Experiment set3IT014 for Rhodospirillum rubrum S1H

Compare to:

Succinic Acid 31.25 mM; anaerobic

200 most important genes:

  gene name fitness t score description  
Rru_A1735 -5.8 -0.8 hypothetical protein (NCBI) compare
Rru_A3626 -5.7 -1.5 Glucose inhibited division protein (NCBI) compare
Rru_A3800 -5.4 -1.2 hypothetical protein (NCBI) compare
Rru_A3149 -5.3 -0.7 Protein of unknown function DUF214 (NCBI) compare
Rru_A3341 -5.1 -2.1 Acetylglutamate kinase (NCBI) compare
Rru_A3190 -4.7 -2.3 Aspartate carbamoyltransferase (NCBI) compare
Rru_A3558 -4.6 -1.2 Protein of unknown function UPF0005 (NCBI) compare
Rru_A1767 -4.6 -1.3 peptidase M23B (NCBI) compare
Rru_A2887 -4.3 -1.5 GreA/GreB family elongation factor (NCBI) compare
Rru_A3704 -3.9 -7.4 Periplasmic solute binding protein (NCBI) compare
Rru_A2847 -3.7 -0.7 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A0752 -3.6 -1.2 hypothetical protein (NCBI) compare
Rru_A1239 -3.6 -0.9 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A0058 -3.4 -0.6 Dihydrokaempferol 4-reductase (NCBI) compare
Rru_A0596 -3.3 -3.7 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI) compare
Rru_A0668 -3.2 -2.3 Cobalamin-5-phosphate synthase CobS (NCBI) compare
Rru_A0514 -3.1 -8.6 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A0155 -3.1 -2.6 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A2886 -3.1 -19.6 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A2901 -3.1 -1.4 Histidine triad (HIT) protein (NCBI) compare
Rru_A2100 -3.1 -4.4 Protein of unknown function DUF81 (NCBI) compare
Rru_A3276 -3.0 -3.3 Ornithine carbamoyltransferase (NCBI) compare
Rru_A0394 -3.0 -3.0 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A0894 -2.9 -2.0 stress protein (NCBI) compare
Rru_A2772 -2.9 -1.8 ATP phosphoribosyltransferase (NCBI) compare
Rru_A3380 -2.8 -1.6 hypothetical protein (NCBI) compare
Rru_A2869 -2.8 -0.6 Exopolysaccharide synthesis, ExoD (NCBI) compare
Rru_A3502 -2.8 -0.5 hypothetical protein (NCBI) compare
Rru_A3195 -2.7 -2.6 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A2936 -2.7 -10.1 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A2525 -2.7 -8.1 Peptidase U32 (NCBI) compare
Rru_A3751 -2.7 -7.7 Argininosuccinate synthase (NCBI) compare
Rru_A1691 -2.7 -7.3 Spermine synthase (NCBI) compare
Rru_A0232 -2.7 -4.6 hypothetical protein (NCBI) compare
Rru_A0617 -2.7 -2.9 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A1620 -2.7 -0.6 hypothetical protein (NCBI) compare
Rru_A2981 -2.6 -3.3 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A3191 -2.6 -9.9 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A2507 -2.6 -10.4 Orotate phosphoribosyl transferase (NCBI) compare
Rru_A2421 -2.6 -6.6 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A2902 -2.6 -0.6 hypothetical protein (NCBI) compare
Rru_A1064 -2.5 -1.4 Plasmid maintenance system killer (NCBI) compare
Rru_A0296 -2.5 -1.1 hypothetical protein (NCBI) compare
Rru_A2771 -2.5 -3.7 Histidinol dehydrogenase (NCBI) compare
Rru_A1894 -2.5 -3.2 heavy metal translocating P-type ATPase (NCBI) compare
Rru_A1786 -2.5 -14.2 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A1804 -2.5 -4.1 N-acetyltransferase (NCBI) compare
Rru_A2404 -2.5 -8.9 Phosphoribulokinase (NCBI) compare
Rru_A2524 -2.5 -10.1 Peptidase U32 (NCBI) compare
Rru_A3642 -2.4 -0.5 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A2983 -2.3 -0.7 Polyprenyl synthetase (NCBI) compare
Rru_A0224 -2.3 -2.1 Protein of unknown function DUF160 (NCBI) compare
Rru_A1191 -2.3 -8.1 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A3384 -2.3 -3.6 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A3533 -2.3 -5.6 hypothetical protein (NCBI) compare
Rru_A0404 -2.3 -15.5 Amidophosphoribosyl transferase (NCBI) compare
Rru_A2400 -2.3 -10.0 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A1955 -2.2 -1.1 Phosphoribosyltransferase (NCBI) compare
Rru_A0469 -2.2 -9.1 Ketol-acid reductoisomerase (NCBI) compare
Rru_A1179 -2.2 -0.8 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2989 -2.2 -2.0 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A1105 -2.2 -3.7 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A0397 -2.1 -4.5 Argininosuccinate lyase (NCBI) compare
Rru_A3594 -2.1 -1.9 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A3424 -2.1 -2.5 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A3425 -2.1 -4.9 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A1890 -2.1 -1.6 hypothetical protein (NCBI) compare
Rru_A0574 -2.1 -1.1 Carboxylyase-related protein (NCBI) compare
Rru_A3167 -2.0 -3.5 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A0493 -2.0 -6.2 Phytoene desaturase (NCBI) compare
Rru_A0494 -2.0 -4.4 Squalene/phytoene synthase (NCBI) compare
Rru_A0663 -1.9 -0.8 Cold-shock DNA-binding domain protein (NCBI) compare
Rru_A1048 -1.9 -1.6 Protein of unknown function DUF465 (NCBI) compare
Rru_A3322 -1.9 -2.2 Transcriptional Regulator, Crp/Fnr family (NCBI) compare
Rru_A3165 -1.9 -3.8 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A2935 -1.9 -4.0 PAS/PAC Sensor Hybrid Histidine Kinase (NCBI) compare
Rru_A0671 -1.9 -3.5 cobalamin synthesis CobW protein (NCBI) compare
Rru_A3369 -1.9 -1.2 hypothetical protein (NCBI) compare
Rru_A3547 -1.9 -2.5 hypothetical protein (NCBI) compare
Rru_A1837 -1.9 -2.3 Porphobilinogen synthase (NCBI) compare
Rru_A1926 -1.8 -2.2 hypothetical protein (NCBI) compare
Rru_A2510 -1.8 -1.1 hypothetical protein (NCBI) compare
Rru_A3427 -1.8 -11.7 Tryptophan synthase, beta chain (NCBI) compare
Rru_A0624 -1.8 -6.3 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A2403 -1.8 -9.1 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A3528 -1.8 -1.6 hypothetical protein (NCBI) compare
Rru_A0334 -1.8 -2.4 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A0712 -1.8 -1.3 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A3150 -1.8 -2.5 ABC transporter component (NCBI) compare
Rru_A0654 -1.7 -2.9 Multiple antibiotic resistance (MarC)-related proteins (NCBI) compare
Rru_A2632 -1.7 -1.1 Peptidoglycan-binding domain 1 (NCBI) compare
Rru_A2974 -1.7 -5.9 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A1189 -1.7 -6.6 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A1086 -1.7 -1.8 hypothetical protein (RefSeq) compare
Rru_A2885 -1.7 -5.0 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A0922 -1.7 -0.9 Protein of unknown function DUF1044 (NCBI) compare
Rru_A2975 -1.7 -7.2 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A3328 -1.7 -3.4 OmpA/MotB (NCBI) compare
Rru_A3264 -1.7 -5.1 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A0627 -1.7 -4.7 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A3009 -1.7 -3.4 Aminotransferase class-III (NCBI) compare
Rru_A3397 -1.6 -1.3 hypothetical protein (NCBI) compare
Rru_A3359 -1.6 -4.8 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A1552 -1.6 -1.4 Peptidase S16, ATP-dependent protease La (NCBI) compare
Rru_A2870 -1.6 -3.6 integral membrane protein TerC (NCBI) compare
Rru_A2167 -1.6 -4.5 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A0599 -1.6 -0.7 Phosphate ABC transporter, permease protein PstC (NCBI) compare
Rru_A1441 -1.6 -1.3 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A1788 -1.6 -1.2 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A3173 -1.6 -3.2 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A0486 -1.6 -4.0 von Willebrand factor, type A (NCBI) compare
Rru_A3548 -1.6 -5.5 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A1897 -1.6 -3.2 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A0137 -1.6 -3.6 TRAP transporter solute receptor, TAXI family (NCBI) compare
Rru_A3393 -1.6 -2.0 Penicillin-binding protein 1A (NCBI) compare
Rru_A2393 -1.6 -1.6 hypothetical protein (NCBI) compare
Rru_A0159 -1.6 -1.3 Exodeoxyribonuclease VII (NCBI) compare
Rru_A2154 -1.6 -1.6 Biopolymer transport protein ExbD/TolR (NCBI) compare
Rru_A2000 -1.6 -3.0 hypothetical protein (NCBI) compare
Rru_A1439 -1.5 -1.0 Putative FecR (NCBI) compare
Rru_A2990 -1.5 -4.1 precorrin-2 C20-methyltransferase (NCBI) compare
Rru_A1928 -1.5 -6.8 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A1218 -1.5 -1.4 phage shock protein A, PspA (NCBI) compare
Rru_A0181 -1.5 -2.5 hypothetical protein (NCBI) compare
Rru_A1640 -1.5 -1.8 Multiple resistance and pH regulation protein F (NCBI) compare
Rru_A0576 -1.5 -2.2 chemotaxis sensory transducer (NCBI) compare
Rru_A3766 -1.5 -2.1 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A1827 -1.5 -5.3 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A1167 -1.5 -1.2 putative hydrogenase expression/formation protein HupK (NCBI) compare
Rru_A1454 -1.5 -0.9 Phage Tail Collar (NCBI) compare
Rru_A1127 -1.4 -1.6 ISBm1, transposase orfB (NCBI) compare
Rru_A3266 -1.4 -5.0 Homoserine O-acetyltransferase (NCBI) compare
Rru_A1545 -1.4 -2.6 Putative diguanylate cyclase (GGDEF domain) (NCBI) compare
Rru_A3277 -1.4 -1.6 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A0187 -1.4 -1.5 hypothetical protein (NCBI) compare
Rru_A2275 -1.4 -1.5 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A1777 -1.4 -1.6 Beta-N-acetylhexosaminidase (NCBI) compare
Rru_A3382 -1.4 -3.8 Cobalamin biosynthesis protein CbiB (NCBI) compare
Rru_A3693 -1.4 -1.5 Protein of unknown function UPF0011 (NCBI) compare
Rru_A2439 -1.4 -2.3 Mammalian cell entry related (NCBI) compare
Rru_A3162 -1.4 -5.5 Prephenate dehydratase (NCBI) compare
Rru_A2994 -1.4 -1.5 hypothetical protein (NCBI) compare
Rru_A2099 -1.4 -4.5 surface antigen (NCBI) compare
Rru_A0776 -1.4 -1.7 Aspartate/tyrosine/aromatic aminotransferase (NCBI) compare
Rru_A1998 -1.4 -3.8 ribulose-bisphosphate carboxylase-like protein; rubisco-like protein (NCBI) compare
Rru_A3377 -1.4 -0.9 Alpha/beta hydrolase fold (NCBI) compare
Rru_A0621 -1.4 -7.1 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A1617 -1.3 -1.3 Protein of unknown function DUF1289 (NCBI) compare
Rru_B0050 -1.3 -1.5 dTDP-glucose 4,6-dehydratase (NCBI) compare
Rru_A2085 -1.3 -1.4 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) compare
Rru_A2986 -1.3 -3.2 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A1669 -1.3 -1.6 Transcriptional Regulator, MerR family (NCBI) compare
Rru_A3623 -1.3 -0.7 hypothetical protein (NCBI) compare
Rru_A2144 -1.3 -1.2 hypothetical protein (RefSeq) compare
Rru_A2308 -1.3 -1.9 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A3633 -1.3 -1.3 Thiamine monophosphate synthase (NCBI) compare
Rru_A0537 -1.3 -1.6 Protein of unknown function DUF955 (NCBI) compare
Rru_A3227 -1.3 -3.7 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A3367 -1.3 -1.4 Cob(I)alamin adenosyltransferase (NCBI) compare
Rru_A0618 -1.3 -4.7 PUCC protein (NCBI) compare
Rru_A3552 -1.3 -1.5 hypothetical protein (NCBI) compare
Rru_A0670 -1.2 -0.9 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A3270 -1.2 -2.2 Hydroxyacylglutathione hydrolase (NCBI) compare
Rru_A3214 -1.2 -4.5 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A0087 -1.2 -3.5 HI0933-like protein (NCBI) compare
Rru_A2925 -1.2 -1.3 Major facilitator superfamily MFS_1 (NCBI) compare
Rru_A2512 -1.2 -3.6 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI) compare
Rru_A0753 -1.2 -4.1 Chaperone clpB (NCBI) compare
Rru_A0683 -1.2 -0.3 3-deoxy-7-phosphoheptulonate synthase (NCBI) compare
Rru_A0206 -1.2 -1.4 Cobalt chelatase, pCobS small subunit (NCBI) compare
Rru_A1896 -1.2 -4.2 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A1208 -1.2 -3.7 AFG1-like ATPase (NCBI) compare
Rru_A2207 -1.2 -2.3 hypothetical protein (NCBI) compare
Rru_A0225 -1.2 -1.0 Metal dependent phosphohydrolase, HD region (NCBI) compare
Rru_A0372 -1.2 -2.0 hypothetical protein (NCBI) compare
Rru_A2837 -1.2 -1.0 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A1572 -1.2 -1.5 Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI) compare
Rru_A3731 -1.2 -3.7 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A3044 -1.2 -1.4 hypothetical protein (NCBI) compare
Rru_B0025 -1.2 -1.6 hypothetical protein (NCBI) compare
Rru_A0370 -1.2 -1.0 Protein of unknown function DUF58 (NCBI) compare
Rru_A2992 -1.1 -1.2 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A3428 -1.1 -5.4 Tryptophan synthase (NCBI) compare
Rru_A3748 -1.1 -1.6 hypothetical protein (NCBI) compare
Rru_A0620 -1.1 -3.9 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A3725 -1.1 -2.1 ABC transporter component (NCBI) compare
Rru_A1417 -1.1 -2.4 thioredoxin-disulfide reductase (NCBI) compare
Rru_A2153 -1.1 -1.6 TonB-like (NCBI) compare
Rru_A2042 -1.1 -2.7 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) compare
Rru_A2183 -1.1 -3.4 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2098 -1.1 -1.9 Protein of unknown function DUF490 (NCBI) compare
Rru_A0091 -1.1 -1.0 PilT protein-like (NCBI) compare
Rru_A0741 -1.1 -3.1 Signal Transduction Histidine Kinase (NCBI) compare
Rru_A1517 -1.1 -1.0 transposase of ISBst12-like element (NCBI) compare
Rru_A0485 -1.1 -2.8 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A1731 -1.1 -1.0 hypothetical protein (NCBI) compare
Rru_A2651 -1.1 -1.8 Aminotransferase, class I and II (NCBI) compare
Rru_A2391 -1.1 -1.7 hypothetical protein (NCBI) compare
Rru_A0622 -1.1 -4.4 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A0770 -1.1 -1.9 Peptidase M23B (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in carbon source experiments

For carbon source Succinic Acid across organisms