase compare
ABZR87_RS21955 -1.1 -4.5 hypothetical protein compare
ABZR87_RS00865 -1.1 -1.2 VTT domain-containing protein compare
ABZR87_RS23215 -1.1 -3.4 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS11010 -1.1 -1.1 oxidative damage protection protein compare
ABZR87_RS06710 -1.1 -8.2 glutathione synthase compare
ABZR87_RS11940 -1.1 -1.1 SsrA-binding protein SmpB compare
ABZR87_RS17310 -1.1 -4.0 PadR family transcriptional regulator compare
ABZR87_RS01565 -1.1 -5.4 NADP-dependent malic enzyme compare
ABZR87_RS12955 -1.1 -2.4 terminase endonuclease subunit compare
ABZR87_RS18190 -1.1 -1.4 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS12960 -1.1 -1.1 head completion/stabilization protein compare
ABZR87_RS13540 -1.1 -1.5 DUF1488 family protein compare
ABZR87_RS04605 -1.1 -2.2 DUF2795 domain-containing protein compare
ABZR87_RS22915 -1.1 -5.3 glucose-6-phosphate dehydrogenase compare
ABZR87_RS00795 -1.1 -1.4 site-specific tyrosine recombinase XerD compare
ABZR87_RS00295 -1.1 -2.3 ABC transporter ATP-binding protein compare
ABZR87_RS08660 -1.1 -1.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS16070 -1.0 -2.6 Smr/MutS family protein compare
ABZR87_RS17340 -1.0 -1.7 MarR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in rhizosphere experiments